Array 1 3174-16 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDDY01000016.1 Propionibacterium freudenreichii strain T82 scaffold00016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 3173 36 100.0 37 .................................... GGCCCACATCCATCCGAGACAGAAAAAGCCCCGGCGA 3100 36 100.0 38 .................................... AGGTGAAGAGATGAAATGAAGAAATTCAGCTCCCCGAT 3026 36 100.0 36 .................................... TATCGACTTATGCCGTACACGCGCGAGCAACGCCCC 2954 36 100.0 36 .................................... CTCAATAGCTTCTTGCTTTCCTCTGTTGGAGATAAC 2882 36 100.0 35 .................................... AAGACAGACGGATGGGTTCCCGAGTGGTTCGTCGA 2811 36 100.0 37 .................................... TGAGACGTTGTCGCCGACAGTCCCCCGTCTCGGCAGA 2738 36 100.0 36 .................................... AGCCACTGCAATTGGTGGAGTGTTCTTCTTATTGAA 2666 36 100.0 37 .................................... TGTTGGATGCCTGGCTGGTGGGGATCGTGCGCCACAG 2593 36 100.0 36 .................................... TGACAATTGATAATGCCAATTAATTGGCTTTACTAG 2521 36 100.0 37 .................................... ACCAGCATATAGACCAGCATACGTACCAGCATATCGT 2448 36 100.0 37 .................................... CACCACACAGCTCGGAGAAGCAGACCGGTGGGGCCGT 2375 36 100.0 37 .................................... ACCCAGCCATCCCACGGGCCCTCACCCTGAGCGCGTG 2302 36 100.0 34 .................................... AAGATCAAGATTCCTGACATTACTGGTCCGGATT 2232 36 100.0 37 .................................... CATCTAGCAATTGGTAAAAATCCAGTTCGCTCATCTG 2159 36 100.0 35 .................................... GCAATCGAGAACGCCCCCACCAGCGCCGAGATCGC 2088 36 100.0 40 .................................... CGTGGGAGCAGGTCATGGGTCGGGTGATCGCATGATGCCG 2012 36 100.0 38 .................................... TTTCTCGCTAACCTTCCGGGCGATGTCGATTGGCTCGC 1938 36 100.0 34 .................................... TTGTCGGCTTCCACGGTGGAGACGGACTGCACAG 1868 36 100.0 38 .................................... TTGATATCTTGAATCTCAAGCTCAGACCCAATATCAAG 1794 36 100.0 38 .................................... TTTAATCACATGGGGCGGATATAATCCGACCTATGACC 1720 36 100.0 38 .................................... TCACGCTCGCGCCCGGTACGGGCGACGGGATTCTCACC 1646 36 100.0 35 .................................... ACGTTAAAGTTCTAGGAGAAACACAATGAGTAACG 1575 36 100.0 35 .................................... ACTCCTACCGGCTTCCTCGCCGGCATCCTCGAAGT 1504 36 100.0 34 .................................... AGTCAGGATGCGTGGGTTCGCTCACACATGGACG 1434 36 100.0 34 .................................... GACACCCCGTATGCCGTAGCTCAGCACGAGAACG 1364 36 100.0 37 .................................... AGCGGCGATCTGAGCGGCGTCCCAAGCAGCGCCATAA 1291 36 100.0 39 .................................... GCATCCGAAGCGGTGACCATTCCGGCGATCGTGCGGGGA 1216 36 100.0 38 .................................... GCAAAACGACCAAAAGAGACAAGCCCTGAGTAAGCAAA 1142 36 100.0 37 .................................... CGCGAGGTTCCCGTGGAAACCAGGAGTAAGCGTTCGA 1069 36 100.0 38 .................................... TGCGCCAAGTTCTTGGCGAGGATCTGCTCCTTGCCGTT 995 36 100.0 37 .................................... GCGACCGGGGAAGAGAATTCGAGCGTACTCCAGCATG 922 36 100.0 34 .................................... CTGTGGGGTGTGTGCATGGCGTCGAGTGAGGTCG 852 36 100.0 41 .................................... CGCGAGGTTCCCGTGGTCTCGGGTGAAGTTGTGGTGCGACC 775 36 100.0 37 .................................... TCGCTGGCTCGTGATCGCGGTGTCACCACAGGCGCCT 702 36 100.0 38 .................................... ACGTCCAAGCATTTCAAGTTCTGCGCCAATGCGCGCAT 628 36 100.0 35 .................................... AAGCTGGGTGGCAAGATCACCCGCACTGTCCAGGT 557 36 100.0 35 .................................... GCATAGAGGCTGTAGATGCCATCGTCGGGGACGGT 486 36 100.0 39 .................................... CCATCCTGGAAGAACTCGATGTCGTCATCCTTGTCGGAC 411 36 100.0 35 .................................... AGCCGGTCCACGCCGTCGGCGGCCATGCCGGTGGT 340 36 100.0 36 .................................... CACTTCATGCGCGGGGGCGACCCCCAGGCGCAGGCC 268 36 100.0 39 .................................... ATCAACCCCAATCGCGGCCAGTGGTATTCGCTGGCTCGT 193 36 100.0 34 .................................... ATGGCGTCGAGTGAGGTCGAGCGGTTGCGGGCTG 123 36 100.0 36 .................................... ATCGGTGGCGTTCAAGACCCGATCCCTGACATTCGC 51 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 44 36 100.0 37 ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Left flank : ATATAGGAATGACGGTCAGATGAGCCGACGAGATTCCCATTGCTTTCTGATCGCCTACGACGTGCCCGATGACCGTCGTCGCACCAGGTTGGCCACGGTACTGAAGGGCTACGGGGAGCGTGTGCAGTACAGCGTATTCATGGTTGATTGTCCGCCGTCACACCTGCTGGTGCTACGCCACGATCTCACCGACGCGATGGATATTGATGAGGACTCGGTGGTGATCTGCGACCTGGGCATGTCCACGTCGGCGGACGCCCAACGCATCACCTGGTTGGGCGGTCAGAGGTACCAGAGCGGCGGACGCAGCATCATCATCTGACGACCAGCGGCTCTGCGGCCCGGTTGTCACGCGGAGCCGCTCGCGTGATGTTTCCCCTTGTCACAAGCAGATTGCGCTGAAGGGGTCATCAATCCTCCACGCGCGAGCCATCCTTCTTCAGCACCGCTCGCAGGCGGCCGGTATAATGCCTAGTGGGAGCCCTGTTCCCACGCCCGCC # Right flank : CTCCATTGACTTAACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 3-322 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDDY01000044.1 Propionibacterium freudenreichii strain T82 scaffold00044, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 3 30 100.0 44 .............................. TGATGCCCCAGGCCGGCGCGCAACTGCTCACCGAGCTGATTGCC 77 30 100.0 44 .............................. GTGAGCTCGGGCTGAGCGTGAGCCAGACAGCGGCAAAGATTGCT 151 30 100.0 41 .............................. AACCTGTGGGGCTTCCCGGTTGTCGTCACGACCGCATTGCC 222 30 96.7 41 .............................A GCGAAAGAGCGATCATTCCGGGTATGGATCAAACCATTGCC 293 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================ ================== 5 30 99.3 43 CCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Left flank : CCC # Right flank : CTTGCGCCAGCTCTCGGAGACGATGGCGCCTTGACGTGGCGTTGCCCCTCTCCCCGGGCGAAGCCCTCCACCCGTTCAACGTCCCGAAACTCACGGAACTCCCGCCGGCGCCGAGAGCTAGACTCGCCATGAGAAGGTGGGAGGTAGGGCAGACGCCCAGCTGACCCACCTTCCCTTTTTCGCACCCCCGGTGGCGCCAAGAGCCACCGATTCCGTCCAACCGCCCACCCTCTCGTCCACCCGCGCGAGGACCCGTCACCCCGATCAGCGCTCACTGACAAGGCCACGTGGCCGCGCACGAGCCCTAGGCGTTTCCGGACCTGACAGCCGCCATGACAAGGCGTTTTCGTCACGCACTGGCGATGCCGAGACGTGCCCCCACACAGCTCCCCCCGCTACGGTTAAATCCGGCGGGGCCGGCAAGGCATGCCCCCTTCATTGAGGCTGACGCCAATAGATGGGCATTTGCGACACCCGCCAAAGTCCCTCCTCACGGAGGG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 3046-2510 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDDY01000052.1 Propionibacterium freudenreichii strain T82 scaffold00052, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 3045 36 100.0 36 .................................... CATGAGATTGGGACACTTTCCTCCAGCGTTGTTCTG 2973 36 100.0 34 .................................... CGCGATGTCGCTCACATTGACATTGGCACATGGA 2903 36 100.0 35 .................................... TATCCGCGCCGACACCGGAAGACGTAGCTGTGGTT 2832 36 100.0 36 .................................... ATTGGGGAGGCAGCACCACCACCGCCCCACACGGCA 2760 36 100.0 36 .................................... GTCATCATCGGCTGGCCGTTGCTGAACGTTCTCGGT 2688 36 97.2 35 ....A............................... TGCGACACCGATTCGCTGCACCTGATCACCGACGA 2617 36 97.2 36 ...............................A.... AGCCCGATCAGATCGCAGAGGACCGCACCCTACGCA 2545 36 97.2 0 .....................A.............. | ========== ====== ====== ====== ==================================== ==================================== ================== 8 36 99.0 36 ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Left flank : ACTTAACCAGACCAGCCGCCAATTCCTGAA # Right flank : TCGTTGAACATTCTAGAATTGGCAATCCCGACATGACATTGCGGCTCTTCACAGATGACGGTGTAGTTCGGTTCTGAATCCTCCGGTGTCCAGTAGGGCGCGGATGACGTAGTGGGCAAGGTTGCGGAAGCCCAGCGCGGTGCCGCGGAGGTGCTCGAGTCGGCCGTTGATCGCCTCGGTCGGGCCGTTGCTGGTGCCGGGGTGGTCGAAATAGGCCAGCACATCGAGGGCTCGGCGTTTCAGTGTCCGGCCGAGGGTGATGAGTTCTTTGAGCTGCTTGGGCACCCCGTCGGTGAGGTCGTCGATCACTGCCTGCAGTTCTCGCTTCCCGGCAGCGCGGTCGGGATGGCGGTAGGCGGCGACGATCCGCTGGTAGACGTTCCAGGTCGCCTCGACCTCGACGTGCTCATCACTGGCGAACACGGCCTTCAGGCGGGTGATCTGCTTGTCGGTGGGCAGGTCAGCGCCGGTGTGCAGCACGCGGCGGATCCCGTAGAGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //