Array 1 10-278 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLU01000236.1 Porphyromonas gingivalis strain WW2881 NODE_236_length_282_cov_6_ID_66001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================================== ================================= ================== 10 43 100.0 32 ........................................... GATGGTCAGACAGAACTATCCTCACAGCAACT 85 43 100.0 33 ........................................... GGCGTGGCAATGTTTTCGGCTTCTTGCCGCACT 161 43 100.0 32 ........................................... GATGGTCAGACAGAACTATCCTCACAGCAACT 236 43 100.0 0 ........................................... | ========== ====== ====== ====== =========================================== ================================= ================== 4 43 100.0 33 GGGAATAGCTTTCAGATTTAGTATTTTTGTTGCAACGCACAGC # Left flank : CATGGCACTG # Right flank : CGAA # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGAATAGCTTTCAGATTTAGTATTTTTGTTGCAACGCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.47%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [6.7-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 3-351 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLU01000201.1 Porphyromonas gingivalis strain WW2881 NODE_201_length_733_cov_78.632_ID_65931, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 3 46 100.0 29 .............................................. GATGGTCAGACAGAACTATCCTCACAGCA 78 46 100.0 30 .............................................. CGAACTTTTTATCGCTTGTGCTGTCTACGA 154 46 100.0 30 .............................................. CGCCGAGATTGGAATTAAAACTAAAACATT 230 46 100.0 30 .............................................. CAGTCATAAACAAACCTTCAAAGCCATTAT 306 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 5 46 100.0 30 ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGCAACGCACAGC # Left flank : GCA # Right flank : GCGGTTTAGAGAATATATAACCCAGGGCAACCGCATCAAATCTTTAGTAGCTTTTTGAGATAGTCCATATTCAGAGCGGCTTTGAACAACCTCTTGCGTAAGGAAAGTTTGTCTTTATGCCCGGATACAATGGCTAAAGCAAACTTTCTCAACGTGTTTAGATTGGTGGCTGAATAATCCTTACGAGCTCGACAAGTATCCTCCCTAAAGGTTACATCCAAATGCCAATGGAGTCGATTCTCAATTCCCCAATGCCCTCGAATATATTGTCCGATTAACTGACAATCTTCGGGTGGTAAACTGCTGATATAATACTGCCTATCTATGCGAGTCTCTCCCTCTGAATTACTGATCTCACGCTCCACTTGAATTAAACTTCTCA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGCAACGCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 144-2317 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLU01000026.1 Porphyromonas gingivalis strain WW2881 NODE_26_length_28829_cov_16.9531_ID_65581, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 144 46 100.0 30 .............................................. CGTATTCTTTCTCTAATGGATCGTGGGTTG 220 46 100.0 30 .............................................. CGAGATGCGCAAGGCTCTCTTTCCGCTCTT 296 46 100.0 30 .............................................. CCATATCCTGATGAGTCTTTCTATGCAGTT 372 46 100.0 30 .............................................. GCGCCAGCGGCCATGGACGCGGACGAAGTA 448 46 100.0 30 .............................................. CAAGTAAAGGGGAAGAACACCCTAACTCTG 524 46 100.0 30 .............................................. CGGCCTTAGGAGGAAAGAGATTATGGGATA 600 46 100.0 30 .............................................. AATGTATTTCAGCATGTTGGGAAAGACAGT 676 46 100.0 30 .............................................. TTCTAGCTATCTAGATGAGATGTGGAGTGC 752 46 100.0 30 .............................................. ACCTAAGGAGTTTGATTTAGAATCCACTAC 828 46 100.0 30 .............................................. ATTGATGAAGAATTAAAAGAAGTTATAATT 904 46 100.0 30 .............................................. GCTATCCCTCTTCGCCAGATTGTTGAGGGG 980 46 100.0 30 .............................................. GCCCGACATGAAAAAGTGGATACTTTTTCA 1056 46 100.0 30 .............................................. ACTTCTGCAATAGCTTCGAGTTCGCTATTC 1132 46 100.0 30 .............................................. TTTGACGTGTCTATTGACAACGCAGCTGTA 1208 46 100.0 30 .............................................. CTATGAATCAACCACTTACACCGTTTTCTT 1284 46 100.0 30 .............................................. CTGTCGGAGGTAAACAACATCGTATTGATA 1360 46 100.0 30 .............................................. ATCGGTACTGGCAGAGACGAACGTGAGCCA 1436 46 100.0 31 .............................................. AGGCACAGCACAGCCGATTCCAAGCCCACCG 1513 46 100.0 30 .............................................. AATGCCGGCAAAGGTTCCGCACCTACATAG 1589 46 100.0 30 .............................................. TGGCACAAGAAGAACGGAATCCGAGCTGCC 1665 46 100.0 29 .............................................. AAATATACCCGAAGAACGGTCGCGTATTT 1740 46 100.0 30 .............................................. TTTGACAGAGTGGATAAGACATGCTTGACT 1816 46 100.0 30 .............................................. TCACGGTTAGAGAGTTTGAGCGCAGGATCG 1892 46 100.0 30 .............................................. CGCTACCTCGTGTAGTATCAGCTCTCGGCT 1968 46 100.0 30 .............................................. GTCCGCGCCTATATCCCGTGCGCGCGGTAA 2044 46 100.0 30 .............................................. GTAAAGCCCCTTTGCCCACGCGGTAGAGGG 2120 46 100.0 30 .............................................. GCATAGCATATAGTGATTCGGCTTTCGAGA 2196 46 100.0 30 .............................................. ACATATCACAGCGAATCGAACTTGGCCATA 2272 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 29 46 100.0 30 ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGCAACGCACAGC # Left flank : GCTATAACTAGAATATCGCTTAACTTATGCTTGCAACGACCCACTACACGTGGATCTTCTACTTTAGAAAAATAATCTTGTACATCCATAACCCGAAGATAGCTCTATTTTGATGCGGTTGCCCTGTATATAACCGAGAAGCCA # Right flank : CAGAATCCCCGTAATCACCTGTAATACAGGACATAGAGGGTGATTGTGAGTAAGAAAAAAACAACTGTGCGTAGCTGAAAAGCCGAGATTTCTCTCGGCTTTTTAATTTCTATGCCCCAGACGAAAAGCACTAATTCCACAAAAGATGATAGAATATATTTAAAAAAGTTCAAGCTGGAGGGGTGGCTGATAATACTCTCTTCCTTTCCCACAAATGATCTCCATGGCTGAAAATTGTTTGTCTGTGATTGTCATCAAACCTATTTTGCCCTTTTCAGGAATAGCAGAACGGACCCGTCGGCAATGTGTTTCTGCATTCTCTCTACTTGCACAGTGTCTGATATAGATAGAAAATTGGAACATCTCGAAACCATCTTTAATCAGATTTTTCCGAAAGATTGCTGCACGTTTCCTGTCGGCTGCAGTTTCCGTAGGTAGATCGAAGAATACCATTACCCACATACTTCTATAGGCTGAATATCTGGATCTGTAATGACTCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGCAACGCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 44773-46128 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLU01000004.1 Porphyromonas gingivalis strain WW2881 NODE_4_length_57606_cov_42.269_ID_65537, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 44773 36 100.0 31 .................................... CAGAAGCCATTTCCGCCTGTCCCGCCGGAGC 44840 36 100.0 30 .................................... CCATCGGCACCGCTTTATTAAGCAGGCCGA 44906 36 100.0 30 .................................... CCATCCCGACATCGTGGAATCGTTCCTCAT 44972 36 100.0 30 .................................... ACGAAGCAAAGAAGTTTGAGGTTGTCATGA 45038 36 100.0 30 .................................... GTACAACCGGTAACTCCAATAGTCTGCTGA 45104 36 100.0 30 .................................... AGAGACGGCAAGCTTCACCAACTTGCCGAC 45170 36 100.0 30 .................................... AAGCTAAAGTATTTGGTGATACACTGCACG 45236 36 100.0 29 .................................... CCGCGGGGGCGTCTCCCTTTGCGCCGGAA 45301 36 100.0 30 .................................... CTTCAAGCATTAGACCTGAAGACCTTGGAA 45367 36 100.0 30 .................................... CCTCGGTAGCGCGGACAGCGTGCCGCCTGC 45433 36 100.0 30 .................................... GTTCTTGTGGCCTGCATTGTCAAAGAAGGT 45499 36 100.0 30 .................................... GATCTTGAATCTTAATATTCGTCAAAAAAC 45565 36 100.0 30 .................................... CGTTTACGTTGGCGGCCTTGTTTATGCCGT 45631 36 100.0 30 .................................... ACACATAGCCTCCGCCACTGTGCTACCCGA 45697 36 100.0 30 .................................... AGTCGGAACGGTCTGCAAACCGATGGTACT 45763 36 100.0 30 .................................... TCTATGGTGCAAGTGTCAAACACGCTTTGG 45829 36 100.0 30 .................................... CAATGCCGGTGCGCTCATTTCTCGTCCTCC 45895 36 97.2 30 ...........T........................ ACAAGTATCAAAATGGCCCTTTAGCCTATA 45961 36 100.0 30 .................................... GCTGTTATGCACCCCGTTTGTCACCAGCCC 46027 36 100.0 30 .................................... TGTATTTTCAGCCTTATGGCGGTCTCGCTG 46093 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 99.9 30 GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC # Left flank : GCGAAAACCTATTATTTCAGGCCGGCCTGCATCCGTGGATTCCTGTCCGAACTGACGGACGAATTTTATAAGAATGGGAACGGTATTTTCTTGTCTAAAGAGATTATTTCCCGTATCTTTGAGTATAGAAGTATCGTTTACGGTCTTTTGCTTTCGGAGAGGCAGAACTCGGATGAGAGGGTTGTGATGAACAAGCCCGAAACGGCCGAACGGATGATCAGCATTCATCAGGAGCTTACCCAAACCGTTAGAGAAGCCATCGCACTGAAGGAGCGAACGTTGAACTTTTGAGTGCGAACCGCCAGGAGCACAGGAATGATTTTTTGAGAGAAAATAGCATAAACCCGACCGTAGAGAGTCATTTTTTCAATCCTAATATCCCACTAAAATGATGATGACAGACTGTTTTTCGCCGGCTTGCAGTGGCTCCAAAGCCTTACCGTCACTCACTTTCTGTGGAATGATGACTTCTCAATCGGTTTCAAATTCGATGGGGGGTA # Right flank : CATGATTCCTGATTGGTGGCTTGGGCGTTGGAATGTGCAGTAGTGTGGGGATTCTTCCTCGTTGGGCTTTTTCGCTACATTTGCAGGCGGACGAGCTGCTCCCCTCTTCGGTGAATTTGTACCGGGGAGTGCTTTCCCTTTCTATGGAATGACTTTGTAAACGACTAAATGAATGATAGATATGTGCTCCGATTCCTCTCTTTCTTGCATTCTTATTCGGCCGGTTTCGTTCGCCTGTGTGGTTATATGCCGGCGCGTATGGCTGATACAAGCCTGCTGTATGAGCGGTAGAGCTTGAGAGCCGTTTCGTACCCCTTCGAAATAGATGAGGCACCCACCGAGTTCCTGCACGAACTCGGTGGGTGCCTCTTTATTTATACCTCCCCTAAAGGCCTTTCGAGGTGTCCGATTTATATCAAATCGGGCTTACAATCTATATATTTATCGCAATCGATTTATATATAAATTAAAAATGATTTATATACAAAATGAAAACGATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 8963-6795 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLU01000081.1 Porphyromonas gingivalis strain WW2881 NODE_81_length_9909_cov_31.3503_ID_65691, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 8962 46 100.0 30 .............................................. ATAATGGCTTTGAAGGTTTGTTTATGACTG 8886 46 100.0 30 .............................................. AATGTTTTAGTTTTAATTCCAATCTCGGCG 8810 46 100.0 30 .............................................. TCGTAGACAGCACAAGCGATAAAAAGTTCG 8734 46 100.0 29 .............................................. TGCTGTGAGGATAGTTCTGTCTGACCATC 8659 46 100.0 30 .............................................. GCCATGTACTCTATGGAGATGAGCGGCGCG 8583 46 100.0 30 .............................................. TTCTCGCTCGCTACCGAGAACGCCTCTTCG 8507 46 100.0 30 .............................................. TAAATACATGCCCCGACGAATCGAAATAAC 8431 46 100.0 30 .............................................. ACTATCGGTCGGAGCTTAGAGCCGCGGCCG 8355 46 100.0 30 .............................................. CTGGGGGGTACATCGATTTACTGAAAGAGT 8279 46 100.0 30 .............................................. AGAAACCTCTTTAGCGAACAACGATCGCTG 8203 46 100.0 29 .............................................. TAATCATTTGCGTTTGTATTACATGGTTC 8128 46 100.0 30 .............................................. GATATCGAAATAGAAGCCTACAACGCCAGT 8052 46 100.0 30 .............................................. ATTGTACCATTGCGGCGACGGAGGTCTGAT 7976 46 100.0 30 .............................................. AATAATAAACCTTGTAGTTACGACCGACAA 7900 46 100.0 30 .............................................. TATATCGAGAGAGGTATAAGGTTCTTCCTC 7824 46 100.0 30 .............................................. GCGAAGGTGGGAAACCGCCCGAAATTCTGC 7748 46 100.0 30 .............................................. AGTATGTATCAGCCGTACACGAAGGACAAT 7672 46 100.0 30 .............................................. TGCAAAGAATGCACGAAACATTCAAGCAAG 7596 46 100.0 30 .............................................. TGACCTCCTCAAGGGAAATAGAAACAACGT 7520 46 100.0 30 .............................................. GAACCCCAAAAAGAAGAAGAACTATGTTAG 7444 46 100.0 30 .............................................. TACGATAGAAATAATACGTGCAATCATAAT 7368 46 100.0 30 .............................................. TATCTTTTCTGTAGTAGTCTGTTATTTGAT 7292 46 100.0 29 .............................................. GCAAGGAGCGCAGCTCCATCGTGTCATAC 7217 46 100.0 28 .............................................. GCGGATAAGGATGCGGGGGTTATTTTTG 7143 46 100.0 29 .............................................. ACAGCGTGAAGTTGCCGGAGAGGTTGATT 7068 46 100.0 30 .............................................. CTTGAGGCGCAAGCCGGATTGAAGATTGCT 6992 46 100.0 30 .............................................. ACAGCGTGAAGTCGCCGGAGAGGCTGATTG 6916 46 97.8 30 ...........................................C.. GGTGATGTTATTGAATTAGATGGAATAAAA 6840 46 91.3 0 .................C.T...............T......A... | ========== ====== ====== ====== ============================================== ============================== ================== 29 46 99.6 30 GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Left flank : AAGTGTCATTGTTATGAGACTTTGGAGAAAGATCATGGTCGTATTGAGAAGCGGACTTATACCGCATTACCGGCTTCAGAGGTCTTTGACGAGGGGGAATATAGTCAATGGCAGGGCTTGAGAAGTTTAATTCAAGTGGAGCGTGAGATCAGTAATTCAGAGGGAGAGACTCGCATAGATAGGCAGTATTATATCAGCAGTTTACCACCCGAAGATTGTCAGTTAATCGGACAATATATTCGAGGGCATTGGGGAATTGAGAATCGACTCCATTGGCATTTGGATGTAACCTTTAGGGAGGATACTTGTCGAGCTCGTAAGGATTATTCAGCCACCAATCTAAACACGTTGAGAAAGTTTGCTTTAGCCATTGTATCCGGGCATAAAGACAAACTTTCCTTACGCAAGAGGTTGTTCAAAGCCGCTCTGAATATGGACTATCTCAAAAAGCTACTAAAGATTTGATGCGGTTGCCCTGGGTTATATATTCTCTAAACCGC # Right flank : AGGCCAGCTGGGGTGTGACGGGGTATAACGTCTATGACTACGAAAAAGACGGGAAAACTTACAGAGTCGGGTTCGAGGTAATAGAGAAAGAGGCTGCGAGGTGGAAGCAGCCGTATTATGTAAAAAAGAAAAACTGATCAGGGTCAGTTACGTGCTAAAAAAATCGCCCGAATTCGCGTCCCTAATCAGCTTTCTGTACTGCAAATATAAACAAAGTTTCTGAAGCTGTGTTGCAACAACATTACTAAATCTGAAAGCTATTCCCTGTGAAAAAAGGGAGACCACGAAAATAATAATCTGCTCAAAAATCATGCGCCAAAAAAGTTTTCAACAACGAAGACGAGTTTGGAACGATTCCAAATAAGTATCTGTAGAGAGGAGAAAAGCAAGGGAAAAGTGCAGGGAAAAGGAACTGCCATAGATCGAAATTCCACTTAAAACAAGTCGGACAACAATCTGTATATAAAGCGTTTTCAATTTGTATACAAATCGTTTTCATT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //