Array 1 62-1373 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPWZ01000116.1 Pseudoalteromonas luteoviolacea strain NCIMB 2035 contig0116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 62 29 100.0 32 ............................. CGTATACAAAAGCACAAGACGAGATTAAACAA 123 29 100.0 32 ............................. CAATTATGCTTGATATTGATTCCCCGGGAGGT 184 29 100.0 32 ............................. CTATATGATCGCGCTTTAAATGGGTCACCAAT 245 29 100.0 32 ............................. TAGTAAGCAGCGTTCAATAGTTAAAATTGTTA 306 29 100.0 32 ............................. AACGATGCAACCAACATCAATATCGACGAAAC 367 29 100.0 33 ............................. TACAACAGGCTATACGTTGGACTATACCGTTGT 429 29 100.0 32 ............................. TAAATACTTAGCGGCTGCATTGGCATTTTTGA 490 29 100.0 32 ............................. CCTGACTTTTTAGCCAGTTTGATAAGCGCATC 551 29 100.0 32 ............................. TCTTCCAATACCCAGCATAAATTAGCTTCACC 612 29 100.0 32 ............................. TCGACATAATATTTGTGTGAGTAATGGCAAAC 673 29 100.0 32 ............................. TATTTAGTTATAGCTCTGGTAAATACCCAAAC 734 29 100.0 32 ............................. CATATTGGCGAGCTTCATACTCTATATTGTCA 795 29 100.0 32 ............................. CCTCAATACATTGTGTTGTTAGATAACGAGGT 856 29 100.0 32 ............................. ATAGGCATTACCAGACCATAGATAGTCATAGG 917 29 100.0 32 ............................. TTGTCGATGTGCACATTCCTTGAATTGTCGCT 978 29 100.0 32 ............................. CCATCGACAACTCAGTCGAAATGAATGGTGAG 1039 29 100.0 32 ............................. CTCAAATAAAACGTTTGTATATGTACGGGTAT 1100 29 100.0 33 ............................. AACTTTGATACTTTTTTAGCCATTGCGTTGTTC 1162 29 96.6 32 .................C........... TATTCGTTTCAGTGGACAGTTCTACTGGCTGT 1223 29 100.0 32 ............................. GTTAGAGTTTATGATTAAAGAATACAAGCTAT 1284 29 100.0 32 ............................. GATGGTGCATTTGTTTGATATCCCACATGTAG 1345 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.8 32 GTGTTCCCCGTATGCACGGGGCTAAACCG # Left flank : TGGTTCGCTGCACGCTTACGGCTAAACCGAATTAATAATAGTGGCTTTCTGCTCACCCTGTG # Right flank : GCCAGTTCGCAAATACCAGTGACGCAAACAAAGCGATAAACGCCTTCCATATCAGCGGGGGGATTGTGTGATGTTCACAAGGGGTTTTCCAGATTCGTTAGCGAGTGTTGAAGCTACCTTTACCAAACGTGCTGTTCTTCGTGGATCTCCTAACTCACTTTTTGCAAATTGTTGCTCTGCCCACTTGGTATGTTGGTCAATCATTATCTTCTCCAGTGTATGGTTTGAAGGTCTGATCACACTAAGGAAGTTTAGTTCAAAAAAATCCCCGCTAATTTCTTAGCGAGGATTTGTGTATAAGAGACAGGGAAAGAGCAGCGTTCTTGCTAGTTGGCAAACATATACAAAAATAATGCAATTGATGGCATTTCGATAACTTGTCTTTGATCAATGACAGCCTTAATGAGTTTTGATACATTTATTTCATTTTTAATTTACTGATAGTTGTTTATGCAGGCTAAGGAAGAGCAATATTTTAGATACATTGAGGCCGTGTTATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12150-12606 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPWZ01000116.1 Pseudoalteromonas luteoviolacea strain NCIMB 2035 contig0116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12150 29 100.0 32 ............................. CAACAACAAACCCAACAACAATTCACAAAGGC 12211 29 100.0 32 ............................. CTTGTTAAAAGCCTATCCGCTAATTTGATCCT 12272 29 100.0 32 ............................. CTTAGAGATTACCAGCAAGAGCTGTCAGATAA 12333 29 100.0 32 ............................. CTATGGTGTTATCATCTACTTTGCCTTCAACG 12394 29 100.0 32 ............................. TTATGAATAGCAGCATAGGGCTTATTGCTGCC 12455 29 100.0 32 ............................. TCGGTAATAAAATCGCTCATCATGTCGAGCCA 12516 29 100.0 33 ............................. TCGAGCTTCAACAACCCTAACGCCCATACCTGA 12578 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 100.0 32 GTGTTCCCCGTATGCACGGGGCTAAACCG # Left flank : CCATATGAAGATGCGCAACCTCCAGCAATTCCTGAACCCGAATCAATTGGCGATGATGGTCACCGCAGTGGTGGTCCATTATGAGTATGTGTGTTGTTGTAACGGAGGCGGTACCGCCAAGGCTGAGAGGTAGGCTCGCTGTATGGCTGCTGGAAATCAGAGCGGGTGTATATGTGGGGGATATTAGTCGCCGCATTAGAGAAATGGTGTGGTTTCAAGTTAGTGAGTTAGCTGAAAACGGTAATGTAGTAATGGCATGGGCAACCAATACTGAATCGGGCTTTGATTTTGTAACTTATGGTAAAAATGCTCGAATGCCAGTTGATTTTGATGGGCTGAGGTTGGTGAAATATACACCGCAAGAAAGCTCTTCTATTGATAATGAATAATTGTTTTGCTCTTTAAAAATATGGCTATTTAAACCTCGTATTGTACCCAAAATTTTTGGTGGATTTTTATGCGTTAAATTTACTTATATAAATCAATGGTATAAATTTAGA # Right flank : CATGTAACCATTGTGGTGCTGAGAGTACAGGCGTGTTCCCCGTATGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 53-1119 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPWZ01000142.1 Pseudoalteromonas luteoviolacea strain NCIMB 2035 contig0142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 53 29 100.0 32 ............................. AGTTTGCACGTACTGAAAGCTCAATGATTGCG 114 29 100.0 32 ............................. CTCACAAGGCATCATTAAACAAATTAAGTATT 175 29 100.0 32 ............................. GAGCCGGTGGTGTTGATGCCCGTATTATAGAT 236 29 100.0 32 ............................. CATTTCGTCATAGCTGCTTTTACTTCGTCAGT 297 29 100.0 32 ............................. AACGCACTTACTTTTGAAAATACGCCATCGAA 358 29 100.0 32 ............................. CCAGAGCTTTTCTCGCTTCCTATTGAGCTTGC 419 29 100.0 32 ............................. TCATTTCAAGCGTCCTTAGGGGTATCTGTTAA 480 29 100.0 32 ............................. GAAACAGCAATGCGCACGAAAACAACTCAAAT 541 29 100.0 32 ............................. GCTTCAGAGTAAACTAGCAAAAGATGACGTTG 602 29 100.0 33 ............................. AGATGACCCAGACTACTACAAAAAAGTTCTGGC 664 29 100.0 32 ............................. AAGAAATGCAACTTTTAGGCGTTGATGTTCCA 725 29 100.0 32 ............................. GTGACGAGGTTGTATTAAAGCGACACGAATTA 786 29 100.0 32 ............................. CATCTGGGGGGGATATTTGACCTAAAACTATC 847 29 100.0 32 ............................. ATAACTGGCCTGTTACGTTGAAATTCTCCAAA 908 29 100.0 32 ............................. ATGAATGTCTACGTATGCCTGGTCCAGTGAAA 969 29 100.0 32 ............................. GCGCATGGCAAAAAATATCACTGTCAAAAGGC 1030 29 100.0 32 ............................. TTCGTTAGACGCTAACGCTACATTAAACATTT 1091 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 100.0 32 GTGTTCCCCGTATGCACGGGGCTAAACCG # Left flank : GTATGCACGGGGCTAAACCTCATATAACCGCTATGCTCTTCTGAATAACGATG # Right flank : GGCAATACTAAAAGACTCATACCCTACTTTTAGTGTTCCCCGTATGCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1789-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPWZ01000211.1 Pseudoalteromonas luteoviolacea strain NCIMB 2035 contig0214, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1788 29 100.0 32 ............................. TGATATAGATGTCTGCCAAACTGGACAGGAAC 1727 29 100.0 32 ............................. AGATTGTGGGAAATTAATGCTCAAGGAGCTAA 1666 29 100.0 32 ............................. ATTGTAGGAGGAAATGGCAGTGGAAATGATCC 1605 29 100.0 32 ............................. GGCGCGCTCTGGCTTGACTGTATTTACGGTCT 1544 29 100.0 32 ............................. GTAGCCTTCGTATTCATTTTAAATTGCCTGGC 1483 29 100.0 32 ............................. TACTTCATGTACATCTGCGGAGCTTGTCTCTT 1422 29 100.0 32 ............................. CCAATTCTTCCTTGGAATTTAATTATTTCACA 1361 29 100.0 32 ............................. GGCATGGACAGCAAAATAACCAAACGCAGAGA 1300 29 100.0 32 ............................. TTACCGTTACTTTATGGGTGATCGTAAATTCA 1239 29 100.0 32 ............................. TTACCGCTGAATCAATGCTACTCTCTCCACCT 1178 29 100.0 33 ............................. TAATTTTTTGTCAATGTTGATATTTGTTCCCAA 1116 29 100.0 32 ............................. TAAGTGGACTGTACGAACACTCCCAGCTGTTT 1055 29 100.0 32 ............................. TGATAACTGTCTCATGTAATTCTTTCACTGCT 994 29 100.0 32 ............................. GAGTTTCGCCGTTGCCGTCACCATTTCCACCA 933 29 100.0 32 ............................. TTTCTACCAATGTGATTAGCAATTGCAGAAGC 872 29 100.0 32 ............................. AAGACGACAGAGCTTCTATATCTTTGGTGATT 811 29 100.0 32 ............................. AGTTCAAAGAATGGTTAGCAAGCGGTGACGCT 750 29 100.0 32 ............................. CCCTCGGGCCACTCTTCTCGGCCCTGTATTCG 689 29 100.0 32 ............................. TGTCCATCTGCTAATAGATGGGCAAGTTTGCC 628 29 100.0 32 ............................. CGTACATGCGTCATCGTAAATATAACTGGGAC 567 29 100.0 32 ............................. GCCCTACGCTGTGACTATCGCACGACGAGCCA 506 29 100.0 32 ............................. ATATTCGTAACGAGGTATCACGAATTCGTGAT 445 29 100.0 32 ............................. TTCAATTGAGAGAGATCAAATAAATGGCTACA 384 29 100.0 32 ............................. TATTGCCGCTGCTACCATTGACAAGTGCTCTT 323 29 100.0 32 ............................. TCAGCATTGGTTATGCTGACCGTGCCGAACTT 262 29 100.0 32 ............................. TCACCTTCAATTCGAAACATTACCTTAACAAA 201 29 100.0 32 ............................. GTGAAACCAATGTGTCATCTTGGCAACCTGAG 140 29 100.0 32 ............................. TGGTACAGGTAGCGTAACATCAATAACACTCA 79 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 100.0 32 GTGTTCCCCGTATGCACGGGGCTAAACCG # Left flank : TGCACGGGGCTAAACCGGGATTGCAGGTGGTTCCGGTGATGAATTGCC # Right flank : GCAATTGCCAACTATGCGATAGAAATTACAAAGGTGTTCCCCGTATGCACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 2367-18 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPWZ01000231.1 Pseudoalteromonas luteoviolacea strain NCIMB 2035 contig0236, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2366 29 100.0 32 ............................. TTCTTATGTATGCGCCAATTCCAGAACAAGAT 2305 29 100.0 32 ............................. CCCTATGCGATAATCGGCAACGTTTCCAGACA 2244 29 100.0 32 ............................. TGGGCGGGTAATGCAGGCCATTTACCAACAGG 2183 29 100.0 32 ............................. GGGTCGTAAACCCATCGTTAGTTGCGCAGCGT 2122 29 100.0 33 ............................. TACAGAGAGTTGTTTTCCATTGTGTCTATTTGC 2060 29 100.0 32 ............................. TATAGGTGCAATTCAATTAATAGAAACATCGT 1999 29 100.0 32 ............................. CAAATGCTTACCCGCTGCACACACAACACATA 1938 29 100.0 32 ............................. TAATAGATTTTTTCCTCTGGCTGCTGTAACAG 1877 29 100.0 32 ............................. ACTTTGTGCATATGATGCACATGTAATAAACT 1816 29 100.0 32 ............................. TCTAAACGTTTGAGTGTGATTTATGTCACCAT 1755 29 100.0 32 ............................. GCGAACGCCTGCTGTTGTGCGTCTCGTGCTAG 1694 29 100.0 32 ............................. AACATAAAGACAACAAAATAGATACTGCCATT 1633 29 100.0 32 ............................. TTTAGTGTGCAGTTAAAAGTGTCAATGAACGT 1572 29 100.0 32 ............................. TGATTAGACATGAGCTAAATTCCCGTATTCCA 1511 29 100.0 32 ............................. TTACCCGCCATGATTTGTTCTGCTGTGATCAT 1450 29 100.0 32 ............................. AAAACACACAAGCTGAGGCGGTTCATGTGGAA 1389 29 100.0 32 ............................. CTCTACAAATACGCTAATCTTAGTTGGTGACA 1328 29 100.0 32 ............................. TTATTATTACTACCTGTCGACCAGTCCCCTCC 1267 29 100.0 32 ............................. TTCTACTCTGATGACTTTACAGGCGATGACAT 1206 29 100.0 32 ............................. TGAACCCTCTGAGCGGAATACTCAACAAGAAT 1145 29 100.0 32 ............................. TTTATCACCTCAGAACGTTGCGCTAGCAATGA 1084 29 100.0 32 ............................. GCTGTGGCGGTATTGCTTCAATTCGCCGTCGC 1023 29 100.0 32 ............................. GAATAATAGCCTTGTGATGCTCTAAGGTGTGT 962 29 100.0 32 ............................. GTGCATTGCCGCATACTGTAGTTGCCGGAACT 901 29 100.0 32 ............................. GTCTAACACCATGCGAAAAGCTAGCTAAAGCT 840 29 100.0 32 ............................. ATCCAGTATTATCACCTGTCGTATCTATCCAT 779 29 100.0 32 ............................. CGAGCAAGCGCGCTTCTTGTTCAGCGCTAGGG 718 29 100.0 32 ............................. AGTGTGAATTTCTATCTCTGTGCTGAATGCAA 657 29 100.0 33 ............................. TTAAAAAGCTGGTTCAATTTAATTTGAATTTAC 595 29 100.0 32 ............................. TCGAGACTGCTATGAAAAAACATGGGATAGAT 534 29 100.0 32 ............................. GTGCATCATTCCACATGTCACCGTACAGATAG 473 29 100.0 32 ............................. GGTGGTAATTCATTGCGATGCTGCGGCTCTGT 412 29 100.0 32 ............................. GGTTAACGATACCTTCCACCTCTGGACGTGTG 351 29 100.0 32 ............................. GATTTTGATTGCTTCATGGGAAACTCCATGGT 290 29 100.0 32 ............................. CAGTTGAACAAGCGCAAACTCCACCTGACGTT 229 29 100.0 32 ............................. TCGGCGCAAGTGGTTCAGGCACTTGGCAGAGG 168 29 100.0 32 ............................. CTGTAGCTGATTTTCATAATGAGCATGGGGTT 107 29 100.0 32 ............................. TGGAGTCGATATAGTTAACCTGTCTCTGTATT 46 29 93.1 0 ...........................GT | ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.8 32 GTGTTCCCCGTATGCACGGGGCTAAACCG # Left flank : | # Right flank : TAAGCGTCGCCTAAACCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [13.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 325-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPWZ01000007.1 Pseudoalteromonas luteoviolacea strain NCIMB 2035 contig0007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 324 29 100.0 33 ............................. TACAGATATTACAGGTGAATTAGCTCCTTACTC 262 29 100.0 32 ............................. TTCACACATATATAATAAATACCTTTAAAAAC 201 29 100.0 32 ............................. CTATTACCAGTTTGAGCCAATTCATTTCGGAA 140 29 100.0 33 ............................. AACCACATATGACATCATTTTTATCAATAGAGC 78 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 5 29 100.0 33 GTGTTCCCCGTATGCACGGGGCTAAACCG # Left flank : ATGTGACCTTTTTAAATCAATATTCCACTCGTATTCTTCCCGGCTCCGATTTTGTGGCAACCGACACCAAACGCTTTAAACATTATGCTCGTGAAGTCAAACTCACCAGTTATATCAACCAATTCTTAAACGACAACGCATTTCGTAATATTGCTCTTGGACAAAACTACTTCAACCTGATGGATTTGGAGTACGAAGCACCTCAGATTTGTGACGAGTGATGGGGGAGCCTGCTTCATGAAACATAGCAGGATAAAAAATAAAGCGTAAGAGTAATTTATCACTGTATATTATTTACACAAAAAGATAAGGTTGCAAGGGCGTAGAGCATATGTATTTATTCAGGTTAAAACTGACTTTGCACTTTAAAAATTTGGGAAATATAGGATGTAGTTCATTGTAAACTTGAAGTGGTTTTTGACCTAATCTTTGTACCTATAATTTTTGGTAGATTTTTATGTTCTAAATTTACTTTTAGAAATCAATGGTATAAATTTAGA # Right flank : GTCATCGCAACCTCAACAGTGCCTTCTTTGAGTGTGTTCCCCGTATGCAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1750-10 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPWZ01000219.1 Pseudoalteromonas luteoviolacea strain NCIMB 2035 contig0222, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1749 29 100.0 32 ............................. CTTTTGGTGCACATAGCCGTAACTTGGTTCAA 1688 29 100.0 32 ............................. TCTTGAGTTAATGACCGCCCTTGAGCCTGTCG 1627 29 100.0 32 ............................. CAGAGCGCAACAAACGATTCTCAACGTCTAAT 1566 29 100.0 32 ............................. GATTTACATCCATTTTTAGAACACGCCAATTT 1505 29 100.0 32 ............................. GGCTGATCCAAAATGACGCTTGAAGGGAAAAA 1444 29 100.0 32 ............................. AAAAGAGCTTACAGACCTTCAAAGAACTTACG 1383 29 96.6 32 ....................A........ TCGACTGCAGCAGGTGCTGAGACTGCTGGTGC 1322 29 96.6 32 ............................T CAAAACCTCATTAACTCGATGACCAGTAATCT 1261 29 100.0 32 ............................. CTCGCGCTGAACGGTGTTTACGGTAACAGTAA 1200 29 100.0 32 ............................. TGAGTGTATGAATTGGCACATCTCCAACTGTC 1139 29 100.0 32 ............................. AGTAGCTTTAACTTGGCTATTTGCGCGCATTT 1078 29 100.0 32 ............................. GAAATTGTCACCGGTACTAGTGCGATCAATGT 1017 29 100.0 33 ............................. TATGGCTATGGGTGAAATGGGAGAGCTTATTGC 955 29 100.0 32 ............................. ACAGATAACCTAGTATGCCCTTACATTGTTAG 894 29 100.0 32 ............................. CTAAAACCGAACCTTCTTCGTCACCGTATGAG 833 29 100.0 32 ............................. TACAAGAAAGTACACCTCAGCTAAAAGCCATT 772 29 100.0 33 ............................. CGTATTCAATTCAAGAGCACATAGATTGCTCAA 710 29 100.0 32 ............................. GTGCTAGCCGGTTGTTTGAGAAGGGGTATTCA 649 29 100.0 32 ............................. TAAAACAGTAGGCGGGAAAGTAGCGGCTATAA 588 29 100.0 32 ............................. CCTGTTGAATTAATCAACGAGATTAAATGTGT 527 29 100.0 32 ............................. CTTTGTAACTGAACAGCTTGGCAGTAGTCACA 466 29 100.0 32 ............................. TGACATAGCCAATCTTCTTGGAGTCGATTATA 405 29 100.0 32 ............................. TACATTACAAAGCTCTTTAGCATTTTTCGTGA 344 29 100.0 33 ............................. GGAAAATTGGGTTTTGATATTTTCAATAGTCGC 282 29 96.6 32 ............C................ TATAAGCAGATCACTCCTGTTGAAGTAATGAG 221 29 100.0 32 ............................. AAATCCGCCCTTATGCTTTGTGGTTTGTAACT 160 29 100.0 32 ............................. ACTTCAACGTTTAAATCACCCGCTGCAACGCT 99 29 100.0 32 ............................. AAAACTATTCGTTTAATACCTCCTTTTTTGCT 38 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.6 32 GTGTTCCCCGTATGCACGGGGCTAAACCG # Left flank : TGCACGGGGCTAAACCGTGCATGAATTGGTTTGGGGAGCTGAATCTGA # Right flank : GATCAAGGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //