Array 1 62626-63447 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYGJ01000001.1 Streptococcus cristatus strain CC5A TW70_contig000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================= ================== 62626 25 92.0 49 ....A.....A.............. TTCCTGTTCTACCGTCAATCCAGCCGCTTTCGCTTTGGTTAGCCCCCCC 62700 25 96.0 48 ....A.................... AATCATCTTTGTAATGCTAAAGTGAAATTCCTTATCGGTTAGAACCCA 62773 25 100.0 47 ......................... CCAGCCTCGTCAGTTTGACCGATGGCCATGTAATTGGTTAGAACCCC 62845 25 96.0 47 ..........A.............. TCATTAAGCCTGTTAATCTTGATGATTGCTGCCATCGTTAGAACCCC 62917 25 96.0 46 ..........A.............. GAAACGTATAGTCTCGCACAGATACCATTTCAAACGTTAGACCCCC 62988 25 96.0 46 ................T........ GGAGCACGGCGGACATTGATAGCATCCACAGTCAGGTTAGACCCCC 63059 25 96.0 48 ....A.................... AATCATCTTTGTAATGCTAAAGTGAAATTCCTTATCGGTTAGAACCCA 63132 25 100.0 49 ......................... AAATTGACGACGACCATTGATGATGACAGGGCGCTTTGTTAGAACCCCC 63206 25 100.0 46 ......................... TCAACTGCTCTAGAGTGAGTATCATTGTAGTAAGAGTTAGAACCCT 63277 25 88.0 48 .C........A.....A........ GGATTTGCTGATTTTGCTTGTCGATAGTCTGCATGCTGTTAGATCCCC T [63280] 63351 25 92.0 47 .A..C.................... TCATTTTGGTAATCGGTCATTGGTTTACCGATTTTGTTAGCCCCCTC 63423 25 76.0 0 ....A.....A........A..GTA | ========== ====== ====== ====== ========================= ================================================= ================== 12 25 94.0 47 CTAATCCTCGCGAGGGGACGGAAAC # Left flank : GCTATCAAAGCTTTTAGAAGGCTATGGTGTGAGGGTTCAGCGTTCCTGCTTTGAGCTGGCTCTTGATAAGCTGGACTTTGACTGCCTTGTGAGGGAGCTGAGGGCCTTTTATCAGGCAGAAGAAGGGGACAATATCATTATCTATCTGGGGCACAAGGAAGAGGAGGCTGGGACAAAAGTCCTAGCCTCTCAATTGTCTTTGGATTGTCGAGCAAGACGCAGTGGTTGAGTGGGCTCTACTACGCTGATTTCATCAGCTTTTACAGCCCTACTCAACTGTGCGGAGGTGGGACGACGAAATCGAATTCTAACGAATTACCGATTTCTGTCCCACTCTCTATGATGGCGCGGAGTTGATAGACGATATTTTGTTCTTTTAAGCTTTGATTTCTGGGCTAGGCATGGTATAATGAGGTTAGGGTTTAACTAGTTTTTAGGGGACACAAGATGTAGTGGTGGGGCTTCTGCGCATCTGTACAAGATATGGCGTTAGACCCCCC # Right flank : AGATGGGGGCTTTTTTACTTTCCCTCAGCTTCTTGCTTTGCCAAGAAAGAAGGATCTTGACTGCTTAAGCTTTTTTAAACGCTTCAAAAAAATTGACAACGCTTTCAAAACTTGATATAATAAGCTGAGTAAATAATAATCGTTCTAAAGGGCGCCATGAAATCGGTGAAAGATTCTTTTGCCTTTTTCGGGCGCTTTTGCAGTATAGAGAGGAGACCGTGTGAAGAAAGTAGAGTTACATTTATCAAAAACAAGACTAAAAGACGAAGAATTGATCAGTAAACTTCAGGGCTTTTTGATGGCGCAGATTTCGCCAGACTTTGCGACCTTTCTACATGAGCAGGAGACCAATCCCTACTCGCTGAATCTGAGCTCCAGGCACGATGAGTCGGTGTGGGTTGTCAATTTGCTTTCAGAAGAGGCGGAACAGCAAATGCTAGCTCCCTTATTAAACTTGGAAACCATCAAGCTAGAGAGCTATGCTGAGGAAATCCTTGTCA # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAATCCTCGCGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 169225-170049 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYGJ01000001.1 Streptococcus cristatus strain CC5A TW70_contig000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 169225 29 100.0 43 ............................. TAGTAAAACACCACCTTTTTAATAATACTTGTCTAATAAGACA 169297 29 100.0 47 ............................. AAATTACTATAGCCATTATAATCACCTTCTTTCTATGTTTTGGCTAT 169373 29 100.0 39 ............................. GAAAAGTACTGGCATATTAGCCACCTTCTTTCTTAATTT 169441 29 100.0 42 ............................. AGATTCCAAGGCGCAATATGGTAGATAGGTAAACCTTCTACC 169512 29 100.0 41 ............................. GTAAAATTGGTATAAAAGTCGCAGTAAAAGACCCTCATACC 169582 29 100.0 44 ............................. TTAAATTCGTGCGTTCTCTCCTCATGATAGGTATGCAAGTTACT 169655 29 100.0 46 ............................. AATATTGAATATATCGGTTTATTAGTTTGTACAATTAATACTCTAA 169730 29 96.6 47 .....G....................... ATTTTTTCAATTTTATACCGATAATCATCTTCTAGGTAAGCTACAAG 169806 29 100.0 39 ............................. GAAATTCCAGTTGGTTTTTCACCATTTAAAATTTCGAAA 169874 29 100.0 45 ............................. TCATATATTGACCTCATTTCTAAAAGAACTATTTATAAAAAATAT 169948 29 96.6 44 .........................G... TTGAGTACGTTCATCAAAAATCCGCCAGAATTTTTCAAAATTTC 170021 29 86.2 0 .........................TTTG | ========== ====== ====== ====== ============================= =============================================== ================== 12 29 98.3 43 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : CATGCTTCAAATAATCGTCCTTATAGTTTGCATCTGGATTTTGCAGATTATATGAAGCCGGTTATCGTGGATCGAGTGATTTTGAGTTTGATCAATAAACATCAAATCAATGCCACAGATCATTTTGAAGAAAGGGAAGATGGCTCGGTTTATCTGAATCGTGAAGGGAAGTATATCGTCTTGAGAAGTTTTGAGGAAAAGCTACAGACGAGGCTAGTCATGGGAGGCTCGACCTATACCTATGCCCAGCTCATCCAGCACGACATCCGGCAGTTTAAGAGAATCTTGCAGCAGGATGGGAACTTAAAACGCTTTAAACCCTACAAATACTATTAAAAAGTCGGTCGATCTTTTCGATTTTTTGCCTCCTTTTTAAAAGCTGTCAACCAAGCGGTTTATAAGCGTTAGGACAAAAAAGATCGACCGACTTTTTTCATTGAAATCTTGAAAAAAGCCCTATTTTTTGATACAATCAATCTAGAAACAGCGAGAATGCTGTT # Right flank : GTGTGTCTTTGTCTGTCTCTAAGGCACCAAAAAAGCGAGCATATTCTTTTCGGCTGGGAAGCCTGAGAATTTGTTCGCCTTTTGTTTTGTAGGAATATTTGAAATTTCCGTCATAATTTGCTATACTAGTAGCAGTTAGAGATTGTGGCGGAGCTGTTGGCCGCTGCATGGATAATCAAGAAAAGTACTCTTCAGTGCTTTTTTATTGTTATAAAAATGGAGGGATTATGCTTTACATTTGGTCTTATTTGAAACGCTACCCCAAGTGGTTGGTACTGGATTTTGTGTCGGCCATCTTTTTTGTAGTGGTCAATCTAGGGCTGCCAACGGTTTTGGCGCGCATGATTGACGAGGGGATTAATCAAGGCAATCAGGAACGCCTGTATTTCTGGGGCTTTATCATGCTGCTGGTTATTATCCTTGGAATCTTGGGGCGGATTGTCCTTTCCTATGCCGCTGGAAAATTAACGACCAGCATGGTGAGGGATATGAGGAATGAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //