Array 1 92952-92251 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRVZ01000009.1 Escherichia coli strain KCJK8103 NODE_9_length_153945_cov_13.916258, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 92951 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 92890 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 92829 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 92768 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 92707 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 92646 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 92585 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 92524 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 92463 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 92401 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 92340 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 92279 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 110083-108468 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRVZ01000009.1 Escherichia coli strain KCJK8103 NODE_9_length_153945_cov_13.916258, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 110082 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 110021 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 109960 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 109899 29 96.6 32 ........T.................... ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 109838 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 109777 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 109716 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 109655 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 109594 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 109533 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 109472 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 109411 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 109350 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 109289 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 109228 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 109167 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 109106 29 96.6 32 ...........A................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 109045 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 108984 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 108923 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 108862 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 108801 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 108740 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 108679 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 108618 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 108557 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 108496 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //