Array 1 58035-56724 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIVLU010000018.1 Pseudomonas stutzeri strain DP6Y115-2 DP6Y115-2_ctg00018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 58034 29 100.0 32 ............................. AAACCGGCGAGGATTGGAACCTGCAGCTGGCT 57973 29 100.0 32 ............................. AATCAGCCATTGCACGACTGACGACCGACGGT 57912 29 100.0 32 ............................. CACCACGGCGACGGGCCGCTGTTCCCGGCGCG 57851 29 100.0 32 ............................. ATCGGCATCATGCAGTTCTTCATGCCGGAGAC 57790 29 100.0 33 ............................. GCGACCTATTCTGTCAGTCCAACGCCTGCGGCC 57728 29 100.0 32 ............................. GCCAATGTGCAATGGCGCATCGATCGCGCCGC 57667 29 100.0 32 ............................. CCAGTCGATCCGGTTTTCCGCACAACAAACTG 57606 29 100.0 32 ............................. GGCGTGGTGACGCTGCAACAGATGATCGAGCT 57545 29 100.0 32 ............................. GACTGGTCGAAAGCCGGCCTCGAGCGCGAGGT 57484 29 100.0 32 ............................. CGAACGATCGGAGGCTCGGCCAAGCCCTCGAT 57423 29 100.0 32 ............................. ACACTAAATGTGTTCAGCCGCCACCCTGTCAA 57362 29 100.0 32 ............................. GAAATGATCGAGGACGTCGCCAGCGGCAATGG 57301 29 100.0 32 ............................. CGAAACCTGCACCTCAGCGGTGAGGCTGTCCG 57240 29 100.0 32 ............................. TACCTTGCAATGCCGTGAAAAGATGGACAGAG 57179 29 100.0 32 ............................. CGTGCGGCACTGGTGTTCCCCAAGCATCGCGA 57118 29 100.0 32 ............................. TACACTTACCCATTGGCCTTGCTCCGATGGAG 57057 29 100.0 32 ............................. CCTGCGATGTCCAGGGCGAGCATCCAGCGGCC 56996 29 100.0 32 ............................. GCGGACTGAACTTGCGCCAACGCTGCATCGTC 56935 29 100.0 32 ............................. CCGACACGGCGGCGCTCTTGAACTCGGAGAAA 56874 29 100.0 32 ............................. TTGTCTTCGTTGAGGTTGCGGAAGTACCTGGC 56813 29 100.0 32 ............................. TTGATCATCCAGGGCAATCCGAGCGCCATTGT 56752 29 89.7 0 ...C............A......A..... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.5 32 GTGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : GAAGAACACGAACAGGCGCTCGACCACCGGCAACGGCCAATCCAACGCCTGAGCCAAGGGACGCAAGGAAAACTGTGGCAACGCCAGCAGTTCCTTCCCGCAGGCCGCCACATCCAGGCTGTGAAACGCCAACAGATGATAGCGGGCCGCGTTATCCGGCTCCGGGGATGCCTTGCCCCAGTAGGAGAAATATCCAAGTGTGGCCGGTTCACTCATGTCGCACTCCCTGCAAGGCAACCGTGGAGCAAGCAAGGCGAACAAAGTGCCACTACAGAGGGTGCCAGGACGCCATGACCAAAGCCCTCACCACTCTTAGCCCAGAGCCTGCGGGCCTGAGCGCTCAGGTCAGAGAATCCTTTCATCTATGCTTCGCCAGTGACTAGCGAGAGCAAATTGCCACTGTCATTCGAACCAAATCAAGCTCCGCTCTTTAACAATGAAAATCTGGTAGTTTTTCGGCGTTCGATTTTTCCTTGATGGAACAGTAAGTTATGGCAAGG # Right flank : GCCGAATGCTCGGGTCGACGACTCGGGGGGCTCCTGCACGGTCTCGCCCGTAGTCCCGGACAGAGTGTCCATACGTGAGGTCGGGCACGCCAAAGCGGTGGAAGCGGATATGGGCCGGACCATCGCGGATTCCTGACTGACATAGGGTCTGTTCCCGTTTCATCGCGAGCTGCAAACGAAGCAGGAACAGACCTCAGGCTATCGGTCGGGTTGCCAGGCAAATTTGAGCCGCGCCCAGTCAGGCCAGGTGCGGCGCGCTACGCGCCAGCAGCGCGTCGATGTCGAGCCGGCGCGGCAAGGTTCCATAAGCCCGCCCGTGCGTTTCGAGGCGGCTGGCGATGAAGGCATCCGAAACGGCCGCGTTGCCGGCTTCGAGCAGCAGCTTGGCCTGCAGGCCGACGGCAACGTCTTCGGTGAGCTGGCGGGCGCGGTACTGGATGTCCTCGGTGTCGCCGAAGGCGGCCTTCAGCCGCTGGATATGTGCCTTCAGGCGCGCATCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 68812-71161 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIVLU010000018.1 Pseudomonas stutzeri strain DP6Y115-2 DP6Y115-2_ctg00018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 68812 29 100.0 32 ............................. TCCAGCTTGTGGTTGATCTTCACCTGGTTGCT 68873 29 100.0 32 ............................. GCCCAGCTCAATGCCCGTGGAGGCGCCACCAC 68934 29 100.0 33 ............................. GCCCTACTGCCGGACTACAGCGCAATCGAGAAC 68996 29 100.0 32 ............................. CACCTGGACAATCTGCGCAGAATTGAGCTTGA 69057 29 100.0 32 ............................. CGCTCGCCGGATCCGGCGCCCGAACGCCGCGA 69118 29 100.0 32 ............................. CCTGCCGGTGCCGTCCCATGGCTTGGCCAGAA 69179 29 100.0 32 ............................. TCGATTGCGAACTGGCGCTATGACGTTCAGCA 69240 29 100.0 32 ............................. ATCGTTATTCGGTGCGGCGCGTCCAGCCTGGA 69301 29 100.0 32 ............................. CGTTCCAGGTCGGCGCGATACTGAGCGCGGCC 69362 29 100.0 32 ............................. GCTGGCGTCGTCCGTCGTCTTCAGGTCCACGA 69423 29 100.0 32 ............................. CGCGACAGCAGCAGTTCTTCCAGCGGGTCGAT 69484 29 100.0 32 ............................. TCATTCAAACAGATGATTAAGGACGGCGAGGT 69545 29 100.0 32 ............................. CCATGGGACGGCACCAGCCGGCTTCCAGACCT 69606 29 100.0 32 ............................. CAAGCGCGCCAGCTGAACGGCGAGCCGTACCC 69667 29 100.0 32 ............................. ATGACCCGCCGTACACCGGTGGCCTTGGCGAA 69728 29 100.0 32 ............................. TATTTGTCAGCAGCGTCTCTTGGTGCATTGGG 69789 29 100.0 32 ............................. GCAATGTATTGCGAGTAGTAAGCGGCCGGCAC 69850 29 100.0 32 ............................. TCGCGGATCGGCTGCAGGTACTCGGGTGTACC 69911 29 100.0 32 ............................. GGCGAGTTCCGCGTCAAACCACAAAACGGGGT 69972 29 100.0 32 ............................. CAGCGCCGAGGAAGCCGCCTGCGCGGTCAAGC 70033 29 100.0 32 ............................. CCGATGAGCGGAGCCCTGATGCTGCATATCTA 70094 29 100.0 32 ............................. CCAAGTTGGGGGAGCGCCGGGTATGAACGCCG 70155 29 100.0 32 ............................. AAGGGAAAGCTCTGGTACTCGTCGCGGATCTG 70216 29 100.0 32 ............................. GTCATGTTCGCCAATGATGCGGGCAGCGGTGA 70277 29 100.0 32 ............................. CTCCGCAGCGAGCCGCCACGCGAGCGCATTGG 70338 29 100.0 32 ............................. GAAGAGAAAATGCTCATGCTCGGCCCGGTGCT 70399 29 100.0 32 ............................. GACAGCTGCTCGCCGGTCCGCATTCCGGTGTA 70460 29 100.0 32 ............................. CTCGGCGTTTGCCGTGCGCAGTCGTTTCGAGG 70521 29 100.0 32 ............................. CGAATGCGTAGTTGGCCCAGGTTCGGAATGTT 70582 29 100.0 32 ............................. GCCCAACACCCAAAGAGAACGAGGACCAGAAA 70643 29 100.0 32 ............................. CTGCCTTAGATGAGGATATAGCCGCTTTGGAT 70704 29 100.0 32 ............................. CCGAGCAGATCTCGGGCTGCCGTCTGATTACA 70765 29 96.6 33 ............................A GGGAACCGGGCCGGTACAGGGGCTGTGTGGAAT 70827 29 100.0 32 ............................. CGATGCGGTGCCGTCATCGATGACGCGCTCCT 70888 29 100.0 32 ............................. GCCGACCAGGTAGTGACGGGCCGTCCGATCGC 70949 29 100.0 32 ............................. GTCGCTCCCAGCGCCACCCTCACCGACTGGCT 71010 29 100.0 32 ............................. GCAACCGACCAGCGCCTGCTCGCGACCATGGC 71071 29 100.0 33 ............................. AGTATACGTTCCTGCCGTACAGCCTGTCGGAAC 71133 29 89.7 0 .............CC......C....... | ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.6 32 GTGTTCCCCGCGCATGCGGGGATGAACCG # Left flank : GCGAAGATCATCCCCACCATTGAAGACGTGCTGTCGGCTGGCGGCATCTCGCCGCCCGAAGCGCCACCCGAGTCCGTACCGCCTGCCATCCCCAACCCTGAAAGCATCGGCGAGGCCGGGCACAGGACGCAGGGATGAGCTTTCTCGTCGTGGTTACCGAAAACGTACCGCCGCGCCTGCGTGGACGTATGGCCATCTGGCTTTTGGAGGTACGCGCCGGTGTCTATATCGGCGATGTTTCCAAACGCACCCGCGAAATGATCTGGGAGCAACTGAGCCAGGGACATGAGGACGGCAACGTGGTGATGGCCTGGGCCAGCAACCATGAGTCCGGCTACGAATTCCAGACCCTCGGCCCCAATCGTCGTCTCCCCGTGGAGTTCGACGGCCTGCATCTGGTCGCCTTCCATCCGCTGGAAAATCCCGATCTTTAACAAGGAAAAGTTGGTAGATTTTTAGCAGCTGATTTTTCCTTTCTGGAACAGTCAGTTACGCTAAGT # Right flank : GAACGGCACCGCAATAGCTTTCCTGCGCCCCGCACCCAGCGGGGATAGTGAACACCACGCCGAACCGAGAATCCCCCGAGCCTATCCGCCAAGAATGCCGGCGAGCAGCCGGCGGTCGATATTGGCGCCGCTGAGCACCACGGCGATGCGTTCACCGCGGTTGCGTTCCTGCTCCTGCATCGCCGCAGCCAATGCGGCGGCGCCGGCGCCTTCGGCGGTGTTGTGGGTGTCTTCGTGCAGGGCGACGATCGCCTGGCGAATCTCCGCATCATCGACCCGCACGATGCGGGTTGCACCCTGGTTGATGATCTCCAGTGCTTCGGCGGCCGGCATTCGACAGGCCATGCCGTCGGCAAAGGTGTCAGCGGTTTCGGTGCAGACGATACGGCCCTGTTCGAAGCTCTGTGCATAGGCATCCGCCGCGCTGGAGACGACGCCGATGATCTCGGTATCCAGGCCCAGCAGATCGCGTGTGCGGATCAGGCCGCAGATGCCGGAAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //