Array 1 3764-3191 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVXP01000122.1 Clostridium luticellarii strain DSM 29923 CLLU_contig000122, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3763 30 100.0 36 .............................. TAAATTCCCAACATGATTTAAACAAGAAGATATCGG 3697 30 100.0 39 .............................. TTCTGTTGTCGTTCTCAGTGTCGAACCAAAGGTCACCAG 3628 30 100.0 37 .............................. TTGCTAATGCCATAAGCAAATGTGAGTTTAAAACATT 3561 30 100.0 37 .............................. CTGATAAGGCAATTCAAAACTTATCATGTGTTATTAG 3494 30 100.0 38 .............................. GCAAAATCTAGTGCTCCACCAAATACTTTTTTTACAAC 3426 30 100.0 38 .............................. TAAATTTAGTTTTCCTAATTCTAAAGGCTCACCAGCAG 3358 30 100.0 38 .............................. TCATATGCCGTTGGTTTTGAAAGCATATCCCGAAATTA 3290 30 100.0 38 .............................. ATTGTAGTGCGCAGAAAGCATTATAACGAATGTTTTAG 3222 30 93.3 0 .........................T...A | TG [3196] ========== ====== ====== ====== ============================== ======================================= ================== 9 30 99.3 38 GATTTTAGAGTACCTATAAGGAATTGAAAC # Left flank : TGAATCTAAGCAATTAATAATTAATACTAAAAAATTAAAATATGATGGTTTTGGCCTAAATATAATTTAGACTCTAGGGGGTCAAAATTAAACGTAAAAAGGGGTCAAATTTACTTGACAATCTACATGCACCTGAGGATTTTGATTTTAAAGTGCATAATGCTGAACCTCGACATGAGAGATTAGTTAAAAATGTTTTAGGACTGTATTAAATTTTATGTTGTCGACCCTGAATAGAGTAAAAATTACCGGGGGTCGACGATTTTTACGTATGCAGTTAATTAGCAGCATGAGATTGGTTTTTTGAAATTCTTCTAAAGATTTTCCTGAATATTGCAATTTGGGGCAAGCTGATGTATGCTTTATTTAATG # Right flank : TTAAAAGAAAGTTTGACCAAATTACCATGAAAATAATTAACAAATTACGAATAAAAATGACTGTTTTACATTGGCTGAACATTAACATGAGATGTATAATAAATCGTGCTATTTCTAATATTATGAATAAATGTAAAAATAAATATGATATAATTAATTCATAGCTAATGTCTAAAATATGTTTTGAGTAAGGATGGATTTTGTCATGAATAGAGTTGAATTGTTAAATATAATTGAAAATGGAGAAAATTCATATATAGAATTTAAAGAGGAAGGCATAAAGGCCAAAGAATTGGCGGAAGAAATTGTAGCTTTTGCTAATAGTGAAGGCGGGACAATATTAATAGGTGTATCTGATGACGGTAAAATAAAGGGAATAACTGATAAAAACATAGAAGAGAAAATTATGAATGTGTGCAGAAATAATTGTATACCTAATATAATTCCTGTTTATGAGAGTGTGGAATTAGATGGATTAAGGATATCAGTAGTTAATATTC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTTTAGAGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 2532-136 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVXP01000133.1 Clostridium luticellarii strain DSM 29923 CLLU_contig000133, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2531 30 100.0 36 .............................. TGGCCATCATTGTCTTCTTTCCCTGTATCAATTTCC 2465 30 100.0 35 .............................. AGAAATAAAATCAATACTTAGATCTTGTGATATTT 2400 30 100.0 37 .............................. AACCTATAAAAGACCATAAAGGTTGTTCAGCTTCATA 2333 30 100.0 35 .............................. AAAGATGCAGTATATAAGATGGTAAAAAAATATAT 2268 30 100.0 36 .............................. AACTTTATATCTTCTGTGTTATAAATTATATGTATT 2202 30 100.0 35 .............................. ATATTGTGTCACCCTCTGGGAGGCTTTGGATATAA 2137 30 100.0 36 .............................. GATTATTACACTGTTTAGGAGGGAATATGAAAGATT 2071 30 100.0 36 .............................. CCATCTCATAGTTCAGCCTTCTGTAATCTAGCAAAG 2005 30 100.0 37 .............................. TATTTATCTGCCCATCTATTTACTTCTGCAATTCTAG 1938 30 100.0 36 .............................. ATGGGAGAAAGATAAAAAGACAGGCGAGAGATTACC 1872 30 100.0 35 .............................. TTAAAAAAGTCCCAGGAAAATTCCGATGGATTAAA 1807 30 100.0 36 .............................. CCAATGTGGCTGGTGAAGCTTAATGGTATATAGCAC 1741 30 100.0 36 .............................. TTAGTAAAAAATTGAATGAAAACAGGGAATACAAAG 1675 30 100.0 36 .............................. AGTTATAGAAAGGGCATAGCCTAGAGGCTACACCCT 1609 30 100.0 36 .............................. TTGGTTTTACATGTTCTTCATGCTTAACCCATTCTT 1543 30 100.0 36 .............................. TACGTGATAAAGCTTGTTTAGTAAATGTTTCATGGT 1477 30 100.0 36 .............................. AACATACCACCTAATCTATTTCTATGAAAAGTGTGC 1411 30 100.0 35 .............................. TGTAGACCATAGCCACTATAACCATGTAGAAAAAG 1346 30 100.0 34 .............................. ACCTATGCCCGACTTTTTTCTTCTGGCCGTTCAA 1282 30 100.0 36 .............................. AGATGATGTCGAAAGGCTTAAAACATTACTACAGGA 1216 30 100.0 36 .............................. TCAAGATACGTTTTAATGCTCTTAAGATAAGAATTG 1150 30 100.0 34 .............................. AAGCTGGAGATAAAATTTATTCGTATTTCTATAA 1086 30 100.0 35 .............................. TAGATGGTAGATTTAAACTAGATGTGACCCTAAAA 1021 30 100.0 36 .............................. ATACAATCACATCCAAAGGTATCTAAGTCTCTTAAA 955 30 100.0 36 .............................. TGCTTGCTTACCGGTTTCTATATTCCAATAATTTTT 889 30 100.0 34 .............................. GGTTTAACTACCGGGCTAAGCGTTGCAGGCACAG 825 30 100.0 36 .............................. GATACATAAGTGCCATTTAAAATGCCTATGCCAACC 759 30 100.0 36 .............................. AAGACTGGGTCTACATAAATTCCAAAATAAACAAGA 693 30 100.0 36 .............................. ATAAAACAAGTAAAAGCAGTAAAGCATAGATTCAGG 627 30 100.0 36 .............................. TTTTTGATGCTATTAAAATTATTTGTTATATAATGT 561 30 100.0 36 .............................. TATCCGTAGGAGTAGTAGCTTCAAAGGCAACTTTCT 495 30 100.0 36 .............................. TTGTCTGTTTTTGTTTCTACCCGTTCAGCAGATTTC 429 30 100.0 36 .............................. ATTTTTAATGAGATTTCAAGCAATGCAAAGCATAAT 363 30 100.0 35 .............................. CGCTCATAAGTACTGTGACCATAGATTTTTCAATA 298 30 100.0 36 .............................. TGGAGTAACCTATTGATTTTTGAATATACTCAATCA 232 30 96.7 37 .......T...................... TACATTCCTGCTCGTATACCCCATTTATGGCATTATT 165 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 37 30 99.9 36 GCTGAACCTTAACATAAGATGTATTTAAAT # Left flank : GAGGTATAATGGTGATTTTGTTTTTTGATTCAATTCAATTTTACCATAAATCAGTGAGGAGTTATTTTATTTTGCAGCAAGAAATATACCGCATTTATGCGGATTACAGCGTTTCGCAAACGCCTAAAAGTTTGTTATAGTTGAAGGG # Right flank : TCCTGCACCTGTTGATTTACAATATAAATTGACCCCCTTTTTACACTGAAAATTGACCCCTTCACTTTAAAATAATATCCTTTATGAGAGGTAAAAAACTCATGAAGGAGGCATAAGAGTGTAGGTGAAAGACTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGAACCTTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 153-778 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVXP01000053.1 Clostridium luticellarii strain DSM 29923 CLLU_contig000053, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 153 30 100.0 36 .............................. GGAAGCAGCAACAGGTGGTAAAAACACTGTAATGTA 219 30 100.0 37 .............................. TAGCCAAAGATCTTGGATTTCTTCCGTTTAAAAAATA 286 30 100.0 36 .............................. AGGCTACCACGAGCAATATATGTTATTTGTGGTGGA 352 30 100.0 37 .............................. TAGAGCCTGTACTTGGTTCAGTTCCATATAGTACTAC 419 30 100.0 36 .............................. AATAAAGAACCAAGGAATTAAAGATAATTTTGGTAA 485 30 100.0 35 .............................. CTTTATACTATAGGAGCTGCAGATATAAAAAAAGG 550 30 100.0 36 .............................. GCTAATTTTTGAATGGACAAACTTAACTCTATCTTG 616 30 100.0 36 .............................. CTCTACTTCCGTCATCATTAATTAAACTAACTTGTT 682 30 100.0 37 .............................. GGGTCAGATGTTGATTTTCCTTTTACAAAACATAGTA 749 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 100.0 36 ATTTAAATACATCTTATGTTAAGGTTCAGC # Left flank : CTTATGCCCTTTTTTTCTGTTTAACTATTATAAATTACAAGAATTGCCTTTGATCTTCTAATTACCTTTTTTTGAAACTTCTTCCCATCATCAATTCATTTTTATCAGTGAGTTTCGCAATTACCTAATAACAAACTTTCCATTTTCTAAGAA # Right flank : CCAATGTAAAACAGCCATTCTTTATTTCTATTATAGGACTTAAAGTCGCGTAAATAAACCATTTTCGCGAAAGTTTTCCAGTCGTTTTTTTAATATTGTGAAATTGATATGAAAAACAGCATAAAGTATTGCAAATCAACGATTTACGCTGTTTTCATTCATTTGTGAGGTTGGAAACTGAATACTGCTAATCTTCCGGGAAATAGAAATTGCTTTACAAAATAGATAAAAGAGAAAACATAAGAAATTATAAAAAAAATATAGCTTGTAATATCTAAACACCTCTGTACCTTAGACAAAAGTGGCTTTGGAATAATAAACAAATTCAGAACCGATGAATCCACTAAGGCTCAAATACTAAAGCTCCGGAATAGCCTCATCCAGCCACTTAATAGTTTTAAGATAGGAAATGGCCAGATCTTGTCTATCAATATCAAGATAAGATGCCATCATTATGCTTTTTGCCCATTCTCCCTTTTGATATGAAATAACTATGTCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTTATGTTAAGGTTCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 14114-12620 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVXP01000053.1 Clostridium luticellarii strain DSM 29923 CLLU_contig000053, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 14113 30 100.0 37 .............................. TATCAAGTTGACATGAGAGCAAAGGGAAAATATAATA 14046 30 100.0 35 .............................. AAAACAGGTGCCTATCATTTTTCCCATTTTGCTGA 13981 30 100.0 38 .............................. CCGTCAAACATAATCTTGTTGTCTTTGTGGTTGACCGG 13913 30 100.0 38 .............................. CCTAAAATGGATTCTGCTTGTTCTCTCCCGTATTTCTC 13845 30 100.0 37 .............................. CTGCAAGTGTGATTGTGGCAATGAATTATGGGTACGC 13778 30 100.0 35 .............................. TCCCCACCCAGAAGAAACAAATATAATAGGTATCC 13713 30 100.0 37 .............................. CTTTAGTTTTCAATTCTGTATTTTCTTTTGTAACTGA 13646 30 100.0 37 .............................. TATATGAGAATATATTAAATTTCAGTAAAGCTGATAG 13579 30 100.0 38 .............................. GCCGGAGATATAGTCATAGAAAATGATAATGAAGTTGA 13511 30 100.0 37 .............................. CTCCTGCTAACATCCTTTCCCTAGCCTTACCCCTTTC 13444 30 100.0 37 .............................. TTATGACGTTTATAACGTTTCCCACAAACAGGGCAAC 13377 30 100.0 36 .............................. TTCTAAATACTTACAAGAATAAATTCAATATATATG 13311 30 100.0 36 .............................. TAATTGCAGGAAGTTTGGCTGGAGTTGTTTTGCTGA 13245 30 100.0 37 .............................. TTTTGACATGCAGTAGTGCCTTTCAATGCACTTTTCA 13178 30 100.0 37 .............................. TCTCCAATAGGACAAGGAGTCCTTTTCAAATGTTTAG 13111 30 100.0 37 .............................. TATCGTCATGTGTGTCGGTCTTTTCGGAGAGGTTTCC 13044 30 100.0 36 .............................. TCTTTTTCATCAAGTGCAAATATTAAATACAAGTCG 12978 30 100.0 34 .............................. CTATTAAGTCTATTAATATAACTTGTATCGGCAG 12914 30 100.0 37 .............................. TTCCGATGCTATAATTTTTGACTTAACGCAGGGGCAG 12847 30 100.0 35 .............................. CTTTGTCATAGTATTTGTTGTAGACAGTTATATCA 12782 30 96.7 36 .............................C TATTTACATCCTTATACTTCCTTACAGTAGTTCTTG 12716 30 96.7 37 .............................C ATATGAATGATATTAAAAAATTAGATCTAAAAATAAA 12649 30 93.3 0 ........................A.T... | ========== ====== ====== ====== ============================== ====================================== ================== 23 30 99.4 37 GATTTTAGATTACCTATGAGGAATTGAAAT # Left flank : CGTATAGTGGTTTTGTTGCGAGGTGGTAATCAGTGTTTGTAATACTTGTCTATGATTTTGGGGAAAAGCGTGTAGGCCGCGCTCTTAAAACATGCAGAAAGTATTTAACCTGGGTTCAAAATTCCGTTTTTGAAGGAGACATAAGCATGGCTAATTTAAAGAAATTAAAGTGCCAGCTTTCTGACATCATGGTAAGCAGTGAGGATTCAGTGATAATATATACTTTCAAAAGCACTAAATATTCTAATAGAGAGGTTCTTGGCGTGTCGAAAAATCAACAGGATATATTTTTATAAAATGGCGTGATTAATTTTCAAAAAAATTTTAGGACTGTCTTAAATTTTATGTCGTCGACCCTGAATAGAGTAAAAATTACCGGGGGTCGACAATTTTTATATTTCCAGTTAATTTGCGGCCTGGGATTGATTTTTGAAATTCTTCCAGAGATTTTCCTGGATATTGCAATCTTGGACAAGCTGATGTATGCTTTATTTGATGGG # Right flank : ATCAAAAATACTTTTTTCTAGAAGTGTTGATATTACTTGTATTGTGGGCATGTTAGAATCTTACATATGCCCGGTTGGTGACAAAATTATTTATCCTTAAATATGCCTTTGAATTGGTCAAAGTTGGAGGTAGCATTTTATGACATCTATACAACCAGCACAGAAATAATTTTAGCCCGGTAGGTTATCCCCGCCGGGCTTTATTTTTTATGCCTTTAACCATTGATGTTTAGCTTCTGTTTTATAGCTTCCTGTAATAGCTGGGAAAAGTTAATTTTATTTTCCTCTGCTTTAAACTTTAACCATTGCGGCATAGTTACATTGGTATTGACAGTTTTGTTATTCATCTGTGCCCTTGCAAGTTTCATATCTGCAATTATAGGAACAACAAAATTTCCATCTTCAATTTTTATTCCTTCCGGTGGTGTAGGTTCTGGAATCTCTTCTTTGCCGTCTTCCATGTTCCAAAGGAATAATTCTAATCCATCTTTTGCCATTGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTTTAGATTACCTATGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 15744-16305 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVXP01000049.1 Clostridium luticellarii strain DSM 29923 CLLU_contig000049, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 15744 30 100.0 36 .............................. CTGGTTCTTGTACTAAAACCCATTTATCGTCAGTAG 15810 30 100.0 36 .............................. TTCTCTGGCATATGGCAAAGCCTCAATCCATTTGCA 15876 30 100.0 37 .............................. AAGAATTAAATCCACGTGGTACCCGTTTATGCTTTTC 15943 30 100.0 37 .............................. TTATAGTTTTATGAAACTATAAAGTCAAGAGGTAATA 16010 30 100.0 37 .............................. CCGGAATATTTATCAGCTAAGCTTTGCCAATATGAAG 16077 30 100.0 37 .............................. CCGTATACTATAATGTAAAGAGGTAAATGTATGTCTA 16144 30 100.0 35 .............................. ATAGTATTAATTTTTTTTATTCCTTTTGCTCCAAA 16209 30 96.7 37 .............................C AACATTATGGCATCCTTCACGGAGGGATTTTCTTTTT 16276 30 83.3 0 .......................AAA.T.A | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 97.8 37 GGATTTAGGATACCTATAAGGAATTGAAAT # Left flank : TGGCTTATAGTTGGGGCTGTGTATCTTGCTTTAAGCACCAGGGGATTTAAAAAGGTACCGCCTGTTTTTAAAGGAATGTGACAGAATTGGCCTTCAATTGATTTTCCAGCTAATTGATGTGGCCTTTATTTACAGCAGGATTTTGAACCTGTAAAATATATTGAAAATTCAACTGAGATTTGTTTTTATGTGGTTTATTATGTGGTTTATAAGGATGATGTCATTTAAGCTTTTATGTGGATCTAACAGTTCAAGTTTCTGTTATATGGGTTATGGGGGAACGCTGAAAGAAAAACTTTGTATTATTTAAAATTACTTTGCTGCGGTTTTGAATTTTATATAGCTTTTGTTGTCGACCCTGAATAGAGTAAAAATTACCGGGGGTCGACAATTTTTATGTTTCTAGTTAATTTGCGGCCTGGGATTTGTTCTTGAGATTCTTCCAGAGATTTTTCTAGATATTGCAATTTGGGACAGGCTGATGTATGCTTTATTTGATG # Right flank : AAATGTTTGAAAGGAACTTAGATGAGAAAACGGCATTATTATAAAGGTGAACCAATGGATATGTTGCATACGGTGGCATTTAAAGAGATGTACCCTATTATTTCCTGTATAGTAAAATTATCCTCACCAATCAATGTGAATCGTCTTAAGAAAGCTGTCGAACTTACAAGTGTGCAAATTCCTGAAATTTTATGCCATTACCAGCCTGGGAAAAATCGATGGGTTTATTCATCAGAATCGAATCACACAGTGGTCATCCAATTGGGAGAAAATGATGATCTCTTTCAGCAGCCCGTTGATTTTTTAAAAGATACCCAGCTTAAAATTTTTATAAAAAATATACCGGAGCCTATAATTTACATGGTAATGAGTCATATATTCACAGATGGTTCAGGCTTTAAACAATTTCTTTATTTACTGGCTAATAATTATAATCATAAGGAATTAGCCTCAAATTTTCATAACCAGCGTTCAAGTGAATCCATTATAAAGGCATTACT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATTTAGGATACCTATAAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.40,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 18844-20783 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVXP01000049.1 Clostridium luticellarii strain DSM 29923 CLLU_contig000049, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 18844 30 100.0 35 .............................. ACATATTACGAGAAAAATAACAATATCGTGAATTA 18909 30 100.0 37 .............................. CGATTTTTTACTATCTATTGCACTGGCTTATATTTTA 18976 30 100.0 36 .............................. GCATATTTTTTTATCCTGCTAAATCTAAGTAAATTT 19042 30 100.0 34 .............................. TTATCATAAATATGTGTAAGTTGTTCGAGCATAA 19106 30 100.0 37 .............................. TTAAATGGAACAGTCTCCTTAATTTTCCTCTTAGAGG 19173 30 100.0 36 .............................. CTTTCCAATTTTGTCTTAAAAGCATCCAAAGTTAAA 19239 30 100.0 36 .............................. GTATAGGTTCTGTGGGAACTTCCTCTATAGAATACA 19305 30 100.0 36 .............................. GGAACAGGGCCAGCAATAGATGCAGGAACAAAATGC 19371 30 100.0 36 .............................. GGCTAATAGATATATGGGAGATAGCACCTTTGTAAA 19437 30 100.0 37 .............................. GCCCCACAGCATTTACATTTCCGTAATTTTACCATGC 19504 30 100.0 36 .............................. TGGGGGTGTAAGATGAAAAACAATTTTATCAGGATA 19570 30 100.0 34 .............................. GCGACATAGAAACAGGTAAGAGCATAGCAAACAT 19634 30 100.0 36 .............................. AAGTTTTGGGAACACAGCCAGATGAAGGCCTAAGTC 19700 30 100.0 36 .............................. TCATTATTGTTCTGATATAGCTGCCTTGCAAGCTCA 19766 30 100.0 36 .............................. ATGATGAAGCAATTTCAAACGTGGGAACCAGTGGCA 19832 30 100.0 36 .............................. GTATAAAGGTATTGGTGTACCAGTAGAATATAATTC 19898 30 100.0 36 .............................. TAGACATTTAGAGAGTGTTCTGCTAGTCCGCCTTTA 19964 30 100.0 36 .............................. GGCTCTTAAATTATATTATCCTGAAATACCACCAGA 20030 30 100.0 36 .............................. ACTTTATACGTGAACGTATATGCCCCCGCGTGTGTA 20096 30 100.0 35 .............................. AGTATATAGCCACTTTTTTCTGAACCATGATACCC 20161 30 100.0 36 .............................. CGTATTATGTGCCATTGTTGGATTGGTGGATATGGC 20227 30 100.0 37 .............................. TGTCAACATATCCAGAAACACCCGATATCTGCCCCTT 20294 30 100.0 35 .............................. TCATCCGGCCTTTCAGCATCCCCGTCACGTAAAGG 20359 30 100.0 37 .............................. AAAGATATCGCTACATCTGATAAAGAACAATTAATTG 20426 30 100.0 34 .............................. GATTAGGAATAAGTATTCCGGAACGTTTATTTAG 20490 30 100.0 36 .............................. GTCTATGCGGGTAATATAATTCATAATAACAATCCT 20556 30 100.0 36 .............................. GTAGACTTTAATTCCTCCGCCACTGGGAACGGAAAG 20622 30 100.0 36 .............................. ATAATTGGCTTTGTTTTAGTTTTAAAAGCATCCATA 20688 30 100.0 36 .............................. AATAGCATGAAAGTAAATGGATCTGCCAATGTAGGA 20754 29 83.3 0 .C.............A....-....G...A | G [20777] ========== ====== ====== ====== ============================== ===================================== ================== 30 30 99.4 36 GATGAACCTTAACATGAGATGTATTTAAAT # Left flank : AAGCTGCCTACAAAAGATGACTTTTCCATAAGCCCTCTTAACAGAAAAAAACTAAAGGAAAGAGTGGTTATTTATAAGGGTTACGTTATAAAGGGATGGGATGGAGAATTTTTAATTGAAGGTTCAAAGGAACTCATGGATATAGCTTATAATGCCGGCATCGGCTCAAAAAATTCTCAAGGTTTTGGATGCATTGAGATAAAGAAATGAGCTATTCCCCGAACAATTTATTCCTTGAGATTATGAACAGAGCATAAGTAAATTACTATACGTTAGATTTTCTTATGCTTTATGTAATTATCCTGAAAAACATTGCAGACTTATTTTCCAACCTAATTTATAAATGAAGGCAGCAAAAACCGTTGATTTTCAATGCTTTATGCTGCTTTTTTTATATTGATCCCAGAAAACTAAAAATGCCTGGAAAATTTTCAGGAAAACTCTTTATTTATGGGATTTTAAGTCATATAATAAAAATAAAGAATGGCTATTTCACACAG # Right flank : ATGTTTTAAAATTTGTATTAATTTTTTGTCGTCGACCCTGAATAGAGTAAAAATTACCGGGGGTCGACAATTTTTATGTTTTCAGTTAATTTGCGGTCCGGGATTGGTTTTTGAAATTCTTTCATAAATTTTTCTGGATATTGAAATTTTGTACGAGCTGATGTATTCTATACTCGATGGGGATTTTAGGATACCTATGAGGAATTGAAACGTTTTATCAAAACTAAAACTATCCACATATAAAAGGGGATTTTAGGATACCTATGAGGAATTGAAACGTGGATAAGGAACTTAAAGATGCGCTTACGAAATTGGGGATTTTAGGATACCTATGAGGAATTGAAACGCTGGAGCAGTAGCAAGGTTCTGTATTCTAGCATTTTGATTTTAGGATACCTATGAGGAATTGAAACGATGCTATGTCCTTAAATATTTTTCCACTATCAGTGCGGATTTTAGGATACCTATGAGGAATTGAAACACTAATGTCAGAAGTCCTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 20964-21935 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVXP01000049.1 Clostridium luticellarii strain DSM 29923 CLLU_contig000049, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 20964 30 100.0 37 .............................. GTTTTATCAAAACTAAAACTATCCACATATAAAAGGG 21031 30 100.0 38 .............................. GTGGATAAGGAACTTAAAGATGCGCTTACGAAATTGGG 21099 30 100.0 37 .............................. GCTGGAGCAGTAGCAAGGTTCTGTATTCTAGCATTTT 21166 30 100.0 38 .............................. GATGCTATGTCCTTAAATATTTTTCCACTATCAGTGCG 21234 30 100.0 36 .............................. ACTAATGTCAGAAGTCCTTCGTTTATATCATCTGTG 21300 30 100.0 36 .............................. ATATTCCTTCACAGCTTAATCCTGCTCCTGGTTCTG 21366 30 100.0 37 .............................. TTGAAAAATCGACTAAAGTAATTTTGAGTAATGCAGT 21433 30 100.0 38 .............................. TTTTATCACAGAACAGGATAAAAGCAATAGAAAAATGG 21501 30 100.0 37 .............................. TGAGTTCAACTGATAAGACTAAATTAAATGGTATTGC 21568 30 100.0 37 .............................. CCGATACATAAATATCAGGGTCATCAAACATTACATT 21635 30 100.0 37 .............................. TTGTTTATAACTTCATGTGTCCTTTTCCACCCTGCCA 21702 30 100.0 38 .............................. TTTGAATACTCTGCTAAACAAAGATGCTTTAATTTTCC 21770 30 100.0 38 .............................. ACCAATCTTTCAATTGAATCAATTCCTGTATCATTGAG 21838 30 100.0 38 .............................. TCCATATCCTCGTCGCCTGTAGCCGTTGGTATACCTAA 21906 30 96.7 0 .........................A.... | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 99.8 37 GATTTTAGGATACCTATGAGGAATTGAAAC # Left flank : ATAAGTATTCCGGAACGTTTATTTAGGATGAACCTTAACATGAGATGTATTTAAATGTCTATGCGGGTAATATAATTCATAATAACAATCCTGATGAACCTTAACATGAGATGTATTTAAATGTAGACTTTAATTCCTCCGCCACTGGGAACGGAAAGGATGAACCTTAACATGAGATGTATTTAAATATAATTGGCTTTGTTTTAGTTTTAAAAGCATCCATAGATGAACCTTAACATGAGATGTATTTAAATAATAGCATGAAAGTAAATGGATCTGCCAATGTAGGAGCTGAACCTTAACATAAGATTAGTTGAAAATGTTTTAAAATTTGTATTAATTTTTTGTCGTCGACCCTGAATAGAGTAAAAATTACCGGGGGTCGACAATTTTTATGTTTTCAGTTAATTTGCGGTCCGGGATTGGTTTTTGAAATTCTTTCATAAATTTTTCTGGATATTGAAATTTTGTACGAGCTGATGTATTCTATACTCGATGGG # Right flank : CTAAGCAGGTAATTGGAGCAATTATACAATCAGATTATGCTTGGTTTGCTGCTCCAGTTTTTATAGCCTTTCAAATGCTTTAGGGTCTGGAACAACGAATGATAAAGTTTTTTAAGCAGTAGCTCAGCAGGCATAAATGAATTTATTACTACTACGTTATCTAGAACTTTTTATATAAATAAAGATCCAATTAGTCCTAATACGAATTACAATTATAGATAGGCAAAGATGATAAATTTGAGATTGGGATGATGGTGCTAAAGAATTAGAGATAGCTTTTTTATTTTGCCTTTATTTTATTGTACTAATATGTTAATATGTTTTTCAAAAGGTACTATTGAAAGGCAGATGAAGTTATGGATACTAAAATAGTTCAGAAAAATGGTAAATCAATTGCAATTATTCAGAGTAATGATATATTAATAAAAGATGTTCAATCAACTTTGGATTTTATAGCAACTGTTTCATATGAATCAGAATGTTATAGAATTGCTTTAAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTTTAGGATACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.40,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 275-505 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVXP01000062.1 Clostridium luticellarii strain DSM 29923 CLLU_contig000062, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 275 29 100.0 39 ............................. CCAATTTTCCATCAAACAGCAAGGTTACAATAAATAATT 343 29 100.0 38 ............................. CAAATTACTGTCGAAATGATATACATAATCACTGTCAT 410 29 100.0 38 ............................. CCAGTGGAAAGCTTACTTTGCAATGTAGTTACTTTAAC 477 29 89.7 0 .......................A.T.T. | ========== ====== ====== ====== ============================= ======================================= ================== 4 29 97.4 39 GTTTTTAGATTACCTATGAGGAATTGAAA # Left flank : CAGCATGATTGAAACGGCTAAAGCTAATGGATTGGAGCCATACAGCTATCTTGAATTCCTGTTTAAAAATCTGCCTGGTGTCCAATTTGAAGCACATCCTGAATTCTTGGAAGAATACCTGCCCTGGAATCCATGGGTTCAGTCTTCCTGTAAAAATGACAAGTGATAGATTACGACCATTTGAGATGTATTTCAAATGGTCACTTATTTTTTACCTACACCAGGTAATTTATCGCTTACTTTTGGACAAGCTGATGTATGCTTTATCTGATAGG # Right flank : ATATAGATATTTCTAAAGGAGATTGTCTGAAAAAAGTGAACATTTTATGATATGAGCATATTATAAAATGTAAAAGTTATGAAAGCAGTGATAAAATGTATTTATGCCCGGTAAAAATTTTTTTTAATAGTCTTCAGGAATATAATAGATCAAAAATAATGAATGAAAAAATTCATTTTAATTATGCATATCCTAACCACAGATATTATGATGGATATTTCCGTAACATGAATGTGCGAGGAGATATTAAGAATGTATCAAAACTCAATTTGAGTAATAAAATGCGTATGCTTTGGGAGCAGCATGTTGCTTGGACGAGAATGCTTATAACAAGCATAGCTTTTGATTTACCAGATACAGAATTTATTACTAATCGCCTTCTTCGGAATCCCATAGACTTTGAAGAAGCATTGAGAAGTTTTTATGGTGATGATATTGCCTCTCAATTTAGAAATTTATTTAGAGAACATCTTACTATTGCTGCACAGCTTGTTAAATCA # Questionable array : NO Score: 8.73 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGATTACCTATGAGGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 5181-506 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVXP01000087.1 Clostridium luticellarii strain DSM 29923 CLLU_contig000087, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 5180 29 100.0 39 ............................. AAAGATTATATTTATCCCGTAAAATTAAAAGCTGTTAAA 5112 29 100.0 37 ............................. TAGCCAGGTGCCAGAGCTAAGTGGCTCCGCACAATCT 5046 29 100.0 37 ............................. CATCTTGGATTTTTCTTTTACGATTCTACAATAATCT 4980 29 100.0 36 ............................. AAATGTAATAGACAGCGGTTTTAAGGCCAGTATGGC 4915 29 100.0 36 ............................. TAAAAGAAAGTGGAGAAAAATTTAAAACCGTAGGAG 4850 29 100.0 37 ............................. AATAAAGGCCAGGGCGGATGAATCTGCCAGCAGGTAT 4784 29 100.0 37 ............................. TGAGAATTTTTATTACCTCCCTTGCTTTCATTTTCTT 4718 29 100.0 37 ............................. TTTGTAGCGGTAGTGGTGCGACAATTGCAATTACATC 4652 29 100.0 36 ............................. ACCTTAAAGCCGTATTGTGGAAGCATAGAAGCACGG 4587 29 100.0 37 ............................. ATGGACAGATGATGTTGATACATTATCTGTTACATTG 4521 29 100.0 37 ............................. ACATAAAATGTTGTAGACAATTAGAAGTCTTTAAAAG 4455 29 100.0 37 ............................. TACCACAACTTGTAAGTAATAGATTTTCAACATGTTC 4389 29 100.0 36 ............................. ATAGGAGCATATTGTACAGTACAAAGTGCAGTAGGA 4324 29 100.0 36 ............................. AAATTAGTTGGATATATGAAAAAATATGGAGCACTT 4259 29 100.0 37 ............................. GAAAAAATATATGTAAAAGATTTTGTAGAATTATCTA 4193 29 100.0 37 ............................. CATGGATTGAAAGAATTATTTTATAAGTATTGTAAAA 4127 29 100.0 37 ............................. AATAATTGTGTAATCTTTTTATCCTGGTCTATAACTG 4061 29 100.0 37 ............................. TTAAAGGAGGACTGAAAATGCGTGAAACAGATATGAA 3995 29 100.0 37 ............................. ACGCCACACCCTAACTGTTTATGTACTCAATACCCGA 3929 29 100.0 37 ............................. CTTAAAACAGCAATGAAAGAGGCGGATGAAAGGATAG 3863 29 100.0 37 ............................. TAGATAACATTTCATATAAATGGGCGGCAAAAGCTAC 3797 29 100.0 36 ............................. GATAAATTTTCAGACATTTTAATTAATGAATTCCCC 3732 29 100.0 37 ............................. TTCTACAATTATATATTAACACGTATTCGTGTCTATG 3666 29 100.0 36 ............................. GAAGAAAAAAGTCGGACATAGGTTTGACATAAAATA 3601 29 100.0 35 ............................. GATATATGTCCAAGTAGACGAGGAAGACGTGAGGA 3537 29 100.0 37 ............................. TATGAAGCCATGTTTCAATTCTATGCCAGGTATCATC 3471 29 100.0 37 ............................. TAGCATCATATAGATTAAGTTTTTGTACTCTTTTACA 3405 29 100.0 35 ............................. GTAGAAAATTTAAATTCATATAATTTGGCAAAATC 3341 29 100.0 36 ............................. ACTTTTTAGACTTTCGGAATTCCTTTCCCATAACGG 3276 29 100.0 35 ............................. TTATAAGCCATTTTTTTCATCCTCTTAGTGGAAGG 3212 29 100.0 37 ............................. TAAAAAGTTACACCCATTAGATGCACACATGATTAGG 3146 29 100.0 36 ............................. ACAAAAAACGCATCTTCTAATAGAAAAATAACATTA 3081 29 100.0 36 ............................. TGATAAAAACAATAGGAAAGATTTTTAAAAAGTATA 3016 29 100.0 36 ............................. TTTAATTAGCTTGTTATATTCCTGCTTCAGCTCTTC 2951 29 100.0 36 ............................. ACAATGGAGGATTTGCAAAAACAGATGGAAAGTTTA 2886 29 100.0 36 ............................. ACGCAGGAATATTGTCAAGGGAATTTTATAAGCTTT 2821 29 100.0 36 ............................. CTTAGGAGATCTATACCGATATTCAGCTCTATATAT 2756 29 100.0 37 ............................. TCGAATATTGTGAGTTGGAAATCTGGAAAATCGCTCA 2690 29 100.0 36 ............................. ATGTAACATTTAAGGACAGCAGAACAACCCAGACAG 2625 29 100.0 36 ............................. GACAAAATGGTAAATCTATTGGTAATGCAGTGCCAG 2560 29 100.0 36 ............................. AGGATAGTAGATGTTATAGAGGAATTGAAAGACCAA 2495 29 100.0 36 ............................. TAAGTAGTGGCGGAGATTTAACTGCGTCAATACCTT 2430 29 100.0 36 ............................. AATACGGAATATTCTTATCAAGTAAGTACTGTAAAT 2365 29 100.0 36 ............................. GAGTCCAATCTGTGGCGGGTGCGTCTGCAAGTCAAA 2300 29 100.0 37 ............................. TCTAATCCCTTTTCTTTAATAGCTCCCTTAATTCCAT 2234 29 100.0 36 ............................. TTTTAGCAAGCTGTAACATACTATCCCTCACACGTT 2169 29 100.0 36 ............................. GTGATGAAGCAGCAGAACAATCTAAACAAGCGTCTG 2104 29 100.0 35 ............................. ATAGGTGAACCTGAATCGTTATATAACATTAGCAT 2040 29 100.0 37 ............................. TTTGCAGGAATAGGTTCAGAGGGATATGAAGCTGTTA 1974 29 100.0 38 ............................. ATAAGTAATTTGTCCTCATACTGCTTGGATAACTCCAA 1907 29 100.0 35 ............................. ATGAGTCAAGGTAAGCCAACAGAAGAAGGAATGTA 1843 29 100.0 36 ............................. TAATGGTTCCTGCCGGTATTGTAACTTCCCCGTATA 1778 29 100.0 37 ............................. TAAGCTTGGATAAACTTCTAGCTGCATCTTGGGATAT 1712 29 100.0 36 ............................. TAAGCTAAACCAGTCGCTACTTCTACTTCAACAACA 1647 29 100.0 37 ............................. GAACTCTAGGAAACAAGGCGTCCCAGATATGTAATTC 1581 29 100.0 37 ............................. GATAAATACTTGTCTGCATGCGCAGGAGTACCTAAAA 1515 29 100.0 37 ............................. TCGGATAATGTGGGAGAATAAGACGCTTCAGACGCTG 1449 29 100.0 36 ............................. TGCTATGCTTATTACAACTCTTACAGCTACTTTCAA 1384 29 100.0 36 ............................. AAATAAAAGGATTATACAATTGTTTGGGTGGGGCGA 1319 29 100.0 36 ............................. GTGCCTAATTTATAATCATCCTGGGTAGCGAAATCG 1254 29 100.0 36 ............................. TAAATATGGTTCTACCATTGCTAAAATAGGGAATAT 1189 29 100.0 36 ............................. GTAAATGAATAGATATCAGAGACTCTTTAACCAGGC 1124 29 100.0 36 ............................. TACAGAAGATGCGTACTTTCTCCAAACTTGATGTGA 1059 29 100.0 36 ............................. TCAAATTGCCACTCCCCCTATCCATTCAGGTAATAT 994 29 100.0 37 ............................. AGATAATAACTAGAATTTAAGAGGAGGCACATCCCTA 928 29 100.0 36 ............................. TTAAAAGAGTCAGATCATTGCATGGATGCTGTTAAA 863 29 100.0 37 ............................. ACTACTAGAGATGGATATGGACTTACAGATGTTTATA 797 29 100.0 37 ............................. AGGGTAATTGATGTAATGGAGGAATTAAAAGATCAAT 731 29 100.0 37 ............................. ACACATATCTGGCCATAGCTTTCTTCTTTGTTTTTGC 665 29 100.0 37 ............................. TGACTATCAGTATATATAACGGCCAGGGAATTTTTTC 599 29 100.0 36 ............................. GTTTGTATTGTTCTTTTTTATACTCAGCTTCGCTTT 534 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 72 29 100.0 36 GTTTTATAAGAACTATGTGGTATGTAAAT # Left flank : AATATTTCATTGGTGATGAAGTTTACAAACCGTTAAAGGCATGGTGGTAGTGTGTTTGTTATATTGACCTATGATATTGGTGAAAAAAGAGTAAATAGAGTGAGAAAAATTGTAAAAAAGTATTTGGTATGGACACAAAATTCTGTTTTTGAGGGAAATATAACAGAATCCAAGCTTCATAAATGTTTGTCTGAAATAAATAGAAGTACAATAAGGTCAGAGGATTCAGTTTATGTGTATAAGGTACAAAATTCTAAGAATATAACGAAAGGTGTAATAGGTGTAGAAAAAAATTATGACGAATTGTTTCTTTAAAAGTTTGCAGTAAAGCTAAATTTTTATAAAATGGTGTAAAAACGTTGATATTGAAGCTATAAGATGGTTTTGTTATAATATTAACATGCATTACTGGTGGTTTAATGCAACTGCATTTAATCTGAGAGCTTTATAAAATACTATAAAGCTTGCAATATAAGGGTTTAGAGTTTTTTGAATTTTGG # Right flank : ATTCTTTTTCCTAGCTCTCGTTGTATATGTCAACAACTTTTTAGGTCAAAAGGCCATCCAATTTTAGGTCACTTATCCTCCAAAAATATACACTTATCTATAAGTGCATATTTTTAAAGATGATGAGTCATGGTTAAATAATTTTTCCACTTTCCTCAAATGTTTCCCTAAGGCGGTAGGAATCACCTGTCATATCCACTATATATGCTTTATGGGTAAGCCTGTCCACCATTGCACTTGTAATCACGGGATCACCAAACACTTCTTCCCACCTGTCAAAAGAAAGATTTGTCGTTATTATTATAGATTTTCTTGATGCCCGCAAAGAAAGGTTTGTAAACAAGAGTTCTGCTCCCTCTTTGTCAAAAGAGATATATCGTAAGCGTCAAACAAGAAAGTGGATGGAAAGTGTTCAAAAAATGTGAGATAATCTTCTAAAATAAGTTTTAAAGTTTTTCAAGTTAGCTTTAAAAACTTTAAAAAGGAAGGTTTTATATGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATAAGAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1767-283 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVXP01000095.1 Clostridium luticellarii strain DSM 29923 CLLU_contig000095, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1766 30 100.0 36 .............................. ATTGGAACGTGAGACTATAGCTGAAAGGATCAGAGA 1700 30 100.0 37 .............................. AGCTATTTATACTATAACTAATACAATAATGAATAGG 1633 30 100.0 37 .............................. TTGACTACATGGTATTTAGCTGTGAAGTCTCCCAGTT 1566 30 100.0 36 .............................. CCCCTTTAAATTTATTTGAATATTCTGTTAAACATA 1500 30 100.0 36 .............................. AGCTCGATAGGGAAACGGGCAGGGTGGCATGGGTTA 1434 30 100.0 35 .............................. AAAGCACTAAATCCGATACTTTCCATTAATTCAGC 1369 30 100.0 35 .............................. ATTAATTTCAAATAAGTTTTACCACCATGCTTTAC 1304 30 100.0 36 .............................. CCTCTATCTAATACTTAAGGCTGTTCCTTGCTTAAT 1238 30 100.0 36 .............................. GGCGTACATGTGCAACTATAGCCCACAAAAGAGGTA 1172 30 100.0 36 .............................. GTCCATTGAAAGAACTTGATTAAGATAGTTTTCCTA 1106 30 100.0 35 .............................. CTGAAATATAGCTATTTCCCCATGCGCTAGCATAC 1041 30 100.0 37 .............................. TAGTCTTTATATATGACTGTTTGTTTTCCTTTATTTA 974 30 100.0 36 .............................. TCTTTAAACTCCAAACATCTTTCTAATATGTCTTTA 908 30 100.0 37 .............................. TTCCTGGACTGACAAACTTTAATGCTTTTCCGCCTAT 841 30 100.0 36 .............................. AAATTTGAAGAAATGTACAGAATGGGGAAGATTACA 775 30 100.0 36 .............................. TCATTTAAATTTTTTAATGTTTGCATAAATAAGTTT 709 30 100.0 36 .............................. TACAATAGAAAATAGTCAGAAAGGTACCTGGTTTAT 643 30 100.0 36 .............................. AGATAGTGCCAAAGGCGGAGCACAATTGATCATACG 577 30 100.0 36 .............................. AAGATATAGTGAGGTCTTATAAGTTCCATTACCGCA 511 30 100.0 36 .............................. AGCCTGTAAACTGCATAACTTCGAAAGGTCTTTGCT 445 30 100.0 36 .............................. TTAAACTGATGTTTATCTCCATTAAATCTAACGTAA 379 30 100.0 36 .............................. CCTGCACCCGAGGATTTTGATTTTAAAGTGCAGAAT 313 29 80.0 0 .........CG.T.......-..G.....A | AA [297] ========== ====== ====== ====== ============================== ===================================== ================== 23 30 99.1 36 GCTGAACCTTAACATGAGATGTATTTAAAT # Left flank : TTAAAGCATATGATGTAAGAATTGGGGGGCAGTGCTTTATGGCGAAAAATTTTAATTTCAATTACGCCTTTGTATTTTATGATGTAAATGAAAAAAGGGTGAACAAGATATTTAAAATATGTAAGAAATATTTTCATCACCATCAAAATTCTGTTTTCAGGGGAGCTATAACTCCTTCGAAATTGATAAAATTGAAAAGTGAATTGAACAAAATCGTGGAGGGAACAGATTTTGTAACAATAATAAAACTTATAAATGACAGCTGTTTTGATGAAGAAACTTTAGGAGTAAATGTAAATAATACCGAAAATCTGATACTCTGATTTTTCCAACCAAGTTGAATTTTAAAAGTGTTTCAATGTGTTGAATTGAAATGGATTGAGGCACTTTTTTTATTTTCTTTTAAAAAAATAAAAATGACTGGAAAACTTTTAAGAAAATGCTTTATTTATGCGGTTTTAAGGCATATAATAAAAATAGAGAATGGCTATTTTACATTA # Right flank : AAATGTTTTAGGACTGTATTAAATTTTATGTCGTCGACCCTGAATAGAGTAAAAATTACCGGAGGTCGACGATTTTTACGTCTGCAGTTAATTAGCAGCATGAGATTGGTTTTTTGAAATTCTTCTAAAGATTTTCCTGAATATTGTAATTTTGGACGTAAGCGTCAAACAAGAAAGTGGATGGAAAGTGTTCAAAAAATGTGAGATAATCTTCTAAAATAAGTTTTAAAGTTTTTCAAGTTAGCTTTAAAAACTTTAAAAAGGAAGGTTTTATATGGATGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //