Array 1 313911-310720 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSJO01000003.1 Olsenella sp. AM30-3LB AM30-3LB.Scaf3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 313910 33 100.0 35 ................................. CTTATCGCGACCGCGCTCTTTCCGGAAATGAGGAC 313842 33 100.0 35 ................................. CTTGAAAGTCAAATCAAAGTCTTCGTGAATGTGGA 313774 33 100.0 35 ................................. TGGTATGCGTCCTTAACCGCGTCGTGGAGCTTTAC 313706 33 100.0 35 ................................. GCGTCCCAGCAGGGGTTGTGCGTGGTGCGTATGAC 313638 33 100.0 35 ................................. ATGGCGCGGTAGGTCGCCGTTGGCAGCGTGAGCGA 313570 33 100.0 36 ................................. TTCTGTGCGCAAGGTCTTTTAGCCTGCGTGCGTCTG 313501 33 100.0 35 ................................. GCGTACCGGCCAGAACCTATGCGTCAATCAAGCGC 313433 33 100.0 34 ................................. TGAATAAGGGTAAATCCCTTGGTTGTCTTCACGG 313366 33 100.0 35 ................................. AAGCGAGCCATTGACCGCAACGACGATATCCACAT 313298 33 100.0 34 ................................. ATTGACACAAGGGACATTGTACAAAGTGTGCCGG 313231 33 100.0 34 ................................. ATCGAGCGTCTACCGCCTTCCCGAGCTGCTGGTT 313164 33 100.0 34 ................................. CTCATTGAATTGCAGGGCAGGGGAAGAGCGCAGG 313097 33 100.0 34 ................................. ACCTTTGGAAGGAACTCGACCTTGTACTTGTAAA 313030 33 100.0 34 ................................. CTCGCTGGCGCTCTTAGCAAGATTAGCGTCTCGC 312963 33 100.0 34 ................................. TGGTAGGTATCCTTGATTGCGTCGTGGAGCTTAA 312896 33 100.0 35 ................................. CGCCACATCGTCAACTCCTATGTCGCATCGCGCAA 312828 33 100.0 34 ................................. TGCCTTGAGCAGTGCAGCGCTTCCGCCACATCGT 312761 33 100.0 34 ................................. CTGAATCTGCTAAAAATACCCACATTATCACCTC 312694 33 100.0 32 ................................. TTCTCGGTGGCACCAGACGGTGCGTTGTCAAA 312629 33 100.0 33 ................................. TCTTACGGCAGACAAAAGGAATCAGCTGCTAAA 312563 33 100.0 35 ................................. AAGGCGCGTTCGGAGTCCTTGGGAACGTCTATAAA 312495 33 100.0 34 ................................. TACAGCGCAGAAGTTGGAATCAGCCGGTTATAAC 312428 33 100.0 34 ................................. TGAGATTGCGCAATCGCTAAGGCAAACGCCAAAG 312361 33 100.0 34 ................................. CCGAAGATAGTGCAGAGCGTGGTGAGGTTCTGTC 312294 33 100.0 35 ................................. CTCAGTGAACTGGTTGTCGGCATCCGACACACCAA 312226 33 100.0 34 ................................. ACGCTCATGGGGACATCGTCCGACGACCTTGCCG 312159 33 100.0 33 ................................. CCAAAGTCATGGACGGCTGGAAAGGCGCCCGGA 312093 33 97.0 33 .....A........................... ACCTATTTTAGCAGGTAGAAGCGCATGGGTCAC 312027 33 100.0 34 ................................. TCGAACGCATGGACCAAGGGCATCGCGAATGTGA 311960 33 100.0 35 ................................. GTCTACCTGAGCGAGATGAGCGCAGGAGGGCTCGA 311892 33 100.0 34 ................................. ACGCTGTACGGCACCGCGGCCACGGACAGCTCCG 311825 33 100.0 34 ................................. GGCAGAGCGGCTGACGTGCGTGGGCTCAACCGAG 311758 33 100.0 35 ................................. AGGCTCCATGATATCCACAAAGACGGTGGACTTTG 311690 33 100.0 34 ................................. AGAATCTGTGTCACGCTTGGGACAATGACGCCAT 311623 33 100.0 36 ................................. AAGGCGCGTTCGGAGTCGCTTGGAACGTCAATCAAG 311554 33 100.0 33 ................................. CCGCGTCTGTGCTGTGTGCGCGGTTGACCTTGT 311488 33 97.0 33 ...........A..................... CTGTACGGCTGGGGCGGCGCGGAGACCAAGTAC 311422 33 97.0 34 ............................A.... TTGAGTTCCGCCATCACCATGTCGTATACGACAT 311355 33 97.0 35 ...T............................. TGCGACATCGCGTCGAACGCGCCGCCGACGAGCTC 311287 33 100.0 33 ................................. AGGCGTGCAAGGTAGCCAACATTGATTGGGCTG 311221 33 100.0 33 ................................. TGCAAGGGCTGCGCTTTGAAGTACACCATTCGT 311155 33 100.0 33 ................................. TTCTCGTCGGCACCGTCTATCCACTCGCGCTTG 311089 33 100.0 33 ................................. ACGGACCAGAACAGCACGGCGCGGTCATACGTG 311023 33 100.0 34 ................................. ACTTCGAGCGCGTTGATATGGCCAAGGCCGCCAA 310956 33 100.0 36 ................................. TTCCGTCAAGGATACCTACCAGAACGGCGCTATCTG 310887 33 100.0 35 ................................. GGTAATGCCATTGATAAGCGCGGTTAGCAGCTGAA 310819 33 97.0 34 A................................ CAGAACAACGCCATCTGGATTATGTCCCCCGCTA 310752 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 48 33 99.7 34 GTCGCCCCTCGCATGAGGGGCGTGGATTGAAAC # Left flank : ATATTGAAGGCTACCCGCCCTTTATGTGGAAGTAGGACTCCATGCTGGTGCTGGTTACCTATGACGTAAACACCGAAACTCCAGAAGGCAAGCGGAGATTGAGACTTGTGGCTCGAGCTTGTGTTCGAAAAGGCAGGCGCGTTCAAAGCTCGGTTTTTGAGTGTCTGCTGAATAGCGCGGAGTTTATTTCCCTAAAGCACGAGCTTTCAGGAATTGTTGACCAAAAGCATGATAGTCTGCGCTTCTACAATTTGGGTAACGAGTACCGGAGTAAGATTGAGACGATAGGCAAAGACAGGGGTTATGACCCATCCGATACGTTGATGATTTGAGAACGCGTTAGTGCGAACCCTAGGCTGTCATTAATGATACATAGGGTTCGCACTTTTTTGGTTCGATAGCACCGTGACAATTGCATAGGAGAGGATTGCGCAACGATACTTTGTAAAATCCAGTACTATATCGGGTATGTGATGTTGAGAGTTTCGCAACATCTAGCT # Right flank : GAGGGGATGATCGCAGTTAACTTCATCCGAGTCCCTTGTCGAACCCCGCAATTCGCTCGGCTCTCCTTCTTGAAATAACGTACATGCAAATAATCATGGACTACATTTTCTTGGGCAAACTTTGTTCAGAGGCCTGAATCATCGTTTTCGTGTGCATTGTTCAGGGGAGGTACGGCTCAGTGGCTCTCACCAGAGAGGAAAGTAGCTGCTCTATTCGGATTGCCTGAACTGAGGTATTTCTTATTTCTCTTTAGCTGCCCCACTCGCCCTTCAGAGCACAATCGCAAGCATGATGCACAGCTGGGATATCCCATTGACCGCCTGCTCTCGCCAGTTGGCCTTTGCGTCGCGGCCGTCCAAGTGACGGGCAAACCAGCCCATGAGAAACATCCCCGCAAGTCCCGCAATAAGAAACAGCAGAGAGGGCATGGCCGTTACGTATGCCAGGACTGCGGCGGGAGACCACTTGGCGCGGTCGACCACAAGCGAGACGAGTGCTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCGCATGAGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 20460-25751 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSJO01000015.1 Olsenella sp. AM30-3LB AM30-3LB.Scaf15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 20460 28 100.0 33 ............................ CAAGCTACCCTATCGAAGCCATGAAGTCAGGGC 20521 28 100.0 34 ............................ CACGAGAGCGGGCGCATCGTTGAAGATAAACACT 20583 28 100.0 34 ............................ CGACTTGCCCGGACAGAATGGCCGCTATCAGTGG 20645 28 100.0 34 ............................ CTCGTATGGCTTGTAGCTCTCGCCATTCACAAGA 20707 28 100.0 34 ............................ TTGCAATGTGCAAGGCGAACGGCCTTACTTTTGA 20769 28 100.0 34 ............................ CGCCGACCAGCCGAGGGCTGACGACATCCTCTCC 20831 28 100.0 34 ............................ CAGCGATGCACGTCTTTCCGGTTTCTATCTACCG 20893 28 100.0 34 ............................ CAAGCAAGGTAGGTTGTGCGTTAGACTCAACAAA 20955 28 100.0 34 ............................ ACAACGACTTCCTAAACGACAGGGGATACTTCCG 21017 28 100.0 34 ............................ TCTATGACTGCTTGAAATAGATGATACCGGAAGA 21079 28 100.0 34 ............................ TTGAGTTTTGCCGTTTGGCATAACGCTTTTTGTG 21141 28 100.0 34 ............................ CGTGAGCGGCGTCATGGAGGTTCGTTCGGCTGGA 21203 28 100.0 34 ............................ CGGCGGCGCGGAGACCGACGTCCAGCGCGACGCC 21265 28 100.0 34 ............................ CTTTCTGCCGGGGACGGACGAGCACGTGATCATG 21327 28 100.0 34 ............................ TGGGAATCATCGTCAACCCGCAGAACGCAATCAG 21389 28 100.0 34 ............................ CATCTCAAGCTCGCAGAAGCTCCGCATCAACTGG 21451 28 100.0 33 ............................ TGACTACTCGCTCGGCCTGAGCAAGAGGAGCGG 21512 28 100.0 34 ............................ TCAAGACGTTGGCTTTGTGGCGTATGACTCACTG 21574 28 100.0 34 ............................ CCTTCCTGCAATCATTGCGGCAGGCGTGCAGCTG 21636 28 100.0 34 ............................ CTGTGCATCAATCTTGGTGATTGCACCGTTGTAC 21698 28 100.0 34 ............................ CCATGAGATAACCACGGAAACGCGGCCCATTGAA 21760 28 100.0 34 ............................ CGTGTGGCCGCTGCTGTACGTCAACAACGACTTC 21822 28 100.0 34 ............................ CATTAGGTTATAGGCACATATGATTGGCACCTTT 21884 28 100.0 34 ............................ CAATAACAGCATCGACAACCTTATGGTTATACCG 21946 28 100.0 34 ............................ CTTGAGGTTATCCAACATCGTGTAGTTCTGCTTG 22008 28 100.0 35 ............................ CAAGGCGGCGGAAAGCGCAATCAACAACGTGTCCA 22071 28 100.0 33 ............................ AACTCAAGCTTCTCGCTCTTGGTGCTGTCCTCC 22132 28 100.0 34 ............................ CAGGAAGCAGCTTTGTGACTACGTTATCCCAATT 22194 28 100.0 34 ............................ CGCCATCGGCTCCCAGCCGAGGTCGTAGAACGCG 22256 28 100.0 34 ............................ CTCGGGCTGACTAGCGACGAGATGGACGATTACA 22318 28 100.0 34 ............................ CAGGGCGCATACCAAGTGCGTGTGCCTGAGACTC 22380 28 100.0 34 ............................ CTCGGATGACTGGGGCCTGCAGCACCCGTACGCA 22442 28 100.0 34 ............................ CATATCCTCGTGCGGAACTGTGTCTAATACGGGA 22504 28 100.0 34 ............................ CGCATGGGCTAACAAAAACGTAGGCGTGTTCCGT 22566 28 100.0 34 ............................ CGGGATTGGCGTTGTCAATCGTCGCGTTCATGTC 22628 28 100.0 34 ............................ CGCATGGGGCGCACCGTACAAAATGTGCGTTAGC 22690 28 100.0 34 ............................ CAACATCGTCCATGACGGTTCAGGCGAACGACAA 22752 28 100.0 34 ............................ TAGCAGAGAAGCCTAGGAGACTAAGGACTAACCA 22814 28 100.0 33 ............................ CTCTACGTAGGCCTGACCTCCGTCGGGACCCGC 22875 28 100.0 33 ............................ CGTCGAACTCAAGCGTGCAAGTCTCGAGGACGT 22936 28 96.4 33 ..........................T. CAGGCTCGCGTATCGGGTCACCAGGGTGATGGA 22997 28 100.0 34 ............................ CTCGGGCTCGACGCTCTCGACGGGGACCATCCCC 23059 28 100.0 34 ............................ CGTCTCCGCGCGCGGCGCGGAGGGCTAAAGGAGA 23121 28 100.0 34 ............................ CAAGGACTTCCCAATATCCGTCTGGCAACGGTAC 23183 28 100.0 34 ............................ TAGTCCCCAGGCTTCTCATCCGCCGCCACCTCAG 23245 28 100.0 34 ............................ CAGCTTGTCCCCGCTGTCCAGCCCCGAGTCGACC 23307 28 100.0 34 ............................ CGCGGACGGTTCGTGGAGATACCGGAGATGCAGA 23369 28 100.0 34 ............................ CATCTCCCTTAGCGCGTCGCCTGTTTCGTTAAAA 23431 28 100.0 34 ............................ CCCATCCAGGACGCTCCAATACCGCAATGCACGA 23493 28 100.0 34 ............................ CGGCGCACGGCGTCAACGACTGGACGGACAACCC 23555 28 100.0 34 ............................ CTGGGCGCTCACGGACGGCGGGATGTGCGACGGA 23617 28 100.0 34 ............................ CGGAGGAGAGAACACGCTGAACCCGACTGAACCA 23679 28 100.0 34 ............................ CATCGGCATCGCGTGCGGCACGCCGTCCGGCGGG 23741 28 100.0 34 ............................ CCTCCAGGAGGAGGAGTACGAGCGCGGCGACGGC 23803 28 100.0 34 ............................ CGGAAGCATCGTCTTCTCGCACTCGACCAGGCCG 23865 28 100.0 34 ............................ CGCGCCGCAGCTCTTGGCCGGGCCGTCGTTCGCC 23927 28 100.0 34 ............................ CCAGATGGACTTTGTTGTTCAGACAATCTAGGGG 23989 28 100.0 34 ............................ CGAATGTAATTGTCTTACGCATGTTTACCAACTC 24051 28 100.0 34 ............................ CGAAAAACGTTACCGCGACGAGCAACGCGAATCG 24113 28 100.0 34 ............................ TGCACATATCGCCGTATCCGCGCAAAACAGCGTT 24175 28 100.0 34 ............................ CTTTAACGACGAAAACATAACCAACGCAACATTC 24237 28 100.0 34 ............................ TGAGGACCGGATAGGCCGGCCCTCACAGAGATGA 24299 28 100.0 34 ............................ TGACTCGCCGTCCTCCGTGGAAAGGCTCGAATCC 24361 28 100.0 34 ............................ CCTAAAGTCCCCGCCACGCGCGGGCTATGGCATG 24423 28 100.0 34 ............................ CGCATTTACGGTTGCAAGGTCTCGGCTACTACCT 24485 28 100.0 34 ............................ TGGATACGAGCTGAAACCGAATTTGACTCTTTTA 24547 28 100.0 34 ............................ CACGCGGCATGGCATCACGTCCGAGGGAGTCATA 24609 28 100.0 34 ............................ CACATTCACGCACGTCGTATACGACATGGTGATG 24671 28 100.0 34 ............................ CTTCGAGTGCGACGGCGTGAAGTACAGGGGCATG 24733 28 100.0 34 ............................ CATTTTCGAGCAGCGCGTACACTGACGAAGAATT 24795 28 100.0 34 ............................ CATCAACCCCCGCGACCTCATGAGCGCGGACGGA 24857 28 100.0 34 ............................ CGAGCTTTTCGCAGGTCGAGATGTTTTCTACACG 24919 28 100.0 34 ............................ CCGCCAGACCCGCTTGCAGCCCCAGCCCTCGTGA 24981 28 100.0 34 ............................ TATGAGAGCAAATCGTCAGCGTGCCCCTGCGCCC 25043 28 100.0 34 ............................ CAGGCCACTGGCGGCGCGAAGGACTGGGCAGACT 25105 28 100.0 34 ............................ GAAGGCAAAGGAGGCCGAGAGCTATGAGCGTTAA 25167 28 100.0 34 ............................ CTTGGCCTTGATGGTGACGGCGTTCTTGCCGTTG 25229 28 100.0 34 ............................ CCAGAGCCACCCAGTCAGGCGTTATCTGCATTAA 25291 28 100.0 34 ............................ CACCGTTCGAACAGCGTTGGTAACACCGTTCGAA 25353 28 96.4 34 ..........................T. CTGCTGCTTGCCAGCGATAAGCCTGTCCCATGTC 25415 28 100.0 34 ............................ CCATGAATTTACCGCCGATGGGCTGATGCCGCAG 25477 28 100.0 34 ............................ TCACCGTGAACAAAGGGGGCAGCGGAATGTCAGA 25539 28 100.0 34 ............................ TATGAGGCGCACGACTTGTGCCTCGCTAGGGTCC 25601 28 100.0 34 ............................ TCGCTTGCCCGCGTGGGCTAGGGTATGCACGCTG 25663 28 100.0 34 ............................ CGCCATGGACGCGCACGTCGGATTCTTCTAGGGC 25725 27 78.6 0 ........T...C........-CA...T | ========== ====== ====== ====== ============================ =================================== ================== 86 28 99.7 34 GTGCTCCCCGCGTATGCGGGGATGATCC # Left flank : GCCGGGAAATCCTATGCGGATCCAGAAGATGGGGGAGGCGAGTAGCGTGGTAGTGGTTGTGCTGACGGCGTGTCCCGTTGGCCTGCGTGGTGATTTGACGAGGTGGCTGCTTGAGATATCTCCTGGTGTGTTTGTGGGACACATCTCTGCAAGGGTGCGAGATGGGCTTTGGGCACGTGTACTGGCTATGGTGCATAACGGGAGGGCGATCATGGTGTACTCAGCCAAGAACGAGCAGCACCTAGCGTTCAAGACATTTCAGCCTGACTGGCAGCCGGTTGACTGTGAGGGGGTTGAGTTGATGAAGAGACCGCTGGGAACTGATGACGCGACGATGCTCGGAATGCCGCAAACGGGATGGAGCAACGCGAGCAAGTATCGAGCGGCAAGAAGGTTTGGGGGATAGCAGCGCGGCTGAGGTTGCGTGTTGATGCGCGAATGTACCCTGATAACTGAATCAAGAGTTGAGGAATGCGGTATAGTTGCGCAGGTCGTTAAGT # Right flank : TCGGAGATCCGCAATTCCATTTCAGCGAGCGTCTGGGGACGAAAGGGATGCAAGGGCTGCGGCAGCGCAGCTTTGGATGCCCCTCTCTGGCAGGTATTTGCGGCTGGGCTACGGTCTTTCGGGGGTACCCCAAGTACAAAATGGTTCTATGTTTGTTGAACCTCAGGTCAGGGAATTGCTCCTGTGGCTGTGTCACATAAGGAATTGAACGGAAACTGCTGCCAACCGGGAAGCCTGTCTTGGGAAACCGCCCGCTGAAGGCTTCTCGACGGTGTTACCATCAAAATTCAATGACGTTACCCATCGAAACCGTTGTTACGCCAGCGACACGCCCTCCCTTTGGTCTGCGTATACTATCTTGAAAGTAATATATGAAAGTCCATCTAATGCTTTGCGCTTGTGTAGGGGTGTTGTCATGAAGTTGCCCAGATTTGCCCGCCGCCTGTTGCTCTGGGCACTCGATGTTGCCTGTGTGATGGCATCCCTCTACATTTCCCTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTATGCGGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGAATGCGGGGATGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //