Array 1 7723-7870 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFRR01000053.1 Maribrevibacterium harenarium strain HB171799 Contig_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 7723 28 100.0 32 ............................ GGTAAACGTGTCTAGCGCCGTTGCGCCACCGT 7783 28 96.4 32 .......................G.... TCGTAGCGTGCAACGAGGTGTTGGAATGCGTT 7843 28 89.3 0 ........................A.TT | ========== ====== ====== ====== ============================ ================================ ================== 3 28 95.2 32 GTGACCTGCCGCATAGGCAGCTGTTAAA # Left flank : AACCTTACTTCCGAATGATGATCGAGAATGGACTCTTCGAGACAGGTACTGTTGTAGACCTGCCGGTGTCGGATAGTTATGTGAAATTTGTGCGTAATCAATCTATCGACAAAATGACACCTGCTGCCAAAGCAAGACGACTCAGAAGAGCGAAAAAAAGAGCGCTAGCACGAGGAGAAGTGTTCGATCCCATTGCACCCCGGTCGAAGGATGTGGACTTCTTTCACAGTATCCCTATGGAAAGTTCCGAAAGTGAAATGAGCTACCTGTTGAGAGTGCAGCGCTACGAAGTTCAACAAGCGAATACTGTAGCGTCTTTTGAAGTCTGCTCCTATGGCCTCTCGACTAACGAGAGTCACCAAGCGTTGATACCTAGTAGTGTGACGTAGACATTTTCAACAATAAAAACAATTGCTTATACAAGCTCTAAAAAAATTGGTTATGACTAAAATTTTGGTCTAAATTTAAAGCTGCTACGGAGTTAAGGATTTTTCTCGATA # Right flank : TAGGACTGGAAGTAAAAAACCACAACGATGAAAATAAACCTACCGGAAAGGTAGTATCAGCCCACGGATGGGCAATAGCTATTGTAAATTGAAGCATAAAGTGACAAATTTGAGCCATAAGTTGTCAAATTTGCAGTATTAGTTGTCATAACCTACTTTTAAGTTGTTATTAACTTACAGGTGTCGGTTATGTACAATCGCAACCTCCGCAAGCCCAGTCCAAACAAAAATATCTACAAGTTTGTCAGTAGAAAGAATCGCGCGACGGTGATGTGCGAGAGTGCTTTGGAATTTGATGCCTGTTTCTGAGAAGCAGATTCGTCACACACCTGTTGTCCAACCTAAAGATTCTTCATCGTTATGCTAGTTCCACAGTGTCCGACTGAAGTGTTCAACAATTGCATTTACCATGTTTCTTCGTATATACTGACGCCAACCTGATACCTGCTAAGTGGATCACGATGATTGAATTGAAACTTAAGACTAAAGAAATCGCTGCA # Questionable array : NO Score: 3.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACCTGCCGCATAGGCAGCTGTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTACCTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.10,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 12474-12681 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFRR01000055.1 Maribrevibacterium harenarium strain HB171799 Contig_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12474 28 100.0 32 ............................ AGACGGCACTTTGGAGTCGTTTGGCAAGAACA 12534 28 100.0 32 ............................ TCTTGCTCAGTTAGATATGCTCCCTCTTCTTT 12594 28 92.9 32 ....................T...A... ATCTCAACCGATTGGCCCACCGCCCCTTTCCT 12654 28 82.1 0 .......A..C..T...T........T. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 93.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGCTATATCAACCAATCCATCGACGAATACCTAGACTGGTGTGAGACTGGGCAATTCCCTCGCCGTCATACCATCAGCGTATTGCCTATAGACCGCTTGCGGCAAGTTCAGTGTTTTGTCGATCCGGCGATAGTACGTCCGTTAATCAAAGCTATGCGTCACAGCGGTGGATTGTGAATACCTTTCAATCGCAACCGGAGATCCCGAGGGCCGGCTGATTTACCCCCACACCTTTGTCAAAGCGGCTAATCGCTGGCATGTGCGCGCCTTTTGCGAACGTCGCCAACAATTCCGTGACTTTGTACTGAGCCGCTTCCAAAGCGTTGACTACGACGGCAAACCTGCTCAACACGGGCCCGAGGCAGACTCTGCTTGGAACGAAATCGTTGTAATACAAATCGCCCCAGACCCACGGCTGAACCGAACTCAAAAAGCAATAATTGAGCGGGATCTAGGTATGCAAAACGGCCAGCTCGTCATCCAACCTTCAACAACCTAC # Right flank : ATCCTAGCAGTTAGCGTGCACTCGGGACTTAATCACTGTTCAAAAGAGCCCCCCGATTTGTTGTCATTTTGTTGTGGCTAAATATTTCCCGTTACAACTGTCTATACTTTAGATAAAGTGAATTTTTGGTATTTTCTTGAACTCTTCGGGGTTGGAGTGTGGTGCGGTGAAGCATTGGGTTGTTTGGTTGCTCATTTTGCTGGGGGCAGGGCAGGTTGTCGCGCAGGAGAAGGTGCGTTTGCAACTGAAGTGGGAGCATGCCTTTCAGTTCGCTGGATATTATGCCGCTCAAGAGTTGGGATACTACGACGAAGCCGGGTTGCAGGTTGAGATCGTTCCAGCCAAGCCTGGGGTAAACGTGTATGACGAGGTAGAGTCTGGGCGGGCGGAGTTTGGTGTCGGTAATAGTTCGGTGCTGATTCAGCGGGATCAAGGCAAGCCGTTTGTGATTCTTGCGGTGATTTTTCAGCACTCGCCGACGGTGTTTCTCGCTCGTCATG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //