Array 1 4439-3618 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQOI01000148.1 Xanthomonas sp. SHU 199 148, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 4438 31 100.0 33 ............................... TTCGCGTCCCGCTCTTGTGCCTGGTCGAACACG 4374 31 100.0 36 ............................... ATTTCAAAGGAGCGCGACAACCTGCGCCGGCCGTAC 4307 31 100.0 35 ............................... CGGTTCGCCCATGCGATCAAGCATGAGGGGCTGTG 4241 31 100.0 36 ............................... ACCAACGTCGCCACCAACAACACCGCCATCACCGGT 4174 31 100.0 34 ............................... TGCACGGCCGCGCTATGCCGGATCGTTCGGTGTG 4109 31 100.0 34 ............................... CACGCAGAGGGCATGGGCCTGGTCGCGGAATACA 4044 31 100.0 35 ............................... GTCAAGCAGGACGTGGCGGCCGAGAAGGCGTGGCA 3978 31 100.0 35 ............................... AAATTATGTGTCTGGCAGTCACTATGTCGATGCAA 3912 31 100.0 36 ............................... TCTGGAGCGAATGCGCCGACCGTGGACGCGATCGCT 3845 31 100.0 35 ............................... TGCGCCGGCGTGCTGTTCGCCCTGCTCGTGATGGC 3779 31 96.8 36 ...........G................... GACGATAGACGGCACCCGTTCTAAGAGCATTCCCTC 3712 31 87.1 33 ...A..T......T....T............ TCCTTGCCGGCAGGGACTCGCTCACGCATGCCT 3648 31 71.0 0 ...C....A..CAA.....C...G.G...C. | ========== ====== ====== ====== =============================== ==================================== ================== 13 31 96.5 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : CGAAGATTGCGCCGAACTGCACACCGCAGCGCCGGCGATCCTGCACCGCCGCGCGCCGACGCTGGTGGCGGCGTTCGCGCAACGCGGCTGGGCACTGCCGGAACGGATCGATCGCGTCTATTCGCCGCAACGGGCGCTGGACGCACTGGGCTGGCAACCGCGCCATGGTTTCGCGGAAGTGCTGCACCAATACGACACGCACGTGCCCGAGGTGCTGCCGCCCAACGACGGGCGCGCCGTCAGCGACTGAGCGCCAGGCTCTGATCGGCACACCGGGTTCGGATGGCGGAGCAAGGACGTGCGCCGTCGGCGCGAACCGGAAGCGCCCAGGGTTTTACCGGCCGGTTCGCGAATCCCGATAAGCACTTGATCGAAAAAGCGAAATGCCTGGGCAGCGTGAAACCTGGCAAGGCAGCCCCGCCCCCTGCACGTCGCCGCACGCCCGTTTCGCGAAATCGGCACTTTTTCCTTAGTCCCGGCCGGCAGTTATGCTGAGGGCT # Right flank : GTGCCGGGCCCTTGGTTGCGCGGAGGCGCGATTCACGACATCACCGCACCATGGACCTCAGCGCAGCAACACCGAAATGCCGAGGCCGCCCTGCCAGTCCGGGGTCTGCGACGACAGGCCGCGCAGCACCGACAGATCCAGTTGCACGCGGTTGGCGAACAGCCAGGTGACGCCGCTGCCGAGCGCGCGCATCTCATCCTCGCCGCCGCCGATGCCCGCCTCGACGTAGGCGCTCAGCGTATCGCCCGCGTAGAAGGTGTAGCTCGGCGAGACGCTCCAGCCGGAGCCGTCCTCGCTGTCGCTGACATTGCCGTACAGCGCCAGGCTGCGCCCTTCGGGCAGATCCCAGCCGGCGCTCACGCCCAGATCGTAGCGGTGGCCGGCATCGCCGTACGGCGCGCGCCCGACCGGCAGACTGGCGCTGCCGAGCAAGGCCCAGCTGACGCGGTCGCTGGCGCTGGGCAACGCCTGCTTCAAGCCGATGCTGGCGTCGCCGCCAC # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5-429 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQOI01000198.1 Xanthomonas sp. SHU 199 198, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 5 31 100.0 36 ............................... CGCCTCGATGCTGTATCTGGTCACGCGCGCCAAGAA 72 31 100.0 33 ............................... TTGCGCGCCTTCTCGACGCCGCTCGCCCACTTG 136 31 100.0 35 ............................... AATGAGCCGCACAGCGCCGTGCGCGCCTGCATCCT 202 31 100.0 34 ............................... AAGCTCGCGACGCCGAATGCGCAGCTGTCCGAGC 267 31 100.0 35 ............................... GCGAGTGACTTGGCTCGGAACTTGAGCCTATGCGT 333 31 100.0 35 ............................... GACTTGTCGCGCCACAGCATCATGATCTGGTCGGC 399 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 7 31 100.0 35 GTCGCACCCTCACGGGTGCGTGGGTTGAAAC # Left flank : TGTAG # Right flank : ATCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.90,-7.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [5.0-5.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6440-5682 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQOI01000253.1 Xanthomonas sp. SHU 199 253, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 6439 31 96.8 34 .......................G....... CCCACGATGCCGTGGACCGCGCCCATCTACGACG 6374 31 96.8 34 .......................G....... TTCAGCAGCCATGCGGTCATGGCGCGGACCTTGT 6309 31 100.0 35 ............................... TTCATCCGCTCCTTGGGGATGGACCACAGCTTGCC 6243 31 100.0 35 ............................... AGGCGCAAGCGGCCGCTCAAACCCAACACGATCCG 6177 31 100.0 35 ............................... CGTTGGCCGTCATCGCTGGCATCCTCGCCGCCCTC 6111 31 100.0 35 ............................... ATCCAGAGCCGTTCAATAGCGATGCCGCCGCGCGT 6045 31 96.8 34 ..........................T.... AGCTGCGACAGGTGGCCCACGATGCGGGCGCCGA 5980 31 100.0 34 ............................... TACCTGTGGCGCGTGCGTATTCTCGACGCGGATG 5915 31 96.8 38 ............T.................. TACCCGTTCGTCCTGATGGACGTCCCGGCCGGGAACAC 5846 31 100.0 36 ............................... CGGCAGTACGGCTTGAACATGGCGTGGGCGCTGGGC 5779 31 93.5 36 .............T.A............... GCCCAGATGCTCGGCCAGTTGGGGCCAGGCCTGCCG 5712 31 90.3 0 A...................C........T. | ========== ====== ====== ====== =============================== ====================================== ================== 12 31 97.6 35 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : CCCG # Right flank : CTCTCCCTGCCATCTTTGAATCCGCACTCCGAGCCGGAAGCTCGACTCTCCGCTTTGCGGCATCCCCCTGACAAGGTGCCAGACCTCAGACGTACCCGAGCCCGCGCCAGTAGTCCAGCGGACGCCTGGCGGGCACGCCCAACGACGCCGCAATCTCGAGAATGCGCGGCACGTCGCGCCGGTAGACCACAAACAGGTGATTGTCTTCGGTGGTCATATCGTCGATTTCCACCACGTCGTAGCCGTCGCCTTCGTCCGTCCACTCGGCAAGGTGGCGGTCCAGCCAGGTGTAGTACTCGGTCTGCGTCTCCACGTTCTTGGGAAAGGCAGGGAATGCGTCGCCCATCATCTGGCAGAGCTCGTGGTGGACATCGATCATCTTGTCGCCGTTGGCGGAGTAACGCTCCATCGCCGCGGTGATCGCGATTGCATACGCCTGTTCCTCGCACTCGGTCCACTCCAGCTCCGGCAGGAAGGCTTCGATGTCCCGAACGATCTCG # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 822-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQOI01000071.1 Xanthomonas sp. SHU 199 71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 821 31 100.0 34 ............................... CAGAATGGAGCGTATTTATTACCGCACACGCTCG 756 31 100.0 35 ............................... GTGTTGACCGGCCAGTTCGTTCCCGCGACCAGCGG 690 31 100.0 36 ............................... CTTGACGTCGACGAACTGGGCGCTGCCGTCACACAG 623 31 100.0 35 ............................... TCATGCTGCCCCGATAGCGTCTGGTGTGCCTGCCG 557 31 100.0 36 ............................... GCGCTTGTGAGCCACCCACCACAAAATCGCCAGCGC 490 31 100.0 33 ............................... TGATTCCGGGACCGAGATTGAGATTAGTATTAT 426 31 100.0 34 ............................... AATATCAATGAAGACGAGGGCGCAATTCTCGGTA 361 31 100.0 34 ............................... GACCAAAACGGGCGACCTTTTTTCACTTGGTATG 296 31 100.0 36 ............................... GCTTTACGGGAAATTCGCATCCCGCCGTTTGCGCAG 229 31 100.0 34 ............................... CCGTACACGGCCGGCACGGTTTCGCTGCAAGCGA 164 31 100.0 35 ............................... GATGGAACACCTGCGCCGCACCGTGGCGTTGCACC 98 31 100.0 35 ............................... GGCTGTCCCGCGTTGATGTTGGCCGAATCGTTGTA 32 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 13 31 100.0 35 GTCGCACCCTCACGGGTGCGTGGGTTGAAAC # Left flank : TGT # Right flank : CC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.90,-7.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-5.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 18-507 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQOI01000072.1 Xanthomonas sp. SHU 199 72, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 18 31 100.0 36 ............................... AACCCGGTAGGCGACGACACCTATTCCGCATGCCCT 85 31 100.0 34 ............................... GAGTAGGCGATCAGCCGGTCCATCGAGCCGTCGA 150 31 100.0 34 ............................... TCTCAAGCTAAGCCGGACAGGTGCAACCATGTCA 215 31 100.0 34 ............................... GTTTGAAGCCGGGATGCTGGTAACGCCTGAAGGC 280 31 100.0 35 ............................... CAGAAGTCCGCATCAAGATGCGCGATGGCGGTGTC 346 31 100.0 35 ............................... ATCATGCTCGACATCCCGAGCTCGAACTCGAAGCC 412 31 100.0 34 ............................... TTTATAAACAGCCCAACGTTTATCTTTCAATGTA 477 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 8 31 100.0 35 GTCGCACCCTCACGGGTGCGTGGGTTGAAAC # Left flank : CGCCACCGCGGCGCTGTG # Right flank : C # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.90,-7.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [5.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //