Array 1 299735-298447 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYTG010000016.1 Pectobacterium quasiaquaticum strain A113-S21-F16 P.quasiaquaticum_A113-S21-F16_contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 299734 28 100.0 32 ............................ GCGACCGCTGTCGCTGGGCTGACGTATTCGTA 299674 28 100.0 32 ............................ TTGCTTGACAGGGCAGAGGCGTCGACCAAAAA 299614 28 100.0 32 ............................ CCGAAGCCGTAGTTTTTGTCCATCCACTTCTC 299554 28 100.0 32 ............................ TCGTTCCAGACCACCAAAGACGGCACTATAGA 299494 28 100.0 32 ............................ AAGGCCCAGCTCGCAGTTATGCGCCAGTAAAT 299434 28 100.0 32 ............................ TCCGCGGCGCGCGACACAGCCGAACTGCCAGC 299374 28 100.0 32 ............................ AAGAGTCATATAAGCCAGCACATCATGCATCG 299314 28 100.0 32 ............................ GTCTCGCGAATGATTATGCGCAACTGTTCTTC 299254 28 100.0 32 ............................ ATGATAATGTCTGCCTCGAACATGCTGACCTC 299194 28 100.0 32 ............................ GTCCATTGCAACAGCCGACGACAAGCGTCCGG 299134 28 100.0 32 ............................ ATCACGTCGGCCATCTTGAACAGCAGGTCCAC 299074 28 100.0 32 ............................ TTGACTAAAGTTTAACCGGGGCCACAATGGAC 299014 28 100.0 32 ............................ GAGAACCTGAGCGTCGGCGGTTACCTCGACCT 298954 28 100.0 32 ............................ TCAACCTGAATGTTGGGTATCGCAGTAATAGA 298894 28 100.0 32 ............................ AAGACAGGGCCGCGACACATATTTCGAGCCTG 298834 28 100.0 32 ............................ CACCCGCCATGTGCGCAAAGTCACCCGCACGC 298774 28 100.0 32 ............................ GAAAGACGAGCCGAAAGGCCCGGACGTAGCGA 298714 28 100.0 32 ............................ AGCCAGGGTTTTAATCATGGGTGACTTATATT 298654 28 100.0 32 ............................ GGTAGAACTCCTGTCAAAGGCGCGACCCGCTG 298594 28 100.0 32 ............................ GATGTTATATGCCAGACTTACCATCGCGTCGA 298534 28 100.0 32 ............................ CACAGAATTACGGGGGTTAACCGTGGGTAAAA 298474 28 85.7 0 ....................T.C..C.C | ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.3 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAGGCGCTCTCTACGCTAGATCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGTTGCGCCGACGCTCGGTGAACAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGAATTCCCGATGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGTCCGCTACAAGACGCCCCTGTCGCCGGACGCTTTTCCTCCTACGGCCTAAGCGCAGAAGCCACCGTCCCTTGGTTCTGACCCTTTTTTGGCGACCATCTGCAACCCATTGATTTTTAAATGCAGTTGGTCGCCCTAATAAAAAAGGGTTTCTCGCGATAAAATGAATATTCTCTTTAACAATCTGGTAGTTAGCATAAAAACTTAAC # Right flank : TTATCGAGATGCGTCGCTGGCGCGACGCATTTTAGAGGCTATTCCCCGTTGAGGGTAACCACCAGCGAGCGGCCGCCGCCGTGGTTGCGGTGTTCACACAGGTAAATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTTAGACTGTTGCCCAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCGTTGCCTTCATAGGTATGGCGGTAATACGGCTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACTGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGTGCCCACATCACCGTACTCCCACTATCAGGCTTCGCGCGCCAGAATCGGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 308688-309616 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYTG010000016.1 Pectobacterium quasiaquaticum strain A113-S21-F16 P.quasiaquaticum_A113-S21-F16_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 308688 28 100.0 32 ............................ ATAATAATTATTGTTGCTGACATCAACCCAGT 308748 28 100.0 32 ............................ TAAAGGATTAACTATTGAAGACCACAACAGGG 308808 28 100.0 32 ............................ GCGAGGGGCTTATTTTATGAAAGCCAAATAAG 308868 28 100.0 33 ............................ CTGACGGCTGCAAACATTGCACGCAGCAGTTGC 308929 28 100.0 32 ............................ TGATTGAGTTACGGTTAGCATTCGCTCTGAAT 308989 28 100.0 32 ............................ AAACACAAACAGCGGAGCAACACAAAATGACT 309049 28 100.0 32 ............................ GTTCATTGAATTGTACATTCTGTTAACATTTT 309109 28 92.9 32 ...........G.T.............. TTAAGGTGGCCTTGTTAATGGATTGTTAATCA 309169 28 92.9 32 ...........G.T.............. TATTCGTCGTGGGTACTTCCGACCTTACGGCA 309229 28 92.9 32 ...........G.T.............. ATTCTGCAAACGGCCCTTGTTATCTTTGCCAT 309289 28 92.9 32 ...........T.T.............. ACTTGCTGGATGAGCTGTCGATCCAGGCGTTA 309349 28 92.9 32 ...........T.T.............. TCTCCCTGTGTACCCGATGATGCGCTGATTGA 309409 28 92.9 32 ...........T.T.............. ACGGCACAGTTACTGACTGGCTCTACAGTGAC 309469 28 100.0 32 ............................ AGCATTGGTTGAATCTGCTGACCTACGGCTGA 309529 28 100.0 32 ............................ TGAACCAGTTAGAGCAGGAGAACGGCCCGCTA 309589 28 92.9 0 ...........T.T.............. | ========== ====== ====== ====== ============================ ================================= ================== 16 28 96.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTGACGGAGGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGCCCACCGTTAACGAGAATGCGACAATGCTGGAGATAATAAACATTGGCACGTTTAGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGGAATGAATCGCAGGCTAACTATTTGATAAAGAAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAAATATTCAGAAAAAATGGTGGCTGCAAAAAATATGACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTACTAATAAAACAAACCGTTAGAGTGATCGGGCTACA # Right flank : AAGCGTGAATCATTACCGCGTCAATAGATCCTAACCCGCATTTATTTCTCGCCAGTTCAGCCAGATTCGCATATCAAATTCCAACTGGTGATAATCAGGATCCATATGGCAGCAGAGTTGGTAGAAGGCCTTGTTGTGATCTTTTTCTTTGAGGTGAGCGAGTTCGTGTATCACGATCATCCGCAGGAAATCTTCTGGCCCGTCACGGAACAGCATCGCTATTCTGATTTCGTTATTGGACTTTAATTTTCCGCCCTGCACACGCGCCACAAACGTATTGGTTCCTAGTGTCCCTTTTATCGGGTTTTGTTTATTGTCGTAAAGCACCTTTGATATCGCCGGGGCGTTTTTCAAATAGCGCTGTTTCAGCTCGGCGACAAACTGATAGAGCGACTTATCACTCTGGATCGGATGACGGTCAGGGTATTTTTTTTCCAGCCAGAGGCCGAGTTTGCCTTGATCGAGGAGCGTTTGTACTTGGGCAACAATCGCTGGGGGAT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 313139-312931 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYTG010000016.1 Pectobacterium quasiaquaticum strain A113-S21-F16 P.quasiaquaticum_A113-S21-F16_contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 313138 28 100.0 32 ............................ CACGGTTTAGCGCTAGCAGTTGGGTCTTCAAC 313078 28 100.0 32 ............................ TGCTGGTACGTGATAGAGCCTTCGTCATAAAT 313018 28 100.0 32 ............................ CTCCATCGAACGGCGAGAATAAATTAATCTCA 312958 28 96.4 0 ......................A..... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 99.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TCCTGACGTTCTGTCATAAAGTCGGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATAAATACATAAATTCAGCCAGAGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGGTTGTATATCCATAGCATATGCAGATACCTGACATAGGCCTATTGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTACGCATCGTCGTAACTTATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAAGGTTTTTTCGGGGAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAAC # Right flank : ATTAAACGCGCCGAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAGCAGGCACAGCTGATTCTCGGCTATCATGCCCGCCTGTCGCCGAACGCCGTCGGGCTGGAATGTCTGGGGTTAATTGAGGTGCGACTCATCAATCACACCAGCGAATACGTTGAGCGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTACCTGTTAAAAGTCGCCGTGGCCGATCTGCCCGGACTCAGCACGCTGATTAGCCAAATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //