Array 1 89976-89643 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN173711.1 Lactiplantibacillus paraplantarum strain L-ZS9 C483, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 89975 28 100.0 33 ............................ CTTGCTGGCTGAGGTTAAGAATCGTGTCGACAG 89914 28 100.0 33 ............................ TGACGCCATACGCATCAGCCAGCGCCTTGTCCG 89853 28 100.0 33 ............................ TACGAAGAAATAGAGACACAGTCTTAAACTCAC 89792 28 100.0 33 ............................ TGTTGAAAGTCCCAGTCCCGTCGGTTGACTTTA 89731 28 100.0 33 ............................ CGTGCACGAGAACCCGGATCTATTGGAGGCAGA 89670 28 92.9 0 ...........A..............T. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 98.8 33 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : TTACTGAAAATCGGCGCCCAATTGACCTTAAAAAACTAACTAAAAAACGCGGGACGTTTGCATGGGAATGGATGTACTCAAAGTCCTACTACCACACGGCCGACATGATTAGTCAGCACTACATCCTAGACACAATCGCGAATTTGCTTGATCACGACTTACTTAAAAGTACGCTATCGCAGACACTACAGCCGATTAACGCGCTTAACTTGCGGCAGGCCCATCAACTTATCGAGCAGCATCATATGATTGGTAAGGTAGTTATTGAAGGATGGGAATGATTTGACGTCATATTGCGGCTCAGGTAATCTACTTTAAATAGCCAAATACGTTGCTGTTTTCTGCTTCGTGGTGCTTACACATGATGTTGCACTCCAATGGAGAAATTATTGATATTCTTGGCATCATACCTTATAGTCAAAGTAGCGATGAAGTTGCAAGTTAACTAAAATTCGCTGTTTGGTTATTTTGGATTGTTGATTTAATGGGATTTGTTTAGT # Right flank : TAAGTTGTTAAACTTCCCACTCTGAAGCTACGTCGTCCCTAAAATAATTGCGGCCTTTCTCATTCATCGACCAGCATAAAAACTGAAAGCAATAATCCATCGAACCGCTACCTACCACCAATAAGACAAACCTATGATATCAAATTCGCTTACTCCAGCACCGATTGTCGTTAAAACTGCCAAACTTTCTTTTTAAGTTTCCAAAATATTAGTGCTATGATAATAGCATAATTTTGACTAAATTTTTTTAATCGGAAAGGACTTTGAAATTGGCATTTAAAACACCGTTGGCTGATCAAATGCGGCCACAATCACTGGATCAGATGGTCGGACAACAGGACTTGTTGAAGTCGGGCCAGCCACTGCGCCAGATTATTGATCAACACGTTAATATCCCCCTCATTCTGTGGGGGCCGCCGGGAACCGGCAAAACCAGTTTGGCACAAATCATTGCCAGCCAAGACGACTATCCCTTCGTAGCTTTTAATGCTTCGACTGAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6197-6958 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN173719.1 Lactiplantibacillus paraplantarum strain L-ZS9 scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6197 36 100.0 30 .................................... TCATGTCTTCACGAGTGCTCTTAAAGTTAT 6263 36 100.0 30 .................................... AATGGCATGCCAAATTGAGTTAACAACTCA 6329 36 100.0 30 .................................... ATGAAGGCAGATTTTGATTTTGGTCGCCAG 6395 36 100.0 30 .................................... TTTACAAAGTTGCTTGATAGGGTGCTTCAC 6461 36 100.0 30 .................................... CTTTTGCCATTACATACCACCACACCTCCG 6527 36 100.0 30 .................................... TATGCAACTCAATAGGAAAATGACCGACCT 6593 36 97.2 30 .............G...................... TTTTTGAGCTGAAGCTAACAATTAATATTA 6659 36 100.0 30 .................................... ATGAGTTCTTAGCATTGCACGGCGCCTACA 6725 36 100.0 30 .................................... ACGTTCTAATGGGTACCAAGTCGTTTATGA 6791 36 97.2 30 ...............C.................... AAGGAAGGTGCCAGATAGTGTCGAGAACGT 6857 36 97.2 30 ............T....................... ATTTTTTCCTGCACTCATCTATGAGCCAGG 6923 36 91.7 0 .C.............C...........A........ | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 98.6 30 GTTTCAGAAGGACATTAAATCAATAAGGTCAAGACC # Left flank : TCGTACTATTGAGGTCAATCAGTATTTGACCAAGTTAGAACGGCTGATTAGCGAGTCACTAACAGACGAAGACCGTAATCAGATTCATGATTGCTTAAGTAAGCTGTATTCAGCAGTGGAGCAACAGCTTTTCCTGACAGATTTGCCACTAGAAGTAACCTATGACTTTGACATGAAGCACTTGCTAAAGTTTGCCAAGATTCATTTTGACGAGAAGTGGCAGACTAATCCGTATGATATAATTGAGTCAATATTAAAGGTTCATCAGGAGTGCGATATTGAATCTTGTGTGGTGCTGACCAATGTTACACATTATTTGACTGCATCACAAATGCATGAGCTTGAAGACAGTGTGGTAGCGACTGGACAATCGCTACTGTTATTGGAGTTCTGCAAGATGGATCAACGCGATTACTATGATGTTGGGTCGTTCAATTTTATTGATGAAGACTTTGTTGATTGGTACTAATGGAATGTTAAATTTCGATTAGAGATTAACG # Right flank : CAGTAGCATGGTTAATTGCTTTATAAGTACTGTTTCAGAAGGACATTGATTAATATGATTATGCCTTAGCTATCGGTTGATAACTATGCTGTGGGCTTTAGAGAGAATGGTGAGCAGCAACTAGTTGCGAATAATATTTACAGGATAATTACTTTCACTTCGCAATATCCAATCCGTTGCCAATCCCCAAACTGGCGCATGACCTCACTATGAGTGACACAGGCGATACACTGGTAATGCTGATACTTATCAAAGACCGCTTGGACACGGTGGCGAATATCAGCACTAGTTTCGTAGTCCCAGACTTGAGAATCACTAGCTTGACCATGGTTGGCAGTATATTCATCGTAGGCGGCCATTGCTTGACGACCGCTTTTTATTTGCCAGCCTGATTTATCAGGATACCATTCATGAAGGCCTAACTCGACTTGTAATGGTCGGTTATGCCGTCGGATGATTTCAGTTGCGGTTTGCAGCGCTCGAGTATAGGGCGAGGCTAA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGACATTAAATCAATAAGGTCAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 480-210 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN173721.1 Lactiplantibacillus paraplantarum strain L-ZS9 scaffold10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 479 28 100.0 33 ............................ TGTGATATCAAGGAACGCGCTAACGGCATCAGC 418 28 100.0 33 ............................ CACGTTGCCAGACCCACGGCTTATTATCGTTGA 357 28 100.0 33 ............................ TTACAATGTTTCATAAGTGTCATGGCTAATCGC 296 28 100.0 33 ............................ CTTCCTCTACCTCAACTCGCGGATTTCGTTTGT 235 26 82.1 0 ............T.C.....C.--.... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 96.4 33 CTATTCCCCGTGCATACGGGGGTGATCC # Left flank : TAATAATTGCTGCTGGTACAAAAACAACACCACGAGCATCACTGACTCGAATCGCACTATCTTGACGATCAAGTTTGGCATGTTCCAAGTATAAGAAAGTTAATCGGTCATGAATTCGACTCAACTCTGACAATTCTGGCTTTTTTGCTCCAGATTTTTTCATTAGTACTGCACCTCCAAAGTGACTAGCATCAAGTTCACACAGTTGATTCTCAAAAAGTAATTTTCCATGGATAAAGAACATAATGAACTTTTAAATATAGGATAGGGATTGGCCAAACAAAAAAACGCTTACATTGCACTGTAACTCATATATTCAAAAAAACTTCTGAATATCTATATTTCATCAAAATCATTGCAGCTTCATAATTATAATAGCATAATTCATTTGCCAGAAAAAACACATATATGTATACTTATTGTCAGATATCAGATACAAAGTTAACTGAAAATTGCTCATCGGTGCTTCCGTATTGTTGATATGTCAGCATTTCTATAGT # Right flank : CATATTTTAAATAAAGAATCTGGTCAGCCTTTAATCGCACTGTTGGACGCAAAACTGGCTGAGCCTAGCGAACCATTTGCAACATATATTGAAGACGTTACCAGCTATAAAATTTATATTCCCGGTTTGTAAAATTAAGTTAGAAATTTAAAAAGCCATTTGTGATAGACTTTTGAGTGTCAAAATCAAAAGAAAGGCTGATCACAAATG # Questionable array : NO Score: 2.88 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGCATACGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.90,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 3267-2751 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN173721.1 Lactiplantibacillus paraplantarum strain L-ZS9 scaffold10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3266 29 96.6 32 ............................C GGTACCCCGTTTTCACGAACGGCAATGTAGCG 3205 29 100.0 32 ............................. ATTGTTCCGCGTTCCGGGTTCGGCCGTCTTAA 3144 29 96.6 32 ............................C ATCATCACAACTCTGACACTTTTTCCATGCAA 3083 29 100.0 32 ............................. AGAATTTCCACAAGAAAGGAATCTGCTTCTTG 3022 29 96.6 32 ............................C AAATGATCGATCGTAACATTGCGGGAAAAGTT 2961 29 100.0 32 ............................. TATAGCACAGTAAAAACAAGGGGTGGCAGTGA 2900 29 100.0 32 ............................. TGCATGCAGCGGAACAGATCTAAGTCGCTCGT 2839 28 93.1 32 ...............-............C CAGTCCACGCAAGCGGTTAGCGATTTTTTGCT 2779 29 82.8 0 ...........T..C........A.C..A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.2 32 CTATTCCCCGTGTATACGGGGGTGATCCT # Left flank : ATAATCATTGTACCGTGTAATCTCTGTTCACTGATCTTACTTTCATTGGATCTTTATTTTAAGTTTCTAGCTGTCTGTAAAATAATTTCAAAAATTAACTATATCTTATATTAACATTTAAATTTTAAAGATTCAGCTTCATACTTAATAAAATATGGCTATCTTTATCTAAACTATTTATGTGAAGAAAAATCGTTGAAACGGTAAATAATTTTGCATTATAGATGAGATATGTATTTTACAAGCCTAGCCCTTGTTGTCCACCACATAGTTATTGTTATTCATAAATTTATCGCTTAACATTTTTGTATCACACAATTTGCATGACCTAATAATTTCAATCAGTACTCACAGCAAGTGCAAATTCAATGCTATGAAGACCGCTTTGCTACAATGCCTCCTTGCTTGTATGGTTAATATTAATGGCAACAATCAAGCAAGTTGACTTAAATCTCTCAAGTACTGATTTAATATTGCTGCTATAATAGGCTTTGTTTAGT # Right flank : AACAAAGCCATATAAACAACAAATCACTTTCAAACAAATACAACTCCACAAATATAAAAGTGAATGCTTCACACGTCAGCACGCTACAAAGTCTCACTAAATATTTAAAGAACCGTCTTTAATCAACTTGTGGGCTAACGCCAGTGTTGCCTTAGCATCTGAAAGCGCGTTATGTGGCCTTAAGTTCACGATTTGATAAGCCGCTAACACCGTTGACAAGCGATAATTATCTAAGAAAATATTTGTGCGTTTCACAATGGGCATGAGATCTGTTGTCTGATTGGTCAATCCTTCTATGTCTTTTTCTATCAATGCTTGCTTCAAGAACATTTCGTCAAAATGAAAATTATAGCCTACGATTACACTGTTACCGATAAAGACCTTCATTTCACTTAACGCCATAACTATCGAAACACCTTCCTCATTAAGCATGTCACGTGTAATCCCAGTAAGTTCAACAATTTTTTGGGGCAACAATCGATCAATTTTTATTAGTCGGC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATACGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.90,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //