Array 1 113908-113680 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUQR01000013.1 Bacillus sp. dmp10 NODE_13_length_162537_cov_40.318675, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 113907 32 87.5 33 ......T..CT.G................... ACTGCCATTTATGCCATCTAGCCCACGAAAATA 113842 32 100.0 34 ................................ TATGCTAACCGTCTTTCTTACTCCATATGGAAAA 113776 32 93.8 33 ........A....T.................. TGGTTATTTTCCATTCGTGTTTTATGCTCCTCT 113711 32 93.8 0 .............T......A........... | ========== ====== ====== ====== ================================ ================================== ================== 4 32 93.8 34 GTCGCACCTTATACAGGTGCGTGGATTGAAAT # Left flank : TGATCCAATTGACATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGAGCCTGGGAAAGATAAAGGTTCAGATACGATGGGGATAAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATTAATACGCAATTAGCAGAAAAGACAGGCTTTACTAACGAAGATGCGGAGAAGATTAAAAATGCACTGGTTACACTGTTTGAAAATGATGCATCAGCAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGGATCATAATTCAAAAATTGGTCAATACTCCTCTGCAAAAGTACATCGTTTATTAGAGGATAAACGGAATATTGACGAGCCAAAAACAATCGGTGATTATACTGTATTGGTACATGAATTAGATGATTTAAAAGTTGAGATTATTAATGAAATGTAATAAAAAGCGTCAGAATAGTTGAAAGAAAGTATCCTTATAAAGATATACTCTATCAATTTATTAAAGGAAA # Right flank : TTTAAGTCGTATACAACAGTAACTCACAAAGAATATCGTACCTCTTGTAGGTGTGTGGAGTAAGGCTAATAAGATAATTGATAGTAATTTAGTGTCTCTGTTGGAGTAAGAGAACCTGTTTCAATTCATACAGCAACAAGTGTTGATCCGATTGATATTACTTGTATGCAGATTAAGAAAAGTGTAAATTCTGAGCTTGGGAAGAATAAAGGTTCAGATACAACGGGGTTGAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTTATGGAAGTATTAATACACAATTAGCAGAAAAGACAGGTTTTACTAACGAAGATGCGGAGATGATGAAAAATGCACTGGTTCCATCGATTGAAAATGGTGCATCAGCAGCGCGCCCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGGATCATAATTCAAAAATTGGTCAATACTCCTCTGCAAAAGTACATCGTTTATTAGAGGATAAACGGAATATTGACGAGCCAA # Questionable array : NO Score: 6.74 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATACAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 115982-115291 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUQR01000013.1 Bacillus sp. dmp10 NODE_13_length_162537_cov_40.318675, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 115981 32 100.0 35 ................................ CATAAGACTAGTGAGAAAGAAGTGCAAACAGGAGG 115914 32 100.0 35 ................................ AGTATAACATGCTGAGATTGAATCCAAACGTACTA 115847 32 100.0 34 ................................ TAGACCAGCTAAGTTTAGTTATATCGATTGGATT 115781 32 100.0 34 ................................ TAAGAAAGGGGTGAAATGATGGCAGGAAAAATTA 115715 32 100.0 34 ................................ GAAATTCCACCAGGATACGAACTCCAAGTAAGGC 115649 32 100.0 33 ................................ TTGGATATGTTCGGCGATGAATCACTGCATATG 115584 32 100.0 34 ................................ GGTTTAGCTCGTGCAGCATTGGCAGCACGTAGTT 115518 32 100.0 34 ................................ CGAATTGGACTATTCGATGGAAAACAATACTATA 115452 32 100.0 33 ................................ ACCCCCTTGTGCAACGCAAAAAAGTCGCTATAA 115387 32 93.8 33 .........C.........T............ TTACAAGCGGTACTTATGACCCTCAGGGTTTAT 115322 32 68.8 0 ...C.....CT.G..A...T.....G.A.G.C | ========== ====== ====== ====== ================================ =================================== ================== 11 32 96.6 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : AGATGAATATCCACCATTTTTATGGAAGTAGGTGTAACAGTTGCTAGTATTAATAACATATGATGTAAGCACAGCTAACAGTTTCGGACAAAAAAGACTTCGAAAAGTTTCGAAAATATGTCAAAATTATGGTCAACGAGTCCAAAATTCAGTGTTTGAATGTGTTGTGGATGCAACTCAATTTGCTACTTTAAAGATGGAATTAGTTAAAATTATTAACGAAGATGAGGATAGTCTCAGATTTTATCAGTTAGGTAATAACTATAAAAATAAGGTTGAACATATTGGTATAAAGGAATCAATTGATTTAGAAAGTCCTTTAATTTTTTAGGTGCGAACATATAGCACACATGAAATTCCTCGTACATTCGCACCTGAATTTTCATAATTTATGAGTGAAGTTTAATATTTTTTATATAAATTCTCTTATTAAATAAAGAAATATGTATATTTTTGAACAGAATTAATGTATTTTTGTATGATTTTAAACAAAAATCGCT # Right flank : TGATAAGATAATTGATAGTAATTTAGTTTCTCTGTTGGAATAAGAGGACCTGCTTCAATTCATACGGCAACGAGTGTTGATCCGATTGACATTACTGGTATGCATATTACGAAAAGTGTAAATTCTGAGCCTGGCAAGGATAAGGGTTCAGATACGATGGGGATGAAGCATGGTGTTGATCTTGGAGCTTATATTTTTTATGGAAGTATTCATATGTAATGAGCAAGGAGACAGATTTCACCAAAGGTGATGCAGAAAAGATTAAAAATGAACTGGTTACATTGTTTGGAAATGATGGGGCAGCAGTGTGCCCTGAAGGAAGTATAGAAGTACATAAAGCTTGTTGGTGGGATCATAATTCAAAAATTGGCCAATACTCTTCCGCAAAAGTACACCGTTTACTGGATATTAAGCGGAACATTGACGAACCAAAAACAACTGATGACTATAACGTTTTGGTAAATGAATTAGATAGTTTAAAAGTTACGATTATGGATGGC # Questionable array : NO Score: 9.09 # Score Detail : 1:0, 2:3, 3:3, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 125391-124372 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUQR01000013.1 Bacillus sp. dmp10 NODE_13_length_162537_cov_40.318675, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================================================================================== ================== 125390 32 100.0 33 ................................ CACTTCTGCTGCTGATATTGATAATGCTTTGAA 125325 32 100.0 34 ................................ GGTTATGTAAATGGTGGTGGATCAGTAGCACATC 125259 32 100.0 34 ................................ AAAATTAGTATTGTTAATTTAATAGCCAATGGAT 125193 32 100.0 34 ................................ ATGTTAGCGAGTCCTGAGAGAGTGGACGGCGATG 125127 32 100.0 35 ................................ GTCTTTGACCAAAACTTGCCGAATGACCGAAAGAA 125060 32 100.0 34 ................................ AATTAAGTGAATTAATGCTTGTCAATGATTGTAG 124994 32 100.0 35 ................................ CGTCATTCAAGGCTTGATAATCTTCGTGAGCAAGG 124927 32 100.0 34 ................................ ACGTTAGAAGCTAAAGCTAAGTTTTTAGGTACTG 124861 32 100.0 34 ................................ ACCATACGAGACTCCTGATGTTACGGGGGCATTA 124795 32 96.9 99 ...................T............ CAAGGGAACATTGAATTGGTGTTTAACCAATCCGGTCGCATCCCTTATGATGCGGGGATTAAAATGCGGTAAGGAGTGGCGCACTGGCAAGGACACACA 124664 32 96.9 34 .........C...................... TTCGGATATGAAGAAAAAGGCGTAAACTAAAACA 124598 32 90.6 33 .........CT.G................... ATATAGTATCGGTGGTCCTAAAGGGTTATTACA 124533 31 87.5 33 .........C-.........A..........A CGTGAGGTAAACACAGGTTACGAAGCTAACGAA G [124520] 124468 32 90.6 33 .........C..G.......A........... TGTAGATAAAGATAAGAATGATTCACCGCCTGT 124403 32 90.6 0 ..........T.G..............A.... | ========== ====== ====== ====== ================================ =================================================================================================== ================== 15 32 96.9 39 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : AAGAATGTGGAGAAGAATATGTATGTACTAATGACGATATATGTGAAATAGGAACATGTGTAAATTGTGGAGCGAAGCATGAAATTTCTACGTGTGAAAGATGTGAAGTAACATATAACCAAAATATTGATGGTGGAGAATATATCTGTCAAAATTGCTTGGAGCATTATTTAGAGGAATAGGGAATTTGATGTTTAGCTCTAAAAATCTCTCTACAAATTAATATATGTATATAATTTACAAAAAGTGTTGTATTGTATAAAAATACCAATATTTTATAATTATGAATCGAATAGTAATAGATTAACCAAAAGTTATTTTAATTTTTTAGGTGCGAATGTATAGTAAACATGAAATTCCTAGTACATTCGCACCTGGAATTCTCATAATTTATGATTGGAATTTATGATTTTTATACAAATTACTTTATTAAATAAAAATATTTGTATGCTTTTGAATAGAATTAACGTATTTGTGGTTGATTTTGAACACAAATCGGT # Right flank : ATCACAAGATTGAGGAAGAAGGGGTTTTTTAGGTAATGCTTTAACTTCAAAACAGTCTTCAGCTCATTAGATACTCAACCCGGAGCATCTATCCCTGCAGTATCTAACACACATGTTAAAAATATAAATTGGAGGGAGATTGAATGACCTACATTGCCCATATCCGCGAGAGTGACAGTCAAGTACAAACAGTTGAAGAGCATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTGGCTGGTTTAGCCGGTATGCTCCATGATATGGGGAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAGGGGGAGTGTTGACCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATTATTCCTTACAAAGGGATAATATCCGAGATAGTGGGAAACGCTATTATTTCTCACCACGGATACCTTCAA # Questionable array : NO Score: 8.72 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:-0.38, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //