Array 1 7559-7171 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERKC010000026.1 Serratia rubidaea strain JGM70 scaffold26_size32721, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 7558 28 100.0 32 ............................ GATGCCGAACGTACCCAAAAACGGGAATGTTA 7498 28 100.0 32 ............................ TCGGAACAAACGCCAATACAGCTCAGGGCCGG 7438 28 100.0 32 ............................ GTCGCCGTGGCGCGGCTCAGAGCCGGCTTTCC 7378 28 100.0 32 ............................ TACCGAAGCCGAGAAGCTTTTACAATCAGAAA 7318 28 100.0 32 ............................ TGGAAGTTGGTCTTGTGTAGCCGGATACCATC 7258 28 100.0 32 ............................ CCAGATATCTGAGAGCTGTGCTGTAGATGAAA 7198 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATTCGGGAAGGTTTGCTGCACTTCGGTGCGCACCACTTTATCTGCGCCACCGCACACTGCTGCGGCATCAATGGTTTTCTTCTGGCCAATGCCGGAGACAAAGAAGTGGTGAGTGGTGGTCTGCTTAGGCGCGGCGACCGTTTGGTTTTTCATCGTGAACGTCTGCTGTGCACAGCCGGTAACCGTCATGGCAAGGACTACGGCGGCGAGTAATTTTTTCATTATTTTCAATTCCTTTTTAATCAATCAATATAAAGCGCGGGGATAATGCCACGCTTACAGAAATTTACAAGTGTGGGTGACAATAAATAGCGTGCTAAGCGAGGAGGCTTGCGCGGCAGAGAGCGGCAACGTAGGGCTGCGCCAACAACCCTTTTTTTAGCACTATGCGTAACCTATTGATATCTAATGGGCGTTTGAGCAGGCGTAAAAAAAGGGTATCAGCGGCTGAAAAGGGGAAAAAGCTTTAATTATTAAGCCGCTGGCCTTAAACTCTAACA # Right flank : GCTCCTCAGTTGGATGTTTTCCTGTTGGTGATTGTTCTGCTGGGCTTTCTTAATTTATTTCGGCTGATGGGGCGGTGTATCGTTTGGTTTAACGAAAACGATAAACGGTCAGATTAAATAAATCGCGCCTTTGACCATTCCGGCAAGCCGCATAACCAACGGGAACCCTGGGGTTCCCGTCGTCGATTAACCATCATGCCGCAAAAGCGTCAGCGCCCGCTCACGGCGGCCGGGCTGTCCGCCGTGGCCAGCGTATCCTCCAATACTTCAAACAGGCGGTCGATCTCCTCGCGGGTGTTGTAATGCATCATGCCGATGCGCAGCACGCCGCCGTGCTCCTGTAGGTTGAGCTGCCGTATCAGACCCTGCGCGTAAAAATGTCCGCTGCCGGCGCAGATATTGTGCTGACCTAACAGCATGGCAATCTGCTCCGGCGAGAAGTCGGTAAAGGTTAAGGCAAAGGTCGGCGTGCGGCGCGTGCTGTCCGCGTCGGGATGGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4871-4423 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERKC010000021.1 Serratia rubidaea strain JGM70 scaffold21_size36265, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4870 28 100.0 32 ............................ GCAAACGCACCTAAGCTATTGATTCTACAATC 4810 28 100.0 32 ............................ TGCTCGTTAAGGCGCGGAACACCAACGTCCGC 4750 28 100.0 32 ............................ GGCTGGCGCTTCTTACACGCCTTATAAAGCCT 4690 28 100.0 32 ............................ GGCATGATTTTAATAAAAGCCTCGGTGATGAA 4630 28 100.0 32 ............................ TCCGCTTGCGCCAACTTATCCTGCGCCATAGC 4570 28 100.0 32 ............................ AGTTTCGGTAATGGGATAGTACCCAGGCCAAC 4510 28 100.0 32 ............................ CAGATAGCATCCAATCTATAGCGCGCGCCAAA 4450 28 92.9 0 ......................C....G | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGGCGTTGACCGAGCTGGAGCAGCACGGCTGGCGTAAGGGCTTGCGTGACTATACCGAAAGCAGCGCAATATTGCCGGTGCCGGCAGATGCGGCGTATCGTACGGTGCGCCGCGTGCAGGTGAAAAGCAACGCCGAGCGGCTGCAGCGCCGTTCGGTTGCCAAAGGCTGGCTGACGATGGAGCAGGCGCAGCAACGTATTTCGGCGGTGAAAGAGCAGCGCAGCACGCTGCCGTTTATCCGCTTGAAAAGCTTTTCCAACGGCCAGTCGTTTTTACTGTTTATCGAGCAGGGGACTCTGCGCACCACGCCGACCGCCGGTGAGTTCAGCGCCTACGGTCTGAGCGTGACAGCCACCATCCCTTGGTTCTGACCCTTTTTTTGCACACAATCCTAACCTGTTGATTTTGCAGGTTAGGATTGAAGCATCTGAAAAAAGGGTTTTTAGTGGAATAACGAGGGTTTGGCTGTTAAAACAGTCGATTAGCGGTAAACTGCAACA # Right flank : TTACACCAAGGAATTTTGCTAACATATTGCGAGGGCAAACAGGCATTATTTTCTTCAAAGATTATTGGCAGCGTGGAGGTGAAAGCTTTCGTAACCGCTCGGGCGATCATATTGACTTGTGGAACGGTGCTCGTTTGACGACTAAAACGAGTTATTTCCGTATTCAGTGGGGAATATCGTTAGCGGGACGTTTTAGTGATTTCTTTAAATCGAAAGAAATAGGGTTTTGGGGAGTAGTATGAAAAGGGTCCTCGCTATTATCGTTGGGGCAGTGATGGGCATTGTGCTTATATGGTTGGCGTATCCTTATATTTCAGATTGGCTGGTGGGACCGGTTCATGGTGAAGACCAAATGTCCGCGAACTTTGTTCTGCTGCTTGCCGGGCTGGGGATAGGGTGCGTCGTTGGTGGTCTGGCCGGCGGCCTGGCCTATTCCCGTTTGACTAAGGGATAGCACCATAAACAATGCGTTAAGTATTCAGTAGACTTATATTCATTCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 19045-16879 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERKC010000021.1 Serratia rubidaea strain JGM70 scaffold21_size36265, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19044 29 100.0 32 ............................. AATATCTGCGATGTCACGCACGCTGACATCAG 18983 29 100.0 32 ............................. CACTGATGTCGGGTAACAGGATAGCGATAGCC 18922 29 100.0 32 ............................. GCTTGTTTGTTCGAGGGCAACTTACACCCGGA 18861 29 100.0 32 ............................. CGCATCCCGCTATCTGATTACGTTTCAGAGCA 18800 29 100.0 32 ............................. CAAATCACAGGCGGTGGGGCTTATTGCCCGGT 18739 29 100.0 32 ............................. ACATTTCCGCCAAATCGCATTAAACGTCGATA 18678 29 96.6 32 ............................C TGATTTTCCCTATCGATAACGGATTGACGCGC 18617 29 100.0 32 ............................. TTCCTCGCCGTTCTGCTCGTCGCATTCGTTAC 18556 29 100.0 32 ............................. TCTCGTAAAACTTACCGATGGCCATACCCTCG 18495 29 100.0 32 ............................. GCTGTTAGTTATTTTCGTTGGGTAGTTCAACC 18434 29 100.0 32 ............................. GCGTACGCCGCCAGATCTCCAGCTGCTCGGGG 18373 29 100.0 32 ............................. CCTGCACACGGCGCAGCTCATCCTCCAGCCCC 18312 29 100.0 32 ............................. GCTGTGCGCACAAACTACCCTGTCGTCGACGA 18251 29 96.6 32 ............................T TTTCATTTCTGAGCCTCGACAATCGTCGGGGC 18190 29 100.0 32 ............................. CACAACGCCGCGCTTCCCAAACAGGCCGATGC 18129 29 96.6 32 ............................A TTGCCCGCGGCACGGTCGGCACGCACACGGGC 18068 29 100.0 32 ............................. AGCGTTACAATCAGTGCACGAACATAAACTGC 18007 29 100.0 32 ............................. CTTGGCACGGCTGGTTCTGGTGTCGAAACCCC 17946 29 100.0 32 ............................. ATACTCGCCGGAGATTTTACCAGTTATCGTCA 17885 29 100.0 32 ............................. CAATTATCCGTAGTAAAGACGATCTGAGCATC 17824 29 100.0 32 ............................. ATATTGCCACCGGTCTTGCTGAAACAAAAGAC 17763 29 100.0 32 ............................. CCAAACTCCAAATCGAGGGCATCGAAAACTTC 17702 29 100.0 32 ............................. TGGCAGAAGAGAAGTTGTCGTTTGTTCAACAG 17641 29 100.0 32 ............................. CTTCACGAAGGCTCGGCGCGCTTCCAGGTGAT 17580 29 100.0 32 ............................. CCCCTAACAGCGTTTTAAAAAGAATTAACAGC 17519 29 100.0 33 ............................. TGCTTGTCCGGCTCAGGGTGGATGTTGCCGCAC 17457 29 100.0 32 ............................. GTGATCCATATGGGACATTCAACGAATTCCGG 17396 29 100.0 33 ............................. TTGCCTGATATTAACCTGCCGGTATGGATGAAC 17334 29 100.0 32 ............................. CCAGAATTGCCGCCGGTTACACCTTCCAACGG 17273 29 100.0 32 ............................. CGAGGCCGCCACGTCGTGGCATCAAATAGCGA 17212 29 100.0 32 ............................. GTGGCAGCATGACACCAGAAATAATTCTGGAG 17151 29 100.0 32 ............................. GGCAAACTGTCACAATAGGCGGTGTAAAATAT 17090 29 100.0 32 ............................. AATGCTTTCAACTACCCGGTCATATTGCCAAC 17029 29 100.0 32 ............................. GCCGAGGCTGCCGCCGAATCTGAGCGCGAGAA 16968 29 100.0 32 ............................. ATGTCCATTTTGGGATTGCTGAGCACAAAACC 16907 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.6 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GTTAATCGAGGAGGTATTGGCTGCCGGGGAAATCGATCCGCCGCAACCTTTTCCTGACTCTCAACCTCCCGCGATTCCAGAGCCTTTGACCATCGGCGATATTGGCCACCGGGGGTGATACGGTGAGTATGCTAATGGTTGTGACGGAAAATGTACCGCCGCGGTTACGTGGCCGTCTTGCGGTCTGGTTGCTGGAGATACGGGCAGGCGTTTATGTCGGAGATATTTCTCGCAAAGTACGTGAAATGATTTGGCAGCAAATTACCACCATGGCCGAAGAAGGAAATGTGGTTATGGCGTGGGCCGCGAACAATGAGTCTGGTTTTGCGTTTCAAACATACGGTAAGAATCGTCGTATTCCGGTGGATTTGGATGGGCTGAGGTTAGTGTCTTTTAGACCCATTGAAAATCAATAGGTTACTGTTCTTTGAAAATCAGGACCATGTGGTAGATTTTTAACACCTAAAAAAGTCATTGTAAATCAGTTATATATTTTAAGC # Right flank : CTATAACAACCTCACCCGGCAGTTACCGCACCAGTTCCAGCCCGGCGACGCGTCGCCAGTAGCCGTTGCAGTCGCTGTCGTTGGTGAGCGCCAGCGGCTGCCCGGCATTTTCGTTGGCGCGGAACTGCTCGAGCATCGCCAGCGTTTCCACGCCCTGCGGCGACAGCCGCACGATATCGACCAGCTCTTGCATACCGCTTAGCTCATTACCCAGGTTGTAGCAGTAGCCGCTCATCGTCTGGATGCCGTTGAGCACGAATACCTGCTGGTTTTCCTGTGAGCGCATAGCGCGCCCCTGCGGGTATTTGATGCAGCAGGTTTCGCACTCATCCTTGCCGCGGTTTTCCGAGCGTGCGGTAAAGCAGCGGGCGGAGTAGGCCAGCGGCAGGTGGCCGTAGCCCAGCACCTCTACCTCAAAGCCGCGGCGGAAGCCCAGCTCGGCGCACTGCTCCAGCACCTTGCCCAGCCAGTCGCGGGACAGCTCCACCGGCATGCACCAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 29846-28982 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERKC010000021.1 Serratia rubidaea strain JGM70 scaffold21_size36265, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 29845 29 100.0 32 ............................. AGCCTATCGCCTGGCATATTTGCATTGGTAAT 29784 29 100.0 32 ............................. TGAGGCCACAGGTGCCGCTCGTCATCAAACCC 29723 29 100.0 32 ............................. TCAACAAAATCGGCAATCTGTGCGAGCGACTC 29662 29 100.0 32 ............................. GGCTGCCGCCGGAAAACCCCGCTGAAAAAATC 29601 29 100.0 32 ............................. CCTGCGTAAAGCGCTCTGCGATGCGGTGCCGG 29540 29 100.0 32 ............................. CGCGCAAAACATCAAAATATCGGATGGTGTCA 29479 29 100.0 32 ............................. TAGCTAAGACAAAAATTGCTGACACGGAAGAA 29418 29 100.0 32 ............................. CCTATTGTTGATTTGCTCATGGATATTGATTC 29357 29 100.0 32 ............................. CCGGTAGGCAATGACAGCATGAGCGGATGGCT 29296 29 96.6 32 ..A.......................... GCAATCCGGTCTTTCGACGGTAGCGCCCAGAC 29235 29 96.6 32 ..A.......................... CCAATTTACGAGTTGGCTTACCAATGCAAATA 29174 29 100.0 74 ............................. CTGATGATCTGCAACTCCCGCCGGGACGTTATGTGTTCCCCGCGCGAGTATCGCCAGTGGACGGAAGACGAAGA 29071 29 100.0 32 ............................. AACCCGAAGTAAGTGATATTGTCGCCAAGCGT 29010 29 86.2 0 ............TC...A.......G... | ========== ====== ====== ====== ============================= ========================================================================== ================== 14 29 98.5 35 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GTGGAGATGATTTACCTGACGCTGGCGTTTATCACCACGCCGATTTTCTACCTTTCCGGCACCATCTGGCCGCTGCAGGCGATGCCGGGCTGGGTGCGCGCCATTTCATACTGCATTCCTTCCACCTGGGCCACCAAAGCGATCGCCGGGGTGAACCAGATGGGGATGTCGCTGAATGAAGTGGGGAACGACGTGCTGATGTTGCTGTTGCTTGGCGCGGTGTATACCGTGATCGGTATCGGGGTGGGGCTGGCGCATAACAGCGTAGCGCTGCGCAGCCTGTTCCGGAAACGGCGGGCGTAGTGTTGCGGGATAAAGCCTGTTCGGTACGTGCGGCAGAAGGTGAGTGATTATCTGCTTGGTGCCGCGGCTATTCTGATGGCGAAGTGAAAATAAATTTATTGTTTTTCAATTGGTTATATTTTTCAGATTATCGTGAAAAGTCGGTGGCTTTTTTAAGTGGTAAAAAATCAATATAATTCAATTGGATATATTTAGTG # Right flank : GAGTTAGCTGAGCTGAAAAAGGCCCTTGGCGGGCCTTTGTTCATTGTGTCATTTGTTCTGGACGGCAATCGTATAGTGCCGCCAGCTTTTCACGGGTTTTTTTCTGTGGTTTTGAGTCTACAGATTCCCATTGCGAAACAGCTGATTGTGTGGTGCCAAGTCGTTCTGCTACCTCATACTGAGATAAACCACGATAAATACGCCAGGCAGCGATCAGGCTGACTTCCTGATCAACCATGATAGACACGACATCATGAGGGATCACTTCGTCGTCGTTGTCGCCAGCGTGATAGGGGACGTCCGCCCAATCATTACTGATGAGGCGTTCGTATTCATCGATTGGCAGTACAACATACTGCGGTTTTCCTGCCACATCGTTAATGTATTGAGGTTTTGACATATTTCATTCCGGGTTGCTAAGAGTCGCGGTTAATGTCATCAAGGAAACTGGCGGGTTTCCCCGCCTTGTTAGTAGGTTGTCGATGTTCTGCGCTTAACTT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4861-5667 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERKC010000085.1 Serratia rubidaea strain JGM70 scaffold85_size16454, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4861 28 100.0 32 ............................ TGGCTCCGATGGTCACGAAACTGGCCGATGAG 4921 28 100.0 32 ............................ CACATCATGGCCCATACGATGGAAATGCGTGA 4981 28 100.0 32 ............................ AGCAGTTCACGATGCGGATCATCTGGCGAGAG 5041 28 100.0 32 ............................ ACTCGACAGAACGCCCGACCGACACCGCTACG 5101 28 100.0 32 ............................ ATCATATTTACAATTTCCGCCTGCGTCCGTCC 5161 28 100.0 32 ............................ AGGGGAAAAATTGGTCGGGATTCCGACCGCAC 5221 28 100.0 32 ............................ GTCAGCATCATGCTGGACACAACGCTGGAGGC 5281 28 100.0 32 ............................ AGTAGACCGCCACCGCCCGGCCATCAGTAGAA 5341 28 100.0 32 ............................ TGTCGCAATGAGGGAACTGAACTCATCAAAAC 5401 28 100.0 32 ............................ GACATACGCCCCGCAGGGTGTGCACGACCAGT 5461 28 100.0 32 ............................ TCGACAGGCACACAGTAATCGCAGCCGCGTGG 5521 28 100.0 32 ............................ TACACAATCACTGCAGCATTCCACGACCCGAA 5581 28 92.9 32 ..............G..........C.. ACAGAAACTGCAGGTAATGCGTGAGCATGCTG 5641 27 71.4 0 ...........CG.......-..CCGTC | ========== ====== ====== ====== ============================ ================================ ================== 14 28 97.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATTGAATTTTACCTGCTCTCTGTTGGTTACTGTCCCCAGGGTTGCTCGCTGACATACTGCAGGAAGCTCATCATACCCAGGCAAACCAGTACGCCAACCATTACTATTATCGCTAATCTCATAATGTTACCTTCCAGTCGTTTGGTTATCTGTTTCGTTATTCGCACGCCGGCAGGCGTGTGAGTAAAGCAACTTATCTGCCTTACGAATTATTGGCGACCCAGTATAACCAGAACTGGCCAAGGTTGGGAGTCAGGCGGCTAAAGGGTGGGAGCGAGGGCGTAACAGCGGGGCAGATATTTACTATCGGCATAATGGTATCGGGCTAGCCAGGTCGTCGGCTGGTTGTTTTATGATCCGGACTATGCAAACCCTTTTTTTTACGCTGTTTTTAAGTTATTGATATATATTGGTTGAATTGAATGCGAGAAAAAGAGCCTTTTCGGGCGTAATCGGCAGGAGTGCTTTTAAAAACAATAGGCTAGTGCTAATCTGCAACA # Right flank : CCCCTTGCTGTGATTCTTATTCCTCAAGACGATGACAAACCATTTCGATATTGTGGCCGTCCGGTGCAATCACAAAGGCGGCGTAGTAACTGGCGTGATAATTGGGACGCAGGCCTGGTCCGCCGTTATCTTTACCGCCGGCCGCCAGCGCCGCCTGGTAAAAATCATCCACCTGCCGGCGGCTGTCGGCGATGAACGCCAGATGCAGCTGCGCCGGCTGCGCCGTGGTCTGGTACAGGCACAGTGAGGTATTATCGGGGGCGGCAATCTCTATCCCATAGTCCGGCGCGCCTTCATCCACCACGCTCACGCCCAGCGGCGCTAGTGCCTTAAGAAAGAAATTTTTGCTGGCCTCATAGTCGCTAACGCCAAATTTTACATGGTCAAACATAGCTTCCCCTTACCAGTGATGAGCCGTGCGCTCACTCCAGTATAGCCGTGCGGGCCGGGTATACTGCCGCGCTGCGGTTTTTTCTTCTTCCTCGTTTTGACGGGGCGCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //