Array 1 53479-51793 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDUR010000036.1 Streptococcus thermophilus strain Strac42 Contig_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 53478 36 100.0 30 .................................... TGTCGTTCTATACTATCAAAGCGGTCTGAA 53412 36 100.0 30 .................................... CATAGATGGTAGAGAATTTGCATATGCCAC 53346 36 100.0 30 .................................... TATACCAGAAGATGGAAGAACAATCATAGA 53280 36 100.0 30 .................................... TTGTGTCGGTTACTATCATTTTGCCCGTTT 53214 36 100.0 30 .................................... TTCGGTATGGGCTAAACATACCAGTACCAC 53148 36 100.0 30 .................................... CCAAAGAATGGACCATCTCAATGAAAACAT 53082 36 100.0 30 .................................... TCAACAAATGTCATTGCTTTCTACTAATAT 53016 36 100.0 30 .................................... ACCTCCCGACAGACCACAGTTCGGATATCA 52950 36 100.0 30 .................................... CCAAACAATTACTGTTAGACATGCTGATGA 52884 36 100.0 30 .................................... TGCCGTCGATATTCTGCTCGATAGTTCGCA 52818 36 100.0 30 .................................... GTCACAATCTGGCGGAGCTGGTGGACATGT 52752 36 100.0 30 .................................... TATTTCTCTTTTAACAACAGATGTTTTTTT 52686 36 100.0 30 .................................... CATAGTTTCCCCGTATATAAAGTAGTTTCT 52620 36 100.0 30 .................................... AGAGGTAGCATTAGAATCTAGCCGTCTGGG 52554 36 100.0 30 .................................... TTGCCTGGCATCAAATTCACTGATGCCAAC 52488 36 100.0 30 .................................... CATAGTTTCCCCGTATATAAAGTAGTTTCT 52422 36 100.0 30 .................................... TTTAATGTGGCAAGGTGCAGAAATCTATAT 52356 36 100.0 30 .................................... AAAAGGTGACCAAGGTATACCTGGTCCTAA 52290 36 100.0 30 .................................... AAACAAAGCACAAGCCTTGGTAAGTAGCGA 52224 36 100.0 30 .................................... AAATGCACAGATAGCGCCTTTGAATATTAA 52158 36 100.0 30 .................................... TGTGTTTCTCTGAACGCCATTGACAGTCAG 52092 36 100.0 30 .................................... CGCTAGGGTCTCTGGTGACGCTGAGGTCTC 52026 36 100.0 30 .................................... CCAAAGAATGGACCATCTTAATGAGAATAT 51960 36 100.0 30 .................................... AGTGTTTTTCTGAACACCGTTCACAGTCAG 51894 36 100.0 30 .................................... CGCTAGGGTCTCTGGTGACGCTGAGGTCTC 51828 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTGATGTTATGACGAAATCGTCAGTATTTTTTGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 7368-8211 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDUR010000024.1 Streptococcus thermophilus strain Strac42 Contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 7368 36 100.0 36 .................................... TTTCGTAACTGTTTAATTCTGTTCACTTATTCCACC 7440 36 100.0 43 .................................... TGACCTGGTGCATATATACCAACCAGTTTGTCTTTAACATTTT 7519 36 100.0 35 .................................... TCTTAAATCAATGTCTTACCTAAACCGTGAATTTT 7590 36 100.0 37 .................................... AACATATTATTTATCTCCATATATTTTTTTCTTTTTG 7663 36 100.0 34 .................................... GCGTTACCGTAGACCTCTGCGTTACCACTTACCT 7733 36 100.0 37 .................................... CTCCATTAAAAAAATCAGTAAAAATGCCACATTTCCA 7806 36 100.0 39 .................................... AAGTCAAAGTCTTCTATATATGTTGAGTTGGTGACCATT 7881 36 100.0 41 .................................... TGTTCCAATTTAGTAGCATTAATGAATCTGTACTTATCTAA 7958 36 100.0 36 .................................... GCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 8030 36 97.2 38 .......G............................ TCTTTCGACTTAGAATCGTATTCAAATTTCATGTTTTT 8104 36 100.0 36 .................................... TTAACGAAGTTGTCATCAATCATTACTCCTTGCCTG 8176 36 83.3 0 ..............................TTTTTT | ========== ====== ====== ====== ==================================== =========================================== ================== 12 36 98.4 38 GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCAACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : TGAAAATTTTGAAAACAATATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGGGTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGATGACCACGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGGCAGATAAACTGTTAGAGATTTTCAATAGCGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 65064-66683 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDUR010000014.1 Streptococcus thermophilus strain Strac42 Contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 65064 36 100.0 30 .................................... AATCAGCGTAGTCCTCTTTGTCTCTAAACG 65130 36 100.0 29 .................................... CAATGTCTTAAGTCCTGACATAGCGTCTG 65195 36 100.0 30 .................................... TCTTTCTAAAGTCTAAGCACTTCCACTCAC 65261 36 100.0 30 .................................... CTCCTTCTATAATTGTTCTTCCGTTCTCTG 65327 36 100.0 30 .................................... TTTTGATGACCGCACAAAAACTGTAGTTGA 65393 36 100.0 30 .................................... GTCTAACCTATACCGTCAAAGCAAGCGATA 65459 36 100.0 31 .................................... GATGGTATTGCTGGTAAGGATGGTGTTGGGG 65526 36 100.0 30 .................................... CGCACTCCTAACTATTCTTGTGTCAGTTTT 65592 36 100.0 30 .................................... CTGGTGTGCGTGTGCTTGGTTTTGGTAACT 65658 36 100.0 30 .................................... GTAATTATTAAATTAAAGGAGGAAACAACA 65724 36 100.0 30 .................................... ATTTACTTGGACATTATATTGTTTATCTGC 65790 36 100.0 30 .................................... CAGTATTGATTGAGTCCCAAACGCTTGACC 65856 36 100.0 30 .................................... AACGGAGAAGGAAACAGAGTTTATGTTTTG 65922 36 100.0 30 .................................... CAGTGTTGGATAAGTCGATTTTATCAACTG 65988 36 100.0 30 .................................... TTTCGCCTCTTCCGCAGTAATCGAAAACGT 66054 36 100.0 30 .................................... GCATCCCTTGTTTCAATTTCTCCAATTTCA 66120 36 100.0 30 .................................... ATAAATAAAAGGACTTGCTTCCAATCCTTT 66186 36 100.0 30 .................................... TCAGCCACCGATTTATCTTTAGATGAACCT 66252 36 100.0 30 .................................... AGATCTGCTGTAATCATGTGATTATCTCCT 66318 36 100.0 30 .................................... ATCATACATGATAGTTTGTCAACACTTTTG 66384 36 100.0 29 .................................... AATTCTGCGACGTCGCACAATTTAGTGTA 66449 36 100.0 31 .................................... ATGCGAAAGAAGTTGCTGTATCTATTGACTA 66516 36 100.0 30 .................................... TACGAATAATTAAACCCGCCCACGAAAACT 66582 36 100.0 30 .................................... GGGCAATGATCGGTAAAGGTTTGGCTGATG 66648 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //