Array 1 170631-170483 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQDE01000001.1 Pasteurella multocida strain 2165PM isolate swab isolate 1 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 170630 28 100.0 32 ............................ TCAAAATTAATCTACCAACTGAACTGGAATAT 170570 28 100.0 32 ............................ GATGTATTCCTCGCAATAAGAACGACCATAAG 170510 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 95288-91299 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQDE01000026.1 Pasteurella multocida strain 2165PM isolate swab isolate 1 contig_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 95287 28 100.0 32 ............................ AAATGGTAAACCAACAGTAAACACTAAGACAC 95227 28 100.0 33 ............................ CTGTTGAGCTTGTATTCTTTAAAGAATGATTGA 95166 28 100.0 32 ............................ ACTACGTCTTGAACATTATATTCTAGCATTTC 95106 28 100.0 32 ............................ TTTCATGATATCATCGCCTTGTGGATTGAAAG 95046 28 100.0 32 ............................ TTATTGAAAATGCGGTAGTCGCCTTTATAAGT 94986 28 100.0 32 ............................ ACCCTCAGGAGTCACCCCACCTACTGCCATAT 94926 28 100.0 32 ............................ TCAATGGCTGCTTCTGCTGCTGCTTCTACCAA 94866 28 100.0 32 ............................ TAAGTCTTCTTTCTTCATCCTGTTGAGCTTGT 94806 28 100.0 32 ............................ ACCTGAAAAACCTTTTGACATTGACACGAACG 94746 28 100.0 32 ............................ TACACTTCTCACCGATCAAGCCCACTGAGAAA 94686 28 100.0 32 ............................ GGAACACTTCGATAAGAACACACATGAGCTTG 94626 28 100.0 32 ............................ AAATTATTGCCAAGTATGCAATCGGTCATGGG 94566 28 100.0 32 ............................ CTTGTCTGTGAACTCAGTTGGTGTCCATCCAG 94506 28 100.0 32 ............................ TTTATGGAGCAGGGGACGCTAAGATTGGTGAG 94446 28 100.0 32 ............................ ACTAGATGCTGGGAAGACGTGTTTAGTTTGGT 94386 28 100.0 32 ............................ ATATAAAGCCCGTCCGTAGGCTTCCTTACCGA 94326 28 100.0 32 ............................ TATAAGGCTCCTGTGGGAAGTCCTTGATGTCT 94266 28 100.0 32 ............................ TAAGAAATTACTAAATGTAGCGTAAAATGTGC 94206 28 100.0 32 ............................ ACTCATTTAGTCGACCGACAGGTCGCTTTGGA 94146 28 100.0 32 ............................ AATAAGACAGCCCTTTTGTGTTCTCCCTAACT 94086 28 100.0 32 ............................ ACTGATTTATTAAAGAACAAGTAAGTTAATTG 94026 28 100.0 32 ............................ TTATGGTTAACTTATTCTTACAGGCGCACTAC 93966 28 100.0 32 ............................ AACGTGACTGATTCGAGTTCCAAAGCTACCTG 93906 28 100.0 32 ............................ TCAAAAAATCATCTAAATAAATATCAGACAGA 93846 28 100.0 32 ............................ TATACCCCACAAGGTATTAATGTGCTAAACTT 93786 28 100.0 32 ............................ TCGAGGACATCTACCCCTTTATCATGTATTAA 93726 28 100.0 32 ............................ GCAATGCAAGACAGTAAAGCGTATGGAGCTAT 93666 28 100.0 32 ............................ CGCTGAAAAACATTATATAGAGGTAACAAGTG 93606 28 100.0 32 ............................ TTATGGTTAACTTATTCTTACAGGCGCACTAC 93546 28 100.0 32 ............................ TTTTAGACACGCAATTAGTCGACCAGCAGGTA 93486 28 100.0 32 ............................ GACGATAATATCAAAGAACTCCTTTATGTCAT 93426 28 100.0 32 ............................ GTTATCAGCGTCCACTAGGTCATTTAGTGTCT 93366 28 100.0 32 ............................ TTTTATCCAGACCGTACAACGTTTGAACCGCA 93306 28 100.0 32 ............................ AATCAGTGCAACCTGTGCTGTCTGTAAATTGT 93246 28 100.0 32 ............................ TATTGACAACTGTAATTATCTTCTATATTATA 93186 28 100.0 32 ............................ TACGGCTTCTTCTTCACTTACATATTGTAAGA 93126 28 100.0 32 ............................ TAAAGGCACACTATCCCCTACCTCTTCTTCAC 93066 28 100.0 32 ............................ TTTAGTTACTCATCTAGTCATCCATTACTCAT 93006 28 100.0 32 ............................ ACCTTTAAACAGAAACGCTTTCGTTCCACTAG 92946 28 100.0 32 ............................ AAAAGGTTACACACCTAAGGAGGTATTAGAAG 92886 28 100.0 32 ............................ TTTAGTCAACTCATCGTCATCCTTTAGTCAAC 92826 28 100.0 32 ............................ CCACTAAGACTACTTTGAGCACGTCACCTTGA 92766 28 100.0 32 ............................ TCCTCGCGCTTGGACGAGAATCGACAAGGGTG 92706 28 100.0 32 ............................ TACTAAAAGACTCCTCTTTGTTATCGAAGTGG 92646 28 100.0 32 ............................ GTTTGGGAGTGGAATTGTTTGATGAAAACAAA 92586 28 100.0 32 ............................ GTTTCTGACACTTCAACTGTTAGACTGAACGT 92526 28 100.0 32 ............................ TTCTGCGATTTTAGTCGGTGGGTATCATCGTG 92466 28 100.0 32 ............................ AAGCCCTTGTTACACCAACCACCTCTGTTGCC 92406 28 100.0 32 ............................ CAGCTCGCAATGATTCTGTTTGAAAAGGCGTT 92346 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 92286 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 92226 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 92166 28 100.0 33 ............................ CAGGAAAAAAACCGAAGTATTTAAGAGATTTCA 92105 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 92045 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 91985 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 91925 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 91865 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 91805 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 91745 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 91685 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 91625 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 91565 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 91505 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 91445 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 91385 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 91325 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 67 28 99.5 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //