Array 1 645181-647590 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822036.1 Streptococcus thermophilus isolate STH_CIRM_1055 chromosome STHERMO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 645181 36 100.0 30 .................................... TCTTTCTATAGCATAATTGTTAGTTGTCCT 645247 36 100.0 30 .................................... GAAAGAATCGGTCTTCTAGATGGATTCCAA 645313 36 100.0 30 .................................... TAGGAAATTCATACCCTGCAGATATATCAT 645379 36 100.0 30 .................................... AACGATAAAAAAGAAGAAGCTTTCACGCCT 645445 36 100.0 30 .................................... TCGATTTTAAGCCGTGTATTTTGCTAGGTA 645511 36 100.0 30 .................................... GCTTGGAGGCGTCAATGTTCGCAGCTTATC 645577 36 100.0 30 .................................... ACCTGTCATCTCTGGGAGTTAAATTTCCTT 645643 36 100.0 30 .................................... ATTAGCACGAGCCTCTGTATACTGTTCTTT 645709 36 100.0 30 .................................... TTTGGTCTGGTGCGCCTTTTATATTGAATT 645775 36 100.0 29 .................................... GGTTCCCTATGAGCAAAGGACAACGCTTT 645840 36 100.0 30 .................................... TCGATTTTAAGCCGTGTATTTTGCTAGGTA 645906 36 100.0 30 .................................... GCTTGGAGGCGTCAATGTTCGCAGCTTATC 645972 36 100.0 30 .................................... ACATTGAGTAAGTCAATAGTTTGCGATGGC 646038 36 100.0 30 .................................... TAGAATAAGTGAATGGGAAACTGACGGAAC 646104 36 100.0 30 .................................... ACATAGAAGGCTAAGCAATCAAGCAAAAGA 646170 36 100.0 30 .................................... ACGACATCAAGCTGATTATCTTCTACATAC 646236 36 100.0 30 .................................... CTGTCTAACATAGTCCCAAACTTTATCATA 646302 36 100.0 30 .................................... CTAAAAACGGTGTTCTATATCGAGGTCAAC 646368 36 100.0 30 .................................... TGTTTCCATCCGTGGTGAAATGGTAGAAGT 646434 36 100.0 30 .................................... TTGAGCATTTACTTACTAATTTCAAACGGT 646500 36 100.0 30 .................................... AGATGACCTATAATATAATCAAAATCACCT 646566 36 100.0 30 .................................... TCTATCTTAGGCGGTGGACTGATGACGTTA 646632 36 100.0 30 .................................... GATAGATATATATATTATATCACAATCCTA 646698 36 100.0 30 .................................... TTATAGTATATCTAATGTGTTCCCGTTTGT 646764 36 100.0 30 .................................... TTGAAATTTATAATATGGATGTCGATGATG 646830 36 100.0 30 .................................... TCTAGAGACCTCTTCGTGTTGTCACAACCT 646896 36 100.0 29 .................................... GCTCTTTCCTACTCCTGTGTCTCCTATTA 646961 36 100.0 30 .................................... GTTTATCACTTATTTGATATACACTTATAA 647027 36 100.0 30 .................................... ATATCGGTGGTGGTGCGTTTGAAACTGACA 647093 36 100.0 30 .................................... GACCCACGGATACCGCCAAAACAGCACGTG 647159 36 100.0 30 .................................... GAAGTGATAGACGTTGTTAACTCATCAGCA 647225 36 100.0 30 .................................... TTTCTGTGTACTCCATCGGCTTTTGAGTGT 647291 36 100.0 30 .................................... GCTTTGCGAGTAACGCCGGTTGCTTTTCCT 647357 36 100.0 30 .................................... TTGGCATCAGTGAATTTGATGCCTGGAAGT 647423 36 100.0 30 .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 647489 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 647555 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 37 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1371438-1370079 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822036.1 Streptococcus thermophilus isolate STH_CIRM_1055 chromosome STHERMO, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1371437 36 100.0 30 .................................... AGTAATATCAAAAAAGCCCCCTTGATTATC 1371371 36 100.0 30 .................................... TTGTGTTCGTTTAGGTGTGTACCATAGAAA 1371305 36 100.0 30 .................................... AACGGCCTATGCTTAATAAAACAACTTAAA 1371239 36 100.0 30 .................................... GAATGGCTTGTCTATTTTTGGGCTTTTGTG 1371173 36 100.0 30 .................................... CGTTAGCAGTTTCAATCCGTAGCCACACCT 1371107 36 100.0 30 .................................... CTCAATCTAATAAATGGATTCGGAAAGACC 1371041 36 100.0 31 .................................... CTAGAGGTGACCAAGGTGTACCTGGACCTAA 1370974 36 100.0 30 .................................... CTTCTTAAAATTGAATAATTCGAAGTACAT 1370908 36 100.0 30 .................................... TTCTAAGTCAAAAGAATATGATGCTAGTGG 1370842 36 100.0 30 .................................... GGTGGCGCTACACATACACTACGCTACGCT 1370776 36 100.0 30 .................................... TTTTGCTAGGATATGTCCGAACGTCGATAC 1370710 36 100.0 30 .................................... TAAAACGCCCGTAGCACGATTTTATTGCAT 1370644 36 100.0 30 .................................... AAGCTAAGTAAGCTATATTTTGACCGTTAT 1370578 36 100.0 30 .................................... CACTAGACCACGCAAACTATAAAATAAAAA 1370512 36 100.0 30 .................................... TAAAACGCCCGTAGCACGATTTTATTGCAT 1370446 36 100.0 30 .................................... AAGCTAAGTAAGCTATATTTTGACCGTTAT 1370380 36 100.0 31 .................................... CTTAGCCTTGAAATGGCACGTAGTGAACTTA 1370313 36 100.0 31 .................................... CGGACAGCGATAAATACACTCTATACAGAGA 1370246 36 100.0 30 .................................... TAAATAATAAAGTTTTCTACCAAGATAATT 1370180 36 100.0 30 .................................... CACACTTGCACAAGTATGTTTCAATCTTAT 1370114 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAATCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //