Array 1 65000-60122 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXHS01000009.1 Moraxella catarrhalis strain F20 B745ctg6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 64999 28 100.0 32 ............................ ATTCATAGTAGTCTCTCTTATAAATTAGTAAT 64939 28 100.0 32 ............................ AAGTTCTCTGTCTACTTGATCAATGGTAGCGT 64879 28 100.0 34 ............................ ACCTCGCCAGTTGAGGGGTGGATGTTGTTCCATT 64817 28 100.0 30 ............................ AAACTGTCGTATTTTAAGGCGGTAGGGTCG 64759 28 100.0 33 ............................ CTCAATCTCTTCTAGTTCATCTAGAAGTACCTC 64698 28 100.0 32 ............................ GTGTAAATCTTCTGAGTTGATAGCTTTATCGC 64638 28 100.0 32 ............................ TGTAGCACAACAAACGGTAATATCATCCTCAC 64578 28 100.0 33 ............................ TATCTGAGTATTAGCAAGCCCCAACCAACTTAT 64517 28 100.0 32 ............................ GATGATGGCTTCGTATGTTACTTCTTGTTTTA 64457 28 100.0 32 ............................ AATATAACGGCAGATTTAAAAACTAAAGAAGC 64397 28 100.0 32 ............................ AAAGTGTGGCTTGCAGCATTGTTAGCGTCAAT 64337 28 100.0 33 ............................ TTTTGCCACGCTCACGGTAAGTTGCTGTACATT 64276 28 100.0 32 ............................ ACATGACAGGCTCGCAGTCTTTGAGATAATCC 64216 28 100.0 32 ............................ CTAACCAAGTGCGTTGTACTTTTTCTTTTCTT 64156 28 100.0 32 ............................ TAATGGTGTGCCTAGGTGTAAAATATTACACT 64096 28 100.0 32 ............................ TTTAAGACCTGCACAGAATAAAGATAATCCAA 64036 28 100.0 33 ............................ ATCTATTACCGATCCAATTATGGTGGAAATATT 63975 28 100.0 32 ............................ TAGGTAACATGACATTTAGCTTGATACATAGA 63915 28 100.0 32 ............................ ACGTGCTTCCAATTCTTGGAAGTATTCACGCT 63855 28 100.0 32 ............................ AGTATATAGAAAAACATGTCTTCTTTTGAAAC 63795 28 100.0 32 ............................ CTAAACCGTCAGGCACATTATCCGCCATACCG 63735 28 100.0 32 ............................ ATCAATGCCATCTGCAAGGTCAGGCAAGCTAA 63675 28 100.0 32 ............................ TATTTTGCATAAAATAAAGCTTATTATAATGC 63615 28 100.0 32 ............................ TAAAATTTCACGCACAGGCTGATAAAGATTTA 63555 28 100.0 32 ............................ TAGTACAAGCCCAAGCCCTGGCGGTATGAATG 63495 28 100.0 32 ............................ TACTTTAAGATCATATACTAGTTGATAAGCTG 63435 28 100.0 31 ............................ GATATATCTCATGAGTAGTGCTTAAATATTT 63376 28 100.0 31 ............................ TTTGTCCTGCCTTAATCTCGCCCATGCCCAC 63317 28 100.0 32 ............................ ATTACAACTACTTCTGCTAATTCGTACATAAT 63257 28 100.0 32 ............................ TTAAATTGACGGGACTCGCCTGTGGCAACCAC 63197 28 100.0 33 ............................ CAGGTTTGTATTTTACATCAAAACCTTTGATAT 63136 28 100.0 33 ............................ ATACTCCTATAAGTATTTAATTAAAGTTAATAT 63075 28 100.0 32 ............................ AGAATAATGCTTCTTTTGATACTTCACCATCA 63015 28 100.0 33 ............................ TATAGCAGTTTGCCACTGCTCGCCAAAGCTTGT 62954 28 100.0 32 ............................ TCTCCAAAAATTGAGCGATTATTAACAAAACA 62894 28 100.0 31 ............................ AAATAGATCTTCTTTTGAAACATTGCCATCA 62835 28 100.0 32 ............................ TCTTCTCTGGCGATTTTGTGCATATCGCACAA 62775 28 100.0 32 ............................ ATGGTCAGGGTGAGCAGGCTATCGGCATCCCA 62715 28 100.0 32 ............................ GTGATATTAACGCTTTGCAAGCTGATAAAAAT 62655 28 100.0 32 ............................ AATTATCATCCAGAAAAGATCTTCTTTAGAAA 62595 28 100.0 33 ............................ AGATGACCAACCACCGCTTGCCAAATTTTCCAA 62534 28 100.0 33 ............................ GTTATCAACGACAGCATATTTTTGGCGGTTGTA 62473 28 100.0 33 ............................ AGTCAAATTCACCACGCCAAACACCGCCATCAT 62412 28 100.0 32 ............................ ATTAACCCTAGCTCTATCGCCGTCAATTAGCA 62352 28 100.0 32 ............................ TTTGTTCGATTGTGGCAAATGCTTGTTAATAA 62292 28 100.0 32 ............................ GTCATAATGTTTCATTACTGCAAGTACTAATC 62232 28 100.0 12 ............................ TTTTAGGCAAGG Deletion [62193] 62192 28 100.0 32 ............................ TTTAAATACTTTTTGTCTTGTACTCTTACGCT 62132 28 100.0 32 ............................ CATACTCGCTCATAAGCTTCAACCCCTGCTTA 62072 28 100.0 32 ............................ TGTGATATACTCAGCGTGTGCTTTGGCTTTTT 62012 28 100.0 32 ............................ TACCAGCCAAAAATAAGCGGCTCAATGAGTTT 61952 28 100.0 32 ............................ TGTAGTAGAAAGTTAACTACAGAACGCTAATT 61892 28 100.0 32 ............................ GTTTGCCAGTCGCCTGTTTTTGACCCTGACCA 61832 28 100.0 33 ............................ CAAGGTTTAGAAAAGGAACTTATGAGGTTTACT 61771 28 100.0 33 ............................ AAGCTCTTCTTGGATTTGACATTCGTGGTCAAA 61710 28 100.0 32 ............................ TCGCTTGAGCCATCTGAATTAAGTTCGATATC 61650 28 100.0 32 ............................ GTACTTAGTGTTTGACTCTCCGAAAATTGAGC 61590 28 100.0 32 ............................ AAACCCAAGCAGTAGCAAAGATAATAGCCGTC 61530 28 100.0 32 ............................ AGCGTCAAACGATACTGTATTGCTTGGTAATT 61470 28 100.0 32 ............................ TAGAAATCTTTCTAGTCTAGAAAGTTTAGTTC 61410 28 100.0 31 ............................ TCTGCTACTTTTTTCATTTCATTGTCAAGAG 61351 28 100.0 29 ............................ TTTAATTATTGAATGTTCTTTGAGATTGA 61294 28 100.0 32 ............................ AATTAAACGTTTAGCTTCATGGATAGCACCTT 61234 28 100.0 32 ............................ TGCTTGTAGATAACGCTTGTTATAACGCACCA 61174 28 100.0 32 ............................ AATGACTTTCCAAAACTTGCCATCTCTTTTGA 61114 28 100.0 32 ............................ TTTAGTGTTATGCTCATTTAATTCCTCAAAAA 61054 28 100.0 32 ............................ TTGATCCCTAGAGATTTTGTGCATCTCCATTA 60994 28 100.0 33 ............................ AACATAACTAGTCTCCTTAAATTTCAATTAGTA 60933 28 100.0 32 ............................ CTGTTTTTGTAGATTAAACGCTTAGCTACATT 60873 28 100.0 32 ............................ TAAACACCTGATTCTAGAATTGTAAAGCCACC 60813 28 100.0 32 ............................ AAAGACACGCACATGACAGGCGTATCACAAGG 60753 28 96.4 32 ..........A................. AAGGATTTAACTTTATACTTGTTACTGGTATT 60693 28 100.0 32 ............................ AATAGGCAAGCTATCCGCATTGCCCTTTAAGC 60633 28 100.0 35 ............................ ATTAACACCGTCCGCCAGCTTGGCGTTGGTGGCTT 60570 28 100.0 32 ............................ GTCTGATTTTGATACATTGCTTTTGAACTTTT 60510 28 100.0 33 ............................ ATCCACATAGGGGCATGCAAAACCATCATCATC 60449 28 100.0 32 ............................ TCTTCAACGGTTGCTTGGGTGATTAAATAGCT 60389 28 100.0 32 ............................ ACATGCTTCTACTGCATTATCTGCCCATACAG 60329 28 100.0 32 ............................ ATTTCGTCTTTATCTTCGCTATCTGGCATATT 60269 28 100.0 32 ............................ GTAATGACTTCCCCAGTCTTGATATCAAACGG 60209 28 96.4 32 ..................T......... GTCAATGCGACTGTTTGACAGCTTGAGCTCGC 60149 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 82 28 99.9 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : AAGTGCCTGTGCCAAGTAAAATTACTGTGGTATTGGCGATCGGAATGTTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGATATAAGATACGCCCGTCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAATGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATGATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATTATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGCAAAATAACGGATTGACCCTTTATTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATTCAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGGCTTGTTATTTCTTATTATTTTGGTTTATAATAA # Right flank : TTTCGTTCTACAACTACGCTGATTATTTAAAATTTTTGTACCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGTAATTTATGACCGAGCAAACCACCGAACAAACCACCATGGAAGAGATTACGGCTGAGGCGACAACCGAGCAAGTCGAAGCACTTCACAGCCAAATCCAAGCACTAGAAAGTGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATTACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTCCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //