Array 1 6881-6252 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUKO01000266.1 Pseudomonas denitrificans (nom. rej.) strain 994_PDEN 753_7014_139076, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6880 28 96.4 32 .............C.............. TCCCTTAGCGCCTGAGCCTCGGCTTCGAGCTT 6820 28 96.4 32 .............C.............. ACGATGATCTATCAGACCTATCGTGGCTACGC 6760 28 96.4 32 .............C.............. AGGTTGACCAGCATGGCCGGCATCGACAGCGT 6700 28 96.4 33 .............C.............. ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 6639 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 6579 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 6519 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 6459 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 6399 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 6339 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 6279 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATGACCGCAAGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 36628-38272 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUKO01000061.1 Pseudomonas denitrificans (nom. rej.) strain 994_PDEN 163_48689_777447, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 36628 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 36688 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 36748 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 36808 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 36868 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 36928 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 36988 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 37048 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 37108 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 37168 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 37228 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 37288 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 37349 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 37409 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 37469 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 37529 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 37589 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 37649 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 37709 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 37769 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 37825 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 37885 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 37945 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 38005 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 38065 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 38125 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 38185 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 38245 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48556-47147 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUKO01000061.1 Pseudomonas denitrificans (nom. rej.) strain 994_PDEN 163_48689_777447, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48555 28 100.0 32 ............................ TTGCAGTTCGTCGACGCCGTAGACGTTGATCT 48495 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 48435 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 48375 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 48315 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 48255 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 48195 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 48135 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 48075 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 48015 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 47955 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 47895 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 47835 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 47775 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 47715 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 47655 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 47595 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 47535 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 47475 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 47415 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 47355 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 47295 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 47235 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 47174 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //