Array 1 1065771-1061662 **** Predicted by CRISPRDetect 2.4 *** >NC_017856.1 Methylophaga frappieri, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1065770 28 100.0 32 ............................ AATACGCTGAACTTCTTTCTCTCACAGGTCAG 1065710 28 100.0 32 ............................ CACAACAAGATTTATGCTCAGACTATCCAGAC 1065650 28 100.0 32 ............................ TCGACAACGGCCAGTTCAACGAGCCGGGCGTA 1065590 28 100.0 32 ............................ AATCAGCCTATCAACAAACCCTCTGCCAATAT 1065530 28 100.0 32 ............................ ATGTGAAAGTGAACCGCTCCGCGTTGCTGAAA 1065470 28 100.0 32 ............................ ACTCTGGTGGCGTCGGCAATTACGCACAACAA 1065410 28 100.0 32 ............................ TCATGTTCACAATTATTATTTAACATAATATA 1065350 28 100.0 32 ............................ ATGTCACAACAAATCATTGAGTTCGAAAAACA 1065290 28 100.0 32 ............................ CAGTCCATCGCCGCGCCCCCAGAGACAGGCTG 1065230 28 100.0 32 ............................ TGATCTTGTATACCACTGCCATCTGACAACAG 1065170 28 100.0 33 ............................ TTCAATGTGACCAGAAACGTGAAGCTTAACTTT 1065109 28 100.0 32 ............................ ACCATTTTTTTACTGTTTCGGGTTTAACATCA 1065049 28 100.0 32 ............................ AACCAAATTCGCCCGGCGGCTGAGGCCATCGC 1064989 28 100.0 32 ............................ TTAAGCCGCTGACGGGGCAATTAAACGTGGAG 1064929 28 100.0 32 ............................ TCAGCGTCGAAAAGAAACGAATCAAGCCAGTC 1064869 28 100.0 32 ............................ TGCTTCGTGTCCGGGTTTCAACTTCATATGAT 1064809 28 100.0 32 ............................ AGCGCAGCGTTTTCTGCTGGCCGTGCTTTAGC 1064749 28 100.0 32 ............................ AGCGCAGTGGTGCCTTCTTGCGCGCGGGTGAC 1064689 28 100.0 32 ............................ TAATCCGCTAGCTCCGGAACGACTATTGATAA 1064629 28 100.0 32 ............................ ATTGAAGAAACTTATTGATGGGTTCCATTAGC 1064569 28 100.0 32 ............................ TAATCAGTATCTCAATATCATCCTCAGAGAGA 1064509 28 100.0 32 ............................ AACAAACCAGAGGGGCAGCAATGAAAACACTC 1064449 28 100.0 32 ............................ AAACTGCCAACATAAAAACTATCCATGACAAC 1064389 28 100.0 32 ............................ AGTAACCGTTCCGTGTCATCCTCAATCGCGTC 1064329 28 100.0 32 ............................ AGTATAAATAATTGGTCAAGCTGCTGTTTAGT 1064269 28 100.0 32 ............................ ATACACCGTTAATTAACTCAGGAATACCTTGT 1064209 28 100.0 32 ............................ GCAAAGCCGAGCGCGAATTTTGTCTGAAGGAC 1064149 28 100.0 32 ............................ GTCTATTTGCAACCATACTGCGCTGTTACTGG 1064089 28 100.0 32 ............................ TGTCGCAGCACCTCAGCTGAGCTGGCACGCCA 1064029 28 100.0 32 ............................ TGGTCGCGTCTGCATGTTGTCGGGATTCTGCC 1063969 28 100.0 32 ............................ TTGTGAAATCCTTCGTTGTAAGAGCCTTTAAG 1063909 28 100.0 32 ............................ TTATCGACCTCGACTTCCTTGGCGTCCGGTAC 1063849 28 100.0 32 ............................ GTGATACGGGTGAACCGGACTGAACCGTAACG 1063789 28 100.0 32 ............................ TCATAAGACCCGGCAGCAATCACCCCGCCGGT 1063729 28 100.0 32 ............................ TATCAGCCCACTGCCCAGCGCGAGCATCAGCA 1063669 28 100.0 32 ............................ AGTCAGTCAGTTATCCATCCGAACACTAAACG 1063609 28 100.0 32 ............................ ATGAAATTGTCCTTATGCTGTGATAATCAATG 1063549 28 100.0 32 ............................ ACAATCGTCGGCGATGGTTTTCAGGATTTGCA 1063489 28 100.0 32 ............................ TACCCCCCCGTGAGTTTCTTTGCTGTTACTCC 1063429 28 100.0 32 ............................ GCTGCAGCGACATGGATCTGAACGGCAAGGAA 1063369 28 100.0 32 ............................ AGTCAAGATGACAACGCCAAAGACCGCAGCCC 1063309 28 100.0 32 ............................ TTACATCTCAGTCCACTGGCACCAAGGCCGTT 1063249 28 100.0 32 ............................ ATCATCTGCCTGTTATGTCGATAATTGGCTGT 1063189 28 100.0 32 ............................ TTACATCTCAGTCCACTGGCACCAAGGCCGTT 1063129 28 100.0 32 ............................ ATCATCTGCCTGTTATGTCGATAATTGGCTGT 1063069 28 100.0 32 ............................ TGCTGCGGCCTTCTGCCGCTACCCTTGCTCAT 1063009 28 100.0 32 ............................ GCCATCACGCTTTGATGATGAATAACAAACCC 1062949 28 100.0 32 ............................ ACCAAGCACACGAACGCGAAAATCAATCCCCT 1062889 28 100.0 32 ............................ ACCAAGCACACGAACGCGAAAATCAATCCCCT 1062829 28 100.0 32 ............................ ATAAGGACGCTGATTTCTCGGCTGACTGACCG 1062769 28 100.0 32 ............................ CCCTGAATCGATTTGCACTGACCCAATCTCTG 1062709 28 100.0 32 ............................ GGTGATGGGTTAATGAACACCGAGGAACGCGG 1062649 28 100.0 32 ............................ TAAGTCTTCCTCAAACCCTGGCAATGCACGAA 1062589 28 100.0 32 ............................ AGAAAAAGGTAAATGGTATTTTTCAGAGGAAA 1062529 28 100.0 32 ............................ TGCATCCAGCGGCATCAGAGAAAGGTGAACTA 1062469 28 100.0 32 ............................ AGCCGAATGCGGTAAAGGCCCATCAGGGCAAC 1062409 28 100.0 32 ............................ AATGTTAAACATGAATGATGTTAATCTTTGCA 1062349 28 100.0 32 ............................ ACACTGGCCATCGCTGTGAAAAACGCCAGATT 1062289 28 100.0 32 ............................ AACACGTCACCATCTTGAACAGCTTGGCTTCG 1062229 28 100.0 32 ............................ TGAAAAAAAGAGAGGAGCGAAAGCCCCTCTCG 1062169 28 100.0 32 ............................ TGAACACCGTGTTTTTAATGTCTCGCAGTATG 1062109 28 100.0 32 ............................ ATTTAGCCCTGTCAGGTTCCACCTGATGGGGT 1062049 28 100.0 32 ............................ TAGCGATCAACCACATCCCTGAACACTGTGTT 1061989 28 100.0 32 ............................ AGCGACCCTCGGAAAAAAGCCAGTCTGTATCA 1061929 28 100.0 32 ............................ TACGAAGGGCGATCATTGGCCGATCAATATTG 1061869 28 100.0 32 ............................ TTCCGGCGACCAAAGTTTGTCATTCTTGAAAC 1061809 28 100.0 32 ............................ ATTAAGCAGCTACAGCAAGAAAAAGAAATGCT 1061749 28 100.0 32 ............................ ATCAGCATATCAGGTCGATACGTTGCCCGTTA 1061689 28 82.1 0 .............T..........AGGG | ========== ====== ====== ====== ============================ ================================= ================== 69 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGTCGTATTTGAAGAGAAACACTGCCACTGATTTTGTCAGTTGCCTGATATAAAAAGCGGCATACAGGCTATGAAATCGACCTGTGTTCAAGCTGGAAGGCTGTTTCGAAATCTGGAGTACCATTTAAAATGATCCAATCAAAGCGGCTGAAAGATTGGGTACAACCCAACCCCGGTTAAGCGATGCCATGAAAGGTAAAATCGAGAAGTGCACGGTAGATCGCTTAGTGAACATGCTTGCGGCCATTGGTAACACCGTGAATATAAACATTTCCTACGCAGCTTGATGCTACGCTTGGTATCTTGAGCCAAAGAAGAACGATAGCTTTTCAGATCCTTCAAAATCTCTGCTTGCGATGGTCTTCAATACCAAATTTTCCATGCCATAAAAAATTTACTATTAATCAATAGGTTAAAGTATTAGCTAAAAATAATGGTTAAATCCTCAATTTAAAGGTTAACTTATTGTTGTAGTTGCTAATTTATGCTTTATAGTTGT # Right flank : CAGCTTCGCATTGATATCAACCGACATCTCTGTTTTACCATGCGACTGAAGGATACATACGGGAATTTTAGGGTTTGGTGTAAAGGAAGCTGTAGATAGGGTTGAACGCTATGGGTTTCAATCTAGTAAGCACGCCTGAAAATGTTTTATGAATGCCGGTTGCGAGAGGAGAAGAAAAGGGGATTAGTCAGCATCTAAGCTGGTTGTAGTCAAAAACAAAAAAGCCCAGCAAAAATGCTGGGCTTTTTATATTTTGGAGCCGGAGATAGGACTTGAACCTACGACCCACTGATTACAAATCAGTTGCTCTACCAACTGAGCTACACCGGCAACAGGCTGCACATTATACGGTTGTGGTCATGTGGGTGCAAGCGATTCGGGCGTGGATTGTCATAAAATTTTAACGACCTATATCATTTTGAATTTGTTGGATTTCTTCGCTGTAATTCTCTAAATCTGTGCTAGCGGTTTGCCAATCCGGCCATATTTTTTGAAATGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //