Array 1 26730-29078 **** Predicted by CRISPRDetect 2.4 *** >NC_015683.1 Corynebacterium ulcerans BR-AD22, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 26730 29 96.6 32 ..............A.............. TTATCGCGCAGATTGTGGAAGAAGCCGAGAAG 26791 29 96.6 32 ..............A.............. GGATGCACCTTTGGTTCATTTTCATGCTTTGC 26852 29 96.6 32 ..............A.............. TCATTTTTGGCTTTGATGAAGCTGGCGCGCTC 26913 29 100.0 32 ............................. CCACGTCCCGCCTCAACCTCAGCGACAACATT 26974 29 100.0 32 ............................. GCACACCATTCTCAGCGATCATATCAACCGCA 27035 29 100.0 32 ............................. CACCCGGCCATCTGAGCCGGGGCGCTAATCTC 27096 29 100.0 32 ............................. TTCGTTTGTCACGACGTTGCGGACAATGATTG 27157 29 100.0 32 ............................. GCTTTGTCGTAGGGGGCGCTGATTGCAAGGAG 27218 29 100.0 32 ............................. AATGACCTACCATAAAACCATACAAAAACCTA 27279 29 100.0 32 ............................. AACGCCGTGCCCTTTTCAATCTGATCACGCAG 27340 29 100.0 32 ............................. TGCCAGACGGAACGTATCTTATGAGCACCTTT 27401 29 100.0 32 ............................. AACGCGCCATCATGGGCGGCACCCCAAAGGGC 27462 29 100.0 32 ............................. GCTAGGGTCTAAACGTTACTACTTTTAAGGGT 27523 29 100.0 32 ............................. CGGCTGGTGATGAGGACGAAGACGCTGAGGAA 27584 29 100.0 32 ............................. GCAAGTAACTGCACCTGGCGTGTGTTTCCCCC 27645 29 100.0 32 ............................. GACTTCCACCCCTCAAAAACCAAACGCTCATG 27706 29 100.0 32 ............................. AGCCCGCCACCGAGAAGAAAATTCAGCAGCGG 27767 29 100.0 32 ............................. CCCGCGAAGCTTCTGCCACAAAGCCTCGTCGT 27828 29 100.0 32 ............................. ATTACATGAATTGGGTTCAAGATATGGAGCGC 27889 29 100.0 33 ............................. GTAAGTGAATACCCTGAGCTATTAAGAGCAGTG 27951 29 100.0 32 ............................. TCGGTGCGGTTTTGCGCAGCGCCGCGGAGTTG 28012 29 100.0 32 ............................. CAAAGCTGCTGATCTCCGAGGAACTAATGGAT 28073 29 100.0 32 ............................. ACGGACCTTGTTTTATCTGACGGCTGGCACTG 28134 29 100.0 32 ............................. CTGCCGCGCATCCCTCACCGGATCGGGGGGTG 28195 29 100.0 32 ............................. TTTGGGTGGAATTGTCAGAGCACGCGGCGAGC 28256 29 100.0 32 ............................. TAAAGATTCCAATTTATTCTTTGCGAAATCCT 28317 29 100.0 32 ............................. CTGCGAGTCGGTGTAGGTCAGGGTTCAAAATC 28378 29 100.0 32 ............................. CCGTGGCATTAGCGTTATGCTGAATTGCTTCA 28439 29 100.0 32 ............................. GAGGACTGGTGTGCGGGGAAAATCCCTCTGCT 28500 29 100.0 32 ............................. TCGGTGGGATGAGGGACGCCATTTGCTCAAAA 28561 29 100.0 32 ............................. TTGAGGCTAAAGCCCTCTGCGAAAGCGCCTAG 28622 29 100.0 32 ............................. CACTGACTGGCCCAGCAGGGCCACGGATGATC 28683 29 100.0 32 ............................. CTAAGGATGGGTCACAGTCGTGGTGGTCGCAG 28744 29 100.0 33 ............................. CGACCCCGTACTAGCAGAACTACTCCTAGCATG 28806 29 100.0 32 ............................. TTCACGCGCACGGATGAGGCGAAAAAGCCCTA 28867 29 100.0 32 ............................. AAGCAACGATTTCAAGATCACCCTTTTGATTG 28928 29 100.0 32 ............................. GCGGATTGCCCTTCGCGCTTTCCCACTTATCG 28989 29 100.0 32 ............................. GAAGGAAAATCGCCCCTCGCCCTTTACACCTC 29050 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.7 32 GGAACTACCTCCGCGTACGCGGAGAAAAG # Left flank : CATAGGCTGGGAAACAAGCAGTCGATAAACGCTCAAAACTAAAAGAATGTTGGATGGCATCTACCGAAATAGCGCTGACCAACATTCAAAACGGAGAAGGTTTACTTCTTTTTCTTGAGTGACAGAACAAAAAGCACGATTATGATCACAAGTAAGGTAGGGATCAGAAAAGCGATACTAAAGCTGCCAATTATAGTCAGAAATTCTACCATCTACCCTCCTAGGGCTTAATCGTAATGCAAGCCCAGTTTCCTGGACCCGCACCTTGCACGTGCGCTCGTCCACAGACCCGTGAATTAGGGTCAAAATTCCTATTTACCTGAAAAGTATGGGTGGTACGGTACAGCGCGCAATTATGTCCCGAGGTCATGGCCTTGCTTTGGCCATTCTCCCGATATGTGACCTCAAATTTATCGACACAGGCATTCGTCAACTGCCCTCCCACATTATAAGCCATAGCGATGGAATTAACGTGCGTCCCCTTCCCGTTTACATATAGG # Right flank : GACTAAATAACCTGCGCGTTTACTCACTCTCTGGGCAAAAATCCTCCAAAACTTCGTCTGGAATAATTGCATCGGCTTCATCCAGGGGGTCAGCAAAACGCACGTCTTCTATTAGACCACGAGCAGAGAGGAAAAGACCATCAAGATCAACGACGGGGCGCCGTTGTTTTCCTGTTGTGCGGATTCTAAACCCTTGCTCAGCATCATATTGCGGGTGAATCAGAGTAAGAGATCCTGCTAGGTCTACGGATTGGCATTTTTCCCAAAGGTTTTCCATGACGGCTCTGGATAGAACTCCTACATAAAGACCTGCGTCTACTTCTGAAAGGAAGCGACTGAGGTAGCCGTTGAGGTGGTTCGGAAGGTTATGTCCTTGGATGACCGCAAACATTTATTTACCACCATATTGTGTGTGCCCTGGGACTTCGTGGTTTCTTCCGCCGATGAGGCGGTCGTCGGTACGCTCGGGGAGATGTGGAGTGAGGATCTCCATCATAATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAACTACCTCCGCGTACGCGGAGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 109012-108234 **** Predicted by CRISPRDetect 2.4 *** >NC_015683.1 Corynebacterium ulcerans BR-AD22, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================ ================== 109011 36 100.0 35 .................................... GGTATAAGCACGCGGGCTTGCTGGGCTGACCAGAA 108940 36 100.0 36 .................................... ATCTGCTAGGGGGAACCACTCGAGAATTTGCTTGTA 108868 36 100.0 35 .................................... TATTTCACCTGTGACACTCACTTTTTCTCCTTTTC 108797 36 100.0 60 .................................... CTAGGAGCAGAAGACACCGACTACGTCAGAGCAGTAACCCGAAAAACACCCTCATCGCAG 108701 36 100.0 38 .................................... AGGCGGACTTCGCGCTGGTGGAGGTCTACATCGCGGTA 108627 36 100.0 36 .................................... GTTCAGGAGATGAAAACGTGGACGACTGAGCAGCTG 108555 36 100.0 35 .................................... TTCGGTGGGGATGAGCAAGCTTTTCCGGTGACACC 108484 36 100.0 35 .................................... TTCGGTGGGGATGAGCAAGCTTTTCCGGTGACACC 108413 36 100.0 35 .................................... TTCGGTGGGGATGAGCAAGCTTTTCCGGTGACACC 108342 36 100.0 37 .................................... TTCATTCGTGAAGATGTGCGCTTTTTAATGCGCGTGG 108269 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================================ ================== 11 36 100.0 38 GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Left flank : AAATACGATGAGGCGGGATGATGTTCGTCGTACGATTATCGCCTACGATATTGCCCACGATAGACGTCGAAATAAGCTAGCTAAGATCTTGCAAAAATATGGCGACAGGATCCAATACAGCGTTTTTGTTGTCGATTGCAGCCCTGCAAAGCTGCTTCGGCTAAAGGATGAAATAAAACTCAGTATTAATGCTGAGGAAGATTCCGTTTTATATTGCGATCTTGGACTGCTGTCGAAAGTAGACACCACATTTACTTACGAAGGCAGAAAACAAGAGATCACTGACAATAAATTTCTGATTATCTAGCCGCAAGAAACTACCGCGAAGACCCTGCGGACTTTAAAAATCCCGGGAGGTCTTCGCGGTCACGTTTTCCCTTGTCATTGTGGTTTTCATAGAGCAACAACGATCACCCCTTTGGAAAATAACTTCATAAAAGTCGAGAACTTCGCAATAAAAGGGCAAATACCGAGGCTAAGTCAGTTAAAATGAGGGGGCT # Right flank : GACGCTGTAGGGCTGCGCGGTCCTCATCGGACGCGCTGGTGCTCGAGATCTGCGCAATGGCGCGGGCTGTTGCTAAGCTCATAGCCGTGCTTTCTCCCCAGATGGTACTGGGTGATAAGCGAGCGTCAGGTAGTTGGAGCTGCCTGGCGCTCATTCATTTTTCAATATCGCCACACACCCCTACGGAGCATGTACGCACTTCGGATACACGACTCGCATTTGCGTTGTTCAACGCCACAGAACGATCTATCCAGTCCATCGTCTAGGGCCAGCAGCTAGTACTGCTTTATTTCCGTAGACTGCCCAATATGAAAGAGAAAAAACTATCGTCCTTAGTATTCGGAAACGTTATCCTTGAATCTCAGATTTTGGGGACAACCATCCGAATATACGCTGATGACATGCGGTCTTATTCTTTTCGACCTAGCCCTTATGCCTCCCTCTCCGTCCCCTTAAACGAGTTAAAAGGGCAGCTTCAGCCTGACCACGCCGAAGCTCTC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 3 2018736-2020719 **** Predicted by CRISPRDetect 2.4 *** >NC_015683.1 Corynebacterium ulcerans BR-AD22, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2018736 29 96.6 32 ............................G AGTTTGTGGGGGCTGCGTTTCGTGAGGCCCCT 2018797 29 100.0 32 ............................. TTCATCCGAGGGGGCTCACCATCGCGCATGAA 2018858 29 100.0 32 ............................. GGGCCTACGGCTTTGCGTCTGGCCCAGATGAT 2018919 29 100.0 33 ............................. CTCCCTGCTCTACGACATCGGGCATATCCCCGG 2018981 29 100.0 32 ............................. TGCTCGCTCGTGGCCACCCTTACCGCGCACTC 2019042 29 100.0 32 ............................. GAGCAGCCACGGTTTATATCTCGCTCCGATGG 2019103 29 100.0 32 ............................. AAGGTTTTTCACGGTTTCGGAATCCGCCATTT 2019164 29 100.0 32 ............................. GACTCCGCATCCTCCGGAGCAGGCAATGCAGC 2019225 29 100.0 32 ............................. TTCACCATTCTGATGCCGGTTTTCGCGGTTTG 2019286 29 100.0 32 ............................. AGTGTTTTCTAGGATGAAAATGACCTACCATA 2019347 29 100.0 32 ............................. CGCTGCGCTCGGCTACAATGCTGGCGCTAGCG 2019408 29 100.0 32 ............................. GCCCCTGACTATCTCAGGGCATGGAAGGCATG 2019469 29 100.0 32 ............................. AAAGCTCCAGCCAAGAAAGGTATGCCAGTAGA 2019530 29 100.0 32 ............................. AGGTTCCCAAATCTTTTATTGTTCCTGATTTA 2019591 29 100.0 33 ............................. CCCATGCACAGTGACGGGGTGGATAAAAAAAGA 2019653 29 100.0 32 ............................. TCGTGTGTTTCTTTGCGGTTGTCCAAGAAAAT 2019714 29 100.0 32 ............................. AGAATCTATTCCCCTTCTTGGGCGAAGTTTGT 2019775 29 100.0 32 ............................. ATCTGGGGCAACTGCTTTGATGTGGAAATCAG 2019836 29 100.0 32 ............................. TCCCCGTGAGATCGAGCGAGCTTGTTTAAAAA 2019897 29 100.0 32 ............................. CGCCCAACCCCACTCCTCACGGACCGTGGGGC 2019958 29 100.0 32 ............................. ACAAAACATAACCCGCATCACACAGGCGGGAA 2020019 29 100.0 32 ............................. TCGCTGAGCGGGTGAAATCCGGTGGCACGCTG 2020080 29 100.0 32 ............................. CATCACCCCCGAACTCGCACAATACGCATTCG 2020141 29 100.0 32 ............................. CTGCAAAACCCAACCAGCAACCGCCGCCAGTG 2020202 29 100.0 32 ............................. CCTGCTCGGGCACAAAGAATATTCCGGCGCTG 2020263 29 100.0 32 ............................. AGCAAATTAGGGGCAATCCGGGACCTCTACCC 2020324 29 100.0 32 ............................. GATTTATTTGGTGAGGGAGTGATGCGCAGTGA 2020385 29 100.0 32 ............................. ATTGAGGCTTATGGTAGGCATCTGACTGCGGG 2020446 29 100.0 32 ............................. TCTCTACACATGGTGTAACGGGCCAATGCACA 2020507 29 100.0 32 ............................. ACCCGGTGCGTGGGCAAAACCCCGCCCCGTCG 2020568 29 100.0 32 ............................. CTACAAACTTTTCTGCAAACGCCACCTCCTCA 2020629 29 100.0 32 ............................. ATCATTGCCCAGCTCACGAGCACGCTCGGCGG 2020690 29 82.8 0 ....................A...AGC.T | A [2020709] ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.4 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : CGAACACCGCCAGCCCGAGAAACCCCCGAAACTGCGACTGCTCAACATCAAGGATCTGCACGCCATTAGCAGCTAACACTCGGAAAGCTGCTGCCGACACTCCCTGTCGATCCTGGCCTGAAATAGTAATAACAGCCGGGGTCAGCTCTGGGCGAAGGCTAACAGTTACTTGAGGCTGGTCCAGTTCAATCACCGATCTATTGTCGCACGAAGCCTTTCAAATCCTCCCAGTGCTCCCCTATTTAGGAATGACGGGCTCCGCATCAACGAATGCGCACTTGCTCCCCATCCTATGGGGCAAAGTACCTTTCCTTCGGTCTTGTGGTTTTACACCTTCTTGCGGATCCTGCGGGGGTGTGCAATAGTCTTTCCCGCTTTTGTCATGGTCTAATAAGGAAGGCTAGTTTTCGCACCGATTGTATGGAGTTAATGTGCTGATTCCAGACGCAGTTTGGACTGTTTTTGACTTCTTTGGTGATTAAACACGCAGGTAAGTTAGT # Right flank : TACAAAAACCTATCATCAGCCTTGATGAACTTTTTAGACGTCGAAGACCACAGAAGAAAACAACAAGTTGATCCGGTTTTCCAGCCACTGGCAAGACCTCAGGAGTAATTCACCACGTTGCTATCGCGACAGCAATCAAGAGGAAGAGCGAAGACATGAATACGTACCAGAAAATAAAGGAAAAGACAGGAGGAAAAATCTATCTCGGAGTAGGACTACAACCAGGCAATCAAGACGAAATAGCTATCGAAGCCTGCTACATAGAAGCACTTATTGACTATGGCTATCTCGATGTAGAACTAAAGAAAGAATTTCTAAAATTATGGCTCACTGATGATATGTACGATGATCTGAGCGATCTTGACTCAATAGAACTGAAAACATATCGTAACCTACTAAAATATGCAGGCATGCAGCCTCGTGTAGATACGTCTGTCTTCCGCCCTGAGCCCGCATAAAACTACATCGTTTAATCAATACATCAGTAACAAGTTTTCTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //