Array 1 68687-69813 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGWU01000011.1 Proteus hauseri strain JCM 1668 Scaffold10_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 68687 29 100.0 32 ............................. AAATTGGCTGTAAATGGTCGCCAAAAAAATTA 68748 29 100.0 32 ............................. GTGAGCCGAAAATCAGAAATATTGGGCAATCT 68809 29 100.0 32 ............................. GTCTACGTTGGCGAGACACTCCGCCCCCCTGT 68870 29 100.0 32 ............................. ATAATTTATTTTGTAAAAATAAACATGGGATA 68931 29 100.0 32 ............................. TGAATATAGATTTCATTCGCTTGAGATATTCG 68992 29 100.0 32 ............................. AAGAAATGAAGCGACAAGCTGCGGAACAGGCA 69053 29 100.0 32 ............................. TCACTGCCCCGTTTTTTCAGCCACAATTCCAC 69114 29 100.0 32 ............................. GTGGTAAATGCACACTTTCTGATGTGCTTTTA 69175 29 100.0 32 ............................. GGAATTGGCAGGATTTACTCAGTCATGAATCG 69236 29 100.0 32 ............................. AAATTTCATACTTTACGTGGGTTTGATGATCT 69297 29 100.0 32 ............................. TAATGTTGCGATATAACCCGCCCACGAATGCA 69358 29 100.0 32 ............................. CCAAAATAGATGGTCCTGTTGCACTATTTACA 69419 29 100.0 32 ............................. AATATAGGTGTTGATGATCTTAATTTCCCAAT 69480 29 100.0 32 ............................. CACTAACGTAACGTTGGTTAGTAATAAACGAA 69541 29 100.0 32 ............................. TTCATATTGCTTGTACTTAATTGGAATCCATA 69602 29 96.6 32 .............A............... GTGACCATATATGATTTACGACAGTTTTCTAT 69663 29 96.6 32 .............A............... TCGGATTAAGAAGGCTGATAGCACTGTAAAAC 69724 29 93.1 32 .............A............T.. CGGATCACTTTTTTAACAGCAATAATTTTTAG 69785 29 69.0 0 ..A.....T....AT.......C..TTAA | ========== ====== ====== ====== ============================= ================================ ================== 19 29 97.6 32 GTGTTCCCCGTATGCACGGGGATAAACCG # Left flank : AGTTCCTAATGCCAAACCAGCCTTAGATTGCCCAGTTGTTTTCCCTTATGCACCAAACGCCGTATTAGTTGGTTTTTTAAGTAGTTTTGCGGCAGGTGTAATTGGCATGTTTGTGCTTTATCTGTTGGATTGGACTGTTATTATTCCGGGTGTTGTTCCGCATTTCTTTGTGGGTGCAACAGCAGGGGTATTTGGTAATGCAACGGGTGGACGTCGTGGTGCAATATTAGGTGCTTTTGCTCAAGGTTTATTAATTACTTTCTTACCTGTATTCCTATTGCCAGTACTTGGTGATATAGGGATCGCGAATACAACATTTAGTGATGCTGACTTTGGTGTTATTGGCATTCTATTAGGTATTATTGTTCGTTAATTTTTTCCAGCTTTAAACTAAACTAAACGCCTTACTTGGTTTAATTAAGTAAGGCGTTTTTATCTATTTTTTTGGTAAAAAAGAGAAGGTTAAATTTCTTTTTTATATTCAATCTATTATGATTAGA # Right flank : AATTGTTACACAATATAATTATATTAAGTGTTTTTTAACAAAATAATCACATCCAGAAGGTTTTTGGGCTATACATAAACTGAGTTCTAAAAATATAAACAGGGGAAGATCTAATTTTAAGTATTAAATTAAGAAAATAGTTGCTATTCATTATAGACTTTAAATTATAAAAATTAGTGATTAGGTAGATATGAATACAGACTATTATAATTATTGGGGTAAATTTAAATCAGATAATAATAATGAATATTATCACTTACTTCCTTATCATAGTCTCGATGTGGCTGCTGTTGGTGCAATATTATTTTCAGCAGATACAAAGATAGTAAAAGATATTGCTAATTTTTTGCAGATTAGCCCCAAAAGCTTTTCTAAATTATTTTTATTAATACTTTCTCTTCATGATATCGGTAAGTTTTCATCGTCATTTCAATATATTAATCAAAATATCATCGATAAAAACCAAGTTCCTGAAAGTAGATTTTCTTACGATGGAAAAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 78636-79454 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGWU01000011.1 Proteus hauseri strain JCM 1668 Scaffold10_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 78636 26 100.0 35 .......................... CCGCATACTGACTAATTTTTTCACATAAATGATGA 78697 26 100.0 35 .......................... CCGTTATCGAGGTCTCTTTGTCGTTTATCTGGTGG 78758 26 100.0 35 .......................... CCGTAGGTTTGATGGGCTTCAATGCTTGATGGTGT 78819 26 100.0 35 .......................... CCGTACCAGAACCATCATAAAATGTTGTGGTATAT 78880 26 100.0 35 .......................... CCGAAGAATACGACAACATCATGAAGCAAGATGAT 78941 26 100.0 35 .......................... CCTGATGGTTTACGGATTGTGAGAGAGATACAACC 79002 26 100.0 35 .......................... CCGCACGTGCTCGTGGCATTCCAACAATGGGTAGT 79063 26 100.0 35 .......................... CCGATACTGACCAGGACGTTTATTACCCCCGTAAT 79124 26 100.0 35 .......................... CCGGTCTACCACCAAATAATCTTTTGGCTTCATCA 79185 26 100.0 35 .......................... CCGTTTTAACCTCGATAGTTCAGCCATATTTTCTA 79246 26 100.0 35 .......................... CCGCTCTGGTCTGTTTGCTGTGCTGATAGCCCTTG 79307 26 100.0 35 .......................... CCGAAACAGTTTCTATCGTTGGTGACTACCGCATT 79368 26 100.0 35 .......................... CCGGGTATTTCTTGATCATCCCAATCTTGAGGCGG 79429 26 96.2 0 ..............T........... | ========== ====== ====== ====== ========================== =================================== ================== 14 26 99.7 35 GTGTTCCCCGTATACACGGGGATAAA # Left flank : AACATTAAATAAGCTGATCCCTTTAATCGAAGAGATTCTTTCGGCTGGAGAAATTTTTCCTCCGGAGCCACCTTCCGATGCTCAACCTCCTGCAATTCCCCAAGCGCGGCCTTTTGGTGATGAAGGCCATAGAGAAAAATAGCAATGAGTATGATTGTGGTTGTAACTGAATCTGTACCTCCTCGATTACGAGGGCGATTAGCGGTGTGGTTATTAGAAGTTAGGGCTGGTGTTTATATAGGTCATGTTTCCTCACGAATAAGAGAAATGATTTGGCAAAAAAATCAATGAGTTAGCTGAAAATGGTAATGTAGTTATGGCATGGGGAACAAATACTGAATCAGGCTTTGATTTTCAAACATATGGAGAAAATCGCCGTGAACCTGTTGACTTTGATGGCTTAAGATTAGTGTTATTTAAACCGCTAGAAGATGATGAATAATAGTTGGTAGAAATAAAAATGTTTTTTTATTTATTTAAATCAATCGGATATATTTAGA # Right flank : ACCACATTTATATAGAAATCAAAATTAGAGATATCCTTTTCTCATTAAGTCCTATTTTCTTTCCTTGGTTACTTACAACCCTTATCTCCATTTTTTGTCATTGATAGCTTAATTTAATATCTAGAGCTGATAATGAAAAACTAACTAATTATTCTAATAAAATTACGATAAATCCATTTATGTCTTGTTTTTTAAAGAAATAGACACATTTATTTTAAAAAAGTAACAAGTGAATTTATATGTTTATTTTATGAATAAAAATACTTATTATTCTTGGTGAATATTCACTGTGTGTATATTTTCGTGCCTAATTAATTACAACAAAATAATTGGTTCAAGGTTTTACATCACAATCACTAAGGAAAAATAAGATGTCTTTTGGTTTACGATATCTTGCGTTGGTACCTCTTTTGGTTATCACTGCTTGCCAACAACCTATTAATCACAATCCATCTGTAACACAAACAGCGCAGGTTCAACCTGTGATTGTTAATAACTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATACACGGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //