Array 1 1367449-1367115 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCR010000001.1 Kocuria palustris strain TAGA27 Ga0451124_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1367448 29 96.6 32 ............................T GCACCTACCGACCCGAAGCCGACGACACCCAG 1367387 29 96.6 32 ............................G GCGTGGCACGTCCTGCAGAGCGAAGGCAGCGT 1367326 29 100.0 32 ............................. CTCGCAGGCGGGCTGCTCCGCTACGGCGACGG 1367265 29 100.0 32 ............................. ATCGAGCTCATGTCGGCGCCGAGCGTAATCAT 1367204 29 100.0 32 ............................. CGGTCTCTGTACACGAACACGCTGGGGCCGTT 1367143 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : ACTCCTTGTCCATCTGGTCAGGGCGCGGAGAGCAGCGCGCTACCGCCGGGCGCAATTACGACGGGAGCGATCCGTGATGGTCCTGGTCCTCTCCGCGTGTCCGGTGGGGTTGCGCGGTGATCTCACGAAGTGGCTCTACGAAGTATCCGCGGGCGTGTTCATCGGAACGGTTTCCGCTCGAGTCCGCGAGGAGCTTTGGGAGCGGACCAAAGACACCTCGGGCAGTGGTCGTGCGATTCTCATCTGGTCCGCGCCGGGCGAGCAGAAGCTGCGGTTCGAGGTGCATCGGCATCATTGGACCCCGGTGGACCTGGATGGACTCACCCTCATGCGGCGCCCTGCTGCACCAGGCGCATCGGTGGGCGGAGCCATGCGAAAGGGGTGGAGTCAGGCCGGGGGCGCGCTGCGCGGACGTCAGTTCCAGCGCAGAAGACGCGGAAGCAAATCTGCCGAGTCGAATTGATTCCGCGGTCGTGCCCATCATCACTCCTAGTCAGGAA # Right flank : TGCAAGGTCTCGCAATGCCTAGGGCATGTCTCCTTTATCGGCGTAGCCATGTCAGGATCGCGCTGATCACGACCGCCGCCCGATAGGTGATCGCGAGCTTGTCGTAGCGCGTTGCTAATCCTCGCCACTGTTTGACGTAGGCAAACGAGCGTTCCACGACGTTGCGGTTCCGATAGGCACCAGCATCGAACGTCGGCGGCCGTCCACCCTTACTCCCGCGTCTCTTTCGGCTCCTGACCTGGTCCTTCTTCTCCGGGATCACTGCCCGAATGCCTCGCGATCGCAGGTACTCGCGATTCGCCCTGGACCCATAAGCACGATCAGCGAGAACGGTATCCGGACGAGTGCGAGAGCGACCGCCACCAGCCCGCGGCACTCGAATATCGGCAAGGACCTGCGGCAGGATCACCCCGTCGTGGCGCTGTCCACCGGTGACCACCACTGCCAGGGGGCGGCCATTGCCGTCGACGGCATGATGGATCTTCGTCGTCAGCCCACCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1378865-1376825 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBCR010000001.1 Kocuria palustris strain TAGA27 Ga0451124_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================= ================== 1378864 28 100.0 33 ............................ GGCGCAGGACGCCTACAATGCCGCCTCCGCGTC 1378803 28 100.0 33 ............................ GAGACTTGTTTGCAAGTCTGAGCCTGGTATAGA 1378742 28 100.0 33 ............................ GCCTGAGCACCGTCACCCCGTGACGACGTGACG 1378681 28 100.0 33 ............................ CTCGATCCGATCCTGCCGATCGGAAGGCTGGAT 1378620 28 100.0 33 ............................ CATCGCCGTGTCCATCTGGCGCGGCATCGGAGA 1378559 28 100.0 33 ............................ CGGGCAGGTCAACGCGCCCACGAAGGCCACCGT 1378498 28 100.0 33 ............................ GCCCGATCTGCCCGATCATCGCCGACCACTCTT 1378437 28 100.0 33 ............................ GTCAGTGGCGCTGTCAGCGATGGCCAGCAGCAC 1378376 28 100.0 33 ............................ CGGGCCGCGCTCCATCGCAGTGACCCACTGGCA 1378315 28 100.0 33 ............................ GGAGGACGCGCTGGACCTGCCCAAGACCACGGA 1378254 28 100.0 33 ............................ CTTCCAGAACTCGTCAAACGTCACCAGGTCAGG 1378193 28 100.0 33 ............................ CCGGGTGAATGCAAGCCACTCCTGTTCCACGTT 1378132 28 100.0 33 ............................ GGTGCCGCGAGCGCGGTGGGGGTTTCAGATGAT 1378071 28 100.0 33 ............................ CAGGGCTCGGGGATTGCGCTGGTGGGGTCGGGC 1378010 28 100.0 33 ............................ CCGGCGGGTGGCCGGCAGCTCGAAGATCGGGGT 1377949 28 100.0 33 ............................ TGGTCTCAGTCCACGTCGCATAGCGCGAGTTCT 1377888 28 100.0 33 ............................ CGTGGGTGACACCCCGAACCAGACGCTGTCCTA 1377827 28 100.0 33 ............................ CTACGCCGCGAACGGACACACCGCGGCGGACGC 1377766 28 100.0 33 ............................ CAAGACCCAGAACTCGCGCTATGCGACGTGGAC 1377705 28 100.0 33 ............................ GGGCCGGGGATCGGCGGCGCGTGCGGCGGCGTT 1377644 28 100.0 33 ............................ TCGCCCGCCTGGACTGCGAGGCTCCCCTATAGG 1377583 28 100.0 33 ............................ GCCAGGCCGGTACATTCCTTTCGCAAATCCGCG 1377522 28 100.0 33 ............................ CCTTGCTGACAAGGTTCAGGAGGAGTCGGGCGT 1377461 28 100.0 33 ............................ GGCACGCGCGCCGCCGGAGGCAGCCTCGGCCAT 1377400 28 92.9 33 ............A.............T. GGGGCCGCTATGGGCCGTGCCGGATCGCGTGGG 1377339 28 96.4 31 ........T................... GCAGCCGGACCAGGTGCTCCAATGAGCAGTG 1377280 28 96.4 33 ..............A............. CTGGCTGCCGGTGTCCCGGCAGGCGCTGTCCGA 1377219 28 100.0 34 ............................ CGGACTCGGGGGTGCGGGTCGCCGCCGCGTACTC 1377157 28 100.0 33 ............................ CCGTGATGGCTTGCAGCTACACCAGCTGGGAGA 1377096 28 100.0 33 ............................ GGTGCTGTATGCGGGCGCGGAAACCCGGCTGGG 1377035 28 78.6 93 ...............CT.....G.G.GT GGGTGCCCTTGCGACGCCGTGCCTGAACCTGGCGTCTGCCGCTGATATGGGGATGAGTCCGACCCGTAATGAGCGCTACCGTTCTAGTGGCAA 1376914 28 75.0 33 A.TT....T....GC......G...... GTATTAGGCTACGAGGCCTTTGGCGCCTTGATC 1376853 28 85.7 0 TG.......................A.G | G [1376828] ========== ====== ====== ====== ============================ ============================================================================================= ================== 33 28 97.7 35 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGGTGATGAACGGCTACCGCCTGCTGGTGCTCCTGTCCGTGATGGTCGGCTCGGTGGTCGCCCTGGACCTCGTGTGGTCTCTAGCCGACGTGATGATGGCGATCATGGCCACGATCAACCTGATCGCCCTGATCCTCCTGGCGCCCATCGCTGTCAAGGTGATGAAGAACTACGAGGCCCAGCGCCGCCGCGGCGAGGAGCCCACCTTCAACGGCTCCGACATCCCGGGCTTCACCGGGCTGGACGCCTGGGACGGCACCGACGTGATCACCACCGGGGCGTTCTGGACCCAGCAGATGAAGCGCGTGGGCAAGGCCTGATCCGCTTCCGCCGCTGAACGACGACGCAGCCCTCCTCCCAGCCATAGCGGCGGGGAGGAGGGCTGTCTCGTTGCGTGCAGCCCTAATGCTCGATGAAGCATTGATCTGACCGCAGGGCCCGAATCTCTCGAACTGAAGGAGAATCGGGTCCGCGGCTGGAATCGTCCCATGTCAGGAAGT # Right flank : CGACACTGAACTCCGCTGCCGGTCGGACGGGACCTGACGCATCTCGCCGCGGCGAGGCGTGCCGATTTCGTCTACGAATAATGCATGATCATTGTCAGAGGCGACTCCTAACGAAGGCGCTGCCGACTCGACGATGAGGGCATCCATGGACCTGCCGGAGGATGTGTGGCGGCTCTGGGGCAAGACGCCAGGACTGGCTCCAGGGGCAGACGCTGAGGGAACGTGGCTGGCGCTGCATCAGCATCTGCGGGATTCGGCGGACGTCGGCATGGAGCTGGCTGACCGCTGGTTGTCGAACGCCCTCTTCCAGAGGTTGAACCGGATTGCCGATGGCGAGGTCCAGGAGCTCGTCGGATTCCTTGCGGGAACGCATGATCTGGGCAAGGCGCAGCTGAGATTCCAGGCCCAGGTCCGTGATTCTCCACTTGATGAGCGATGGCGACACGTCCAGGGGATGCGGGCCATGCCGGATCTGGCATTGGATGATCGCATCGAACGAG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //