Array 1 6515-7381 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAEKIR010000010.1 Actinobacillus pleuropneumoniae strain 1140 1140_R1_(paired)_contig_10, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
      6515	    28	 100.0	    32	............................	CAGGTGCTTTAGTTGTTTTTGAGGGTGGTAAA	
      6575	    28	 100.0	    32	............................	TTGTGCCTTGGCGGATTGCTCAAGCGTTTGCA	
      6635	    28	 100.0	    32	............................	AAAGATAAAAACGGGATAGTAAGCGTAACAAC	
      6695	    28	 100.0	    32	............................	TAGCGATAAAATACATCAAAACCATCGTTCAT	
      6755	    28	 100.0	    32	............................	CTGTTCCCTTGCAAATTGTATGCCTGCTTTAG	
      6815	    28	 100.0	    32	............................	TTATGCTGATAAAATGACTCTTAAAGAAATAA	
      6875	    28	 100.0	    32	............................	ATTTAAAGGGGCAGAAAATACATTTTGTAAGG	
      6935	    28	  96.4	    32	.................T..........	GTTAGCGTCTTCTTTATCCCCTTCTCCTTTGC	
      6995	    28	 100.0	    32	............................	ACAATAAATCAATCGCTCTACAATATCTTGCA	
      7055	    28	 100.0	    32	............................	CGGTTTGTTGCTAAATCAGGTGGCGGAAAGCG	
      7115	    28	 100.0	    32	............................	TCCAAGCAGTAAATAATTAGCGCCATCTATCC	
      7175	    28	 100.0	    32	............................	CTTACGGGTTGGCTACGCCAAACCTTGACAAT	
      7235	    28	 100.0	    32	............................	TATCCGATAACCTCTTCCTTAGTTTTGCCACT	
      7295	    28	 100.0	    32	............................	TTGCCAATATCGCAAAATACGTTAAAGATCCC	
      7355	    27	  89.3	     0	.....................-C.C...	|                               	
==========	======	======	======	============================	================================	==================
        15	    28	  99.0	    32	CTTCACTGCCGTATAGGCAGCTTAGAAA	                                	       

# Left flank :   TAAAAGTGCAATTAACTGCAGAGGGCTTACAAGACTATGCTCTTATTACATCGGTAACCCCTATTCCGGAAGAGATAGCCGAGCATCGCCGTTACCAAAGAGTGCATAGAAAAGGTCAAAGTGCTATTCGCCGTACCGAGAAATTCTTAGTTCAACAAGGAAAATGGACTGAAGAAATTCGCCAAGAGATGTTAATACATCAGCAGAATCAAAAAGTATTTCCGTACGTAAAACTCAAGAGTGGTAGCACTAAACAGCATTTTGTATTAGCGATACGACAGCTTCGTTTAGCAGAGCCTGTTTCCGGCCTATTTAACGCATATGGATTAAGCAAAATAGCAACCGTCCCACATTTCTAACCTCTTTTATAACCTTTTTTTCAAGAGAATTTATTTTTCCTTTAGAAACAAAGGGTTATAAAAATCTTTCAAAAAAGGGATTTTTTGATTAAAAGCTCTTTAACAACTTGGTATATCTAACATTCTAAAGTAAAATAACGA
# Right flank :  ATCAACTGTATTCCATAAATAACATCGGAGAAAATAATATGAAAAAAACACCTTATATTCCGTCTTCGGATTTAAAGACGATTTTACATTCTAAGCGGGCGAATATTTATTACTTAGAACACTGCCGAATATTATTAAACGGCGGGCGTGTAGAATATGTTACTGATAAAGGCAATGAATCACTCTATTGGAATATTCCTATTGCCAATACCATCTGTTTACTATTGGGAAGTGGTACTTCGATAACTCAAGCGGCAATGCGAGAGTTATCAAAAGCAGGGGTTATGGTCGGTTTCTGTAGTGGTGGAGGAACACCGCTATTTAATGGGACGGAAGCGGAAATCGGTTGTGATTTTTTTAGCCCTCAAAGTGAATATCGTCCGGTCGAATATCTACAACAATGGTGTCGATTTTGGTTTGATGATAACAAGCGGTTAAATTCGGCAAAAACTTTACAATTGGCACGGTTACAATTACTACTTCGAACTTGGAATAAGTTT

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTTCACTGCCGTATAGGCAGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:53.57%AT]
# 	Reference repeat match prediction:         F [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-8.00,-7.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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