Array 1 158769-160443 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038158.1 Clostridium tyrobutyricum strain Cirm BIA 2237 chromosome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 158769 30 100.0 34 .............................. CAAAGTATAAGAAGTAAAAGAACTGCTTTGAAAA 158833 30 100.0 34 .............................. GCTGGAAGAATGGAGATTCAATTGTAGACTTTTT 158897 30 100.0 35 .............................. CCTATGATTTTAGCAATTGTATTCATGCGGTAGAG 158962 30 100.0 36 .............................. CTTTCCCCTTCTTCGTCTGTAGATGAAATTTGATAC 159028 30 100.0 36 .............................. ATTAAAGCTAAATGACAAAGTTATATGTATTGCAGA 159094 30 100.0 36 .............................. AAAAGAAATATTCTTAAATATAATCAAAGAAATTAA 159160 30 100.0 37 .............................. TAAGATAATGTTTCGAGTGGGTCGTAATCTGTAAATG 159227 30 100.0 34 .............................. ATGTCTTATATAGTTCTTCTGCTTGCTGATTATT 159291 30 100.0 36 .............................. GCTTCTACTATTTCAATATACTTTTCATCATTTTCA 159357 30 100.0 36 .............................. TTTAAAATTAACAGATATTAAATACAAACTACAAGA 159423 30 100.0 36 .............................. ATTAAACCCAAAGCAAAAATTTATATTACCTGACGA 159489 30 100.0 37 .............................. TAGAGCTAACACAAAATGAGTTAACAGAATTTATAAA 159556 30 100.0 36 .............................. ATCTGCATCCACTATGTCAGATACCAAGATATCAGA 159622 30 100.0 36 .............................. ATGCTATCTCTCCTGCCGTATCAAAGTTATTGTCAT 159688 30 100.0 37 .............................. CTGGATTTTCTCTGTTTTTAAATTCCATTGCCATTCC 159755 30 100.0 36 .............................. TTGTACTTAAATTATTTATTTGTTCGTTCATTACGC 159821 30 100.0 36 .............................. ATTGGCTTTGCTTGTGGAACTAGGAGAACTTGCAAA 159887 30 100.0 36 .............................. ATTCAAACAAAGGAGTGAGTAAATGGACAAATACTG 159953 30 100.0 36 .............................. GGAAGATTTACCACCATTGTCGGAAGGATTTATTTA 160019 30 100.0 36 .............................. TGGATTGAGTTTGGAAAATCAATTGCATCAAGTCAG 160085 30 100.0 36 .............................. AACAGAAGACACAGGAGAAAGTTACACTTGTGTTTT 160151 30 100.0 36 .............................. TAGGAAAGCAGTATAAAAATGACAAGCTGATAAATA 160217 30 100.0 35 .............................. ACAAATATCCAATTATAGAGAAATAGCTAAACGTA 160282 30 100.0 36 .............................. ATATAATAGCATACATTATAATTAAAGACAGAATAT 160348 30 100.0 36 .............................. TAGATTAATTTCTAAGTCCTTTTTTAGTTTAAATTT 160414 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 26 30 100.0 36 ATTTAAATACATCTCATGTTAAGGTTCAAT # Left flank : AAATTTTGATAGTATATTATTCCACATTAAAGATTATTGTAGAGGGGATTGAGTTGATATTTATATAATAGATGAAAATAGCTATGAAGAACTTGTAAAATATAAATTTTTTCTTTATTCCTCATGGAGAGTTGGAGAAGCCAAAAGCTTTTATAGCATAATGGATTTGAGGTAGAAATACTCAAATTTTACTATCTTTTTCAATATTCGATTAAAAGTTTCAATTATTTCCCGAAAAATAGATTTCTTGTACTTTTAATATAAAAAAATATATATAAAGACTACGAAAAATAATTGATGATCATGAACTTCAATCTATAGGATATATAAAGGTATCAGGTGGAATGTGTTTTGAAATGAAAAGATATCTGAAATACTTTACTTCGTACAAATATAAATTTTATGTAAACAATTCAAAAAAATATACGACTATATTTATTCAATTGATTTTTGTCTAGTTTCAATGCCAATAGCAATGCACGGAGTGCAATTACAGAGTT # Right flank : TCACAGTAAAAGAGCCATTCTCTAAATTCATTATAACTCCCAAACCATTGAAAATAAAGCCATCTAATAAAATTTTTCCAACCATTTTGTATTATCTAACTTTAGAATTAAGAAAGATTACAAATATACTTATATCAATGTCTTATAGCATATTTAAAAGTAATTGAGGTTGGAAAAATTATTTATCTATATTATTAAAATTCAACTATATCTATTTCTGTGAAATATGCAATGGTATTAAAGGATGGCCTAAGGCCTTTTCTATTTCAAAAACAATAATAAAAGTAATAACACTTACAACTGATCCCACAATAACAGCCATAATTCCAAAAGGTTCATTGAGATATTGCCACCAGAATCCAGCAATACTTCCAAGAATTATAGACAGTATACCAGCATGCTTTGTAACATTTTTCCATGTCAAACCAAAGATGAATGCTGCAAAAGGACCAGCTGACCTCATGGTGAAGGCAAATACAAGCATAGGTATAATCTGTTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAAGGTTCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 698509-701099 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038158.1 Clostridium tyrobutyricum strain Cirm BIA 2237 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 698509 30 100.0 36 .............................. AGCTCAATTTAAGGGATTAGTTGGAAAAGGTGAAAA 698575 30 100.0 36 .............................. TTATTATGCTTAATCCTCTGAGCATATCTGTATTTC 698641 30 100.0 35 .............................. TATATAGATGCTTTAGATAAAAAGATTTTTTACAT 698706 30 100.0 37 .............................. TGAGTTCCAGCATGGTCATTAACTACCGATTGTTTTA 698773 30 100.0 34 .............................. TTAATTACTTTTAAAATAGAATATCCATTCCCAG 698837 30 100.0 36 .............................. CAGATAAAAGATGATCCCGATGGCTCCAAGAGAAAA 698903 30 100.0 37 .............................. GGATAAGTCATATTATCTACATTTATTTTTTCTTGCA 698970 30 100.0 36 .............................. TCACCGACACCTTTTAAAGCCTTTTGACTTCTCTCA 699036 30 100.0 34 .............................. ACAGCTACATCTTGTTTACAGTATTTTTTAAAAA 699100 30 100.0 37 .............................. AAAACTTATGCCTAATGCAGTTAATATTTTATCTCTT 699167 30 100.0 35 .............................. TTATATATGGCTTCGGGCACATTTGAAGGATACAT 699232 30 100.0 36 .............................. TCATCTCCTAAAATGCAAATTTACTTAATGAAGTTT 699298 30 100.0 34 .............................. ATTTAGTGGGTACTATAGCCAAAATTGCAATAAA 699362 30 100.0 36 .............................. AATGTAGTAGATACATCAGATGCAACAGCTCTAGCA 699428 30 100.0 37 .............................. CAGTTTCCATAGTATGTAGACATAAAATCTTCGTACG 699495 30 100.0 36 .............................. GGATAACTAACCCCGTCTGAACACTTTGGACAACTA 699561 30 100.0 36 .............................. GGGTAAGTTAATGGCAAGCCCTTCAAATGCAAAGAC 699627 30 100.0 38 .............................. ATTCTATTGGTAATCAAGAATTATTGCCTAATGATAGT 699695 30 100.0 36 .............................. GAAAATATGAAAAACGCATTAAACATGAATTCTATT 699761 30 100.0 35 .............................. AATTAAATGCAGCAATGATGAAAACAGCATCTTCG 699826 30 100.0 36 .............................. ATATAATTAACAATGATAACGAGAAAGAGTATTCGA 699892 30 100.0 36 .............................. TAGGTGGCTTTTAAAGTATTTATTGCGTCTAAAATA 699958 30 100.0 35 .............................. GATATAGATGTTGAAATGTCAACAGATTATAAATT 700023 30 100.0 36 .............................. ATGGGATGTCTTTTATTTTTTGGGTAAGCGATGAAG 700089 30 100.0 35 .............................. CTCAAAAGGTTAATAAGAAACAATACAATAGCTAT 700154 30 100.0 36 .............................. ATATCACTAGAACTAGTAAAACAGATAGAAAGGGTA 700220 30 100.0 36 .............................. CCACCAGTGAAGTCCACAAACTCCCAACCTCTTTCA 700286 30 100.0 36 .............................. GACTTGTATTTACTCACACAATCACTTCTTTCAGCT 700352 30 100.0 35 .............................. CTGGCAGCACAGTAAATACAATCTGCGTCACTTAG 700417 30 100.0 35 .............................. TAATTTTATCCTTCTCTTGGATTTCTTTTTGGCAG 700482 30 96.7 36 ......T....................... GTTGCCATGGATGCTCCACAAGGGCCTAAGTACCCA 700548 30 100.0 36 .............................. GAATTGAATGAAATAGAAGGGCAGGAATATCAAGGA 700614 30 100.0 37 .............................. ACGTATACCATATCTTTTATGGCAAAAGGGGCTTTTA 700681 30 100.0 34 .............................. AAGGTACTTCTTAATTGAGGTACCTTTTTAATAT 700745 30 100.0 36 .............................. TAATTTTATCCTTCTTTTAGATTTCTTTCTTGAAGG 700811 30 96.7 34 .................T............ ATATCTGGCTTTTTATCTGGAAGCAATGCACCTT 700875 30 100.0 35 .............................. AAGTTTAATGTCAAAAGATATATTCAAAGCTTTAG 700940 30 100.0 34 .............................. TTGGCGGTAATTGTGTGCGAGGCTATTTTATCTG 701004 30 100.0 36 .............................. TTTATTCTTGCAAGACCTGGAGAAGCACTTTCTGTA 701070 30 96.7 0 .................T............ | ========== ====== ====== ====== ============================== ====================================== ================== 40 30 99.8 36 GTTGAACCTTAACATGAGATGTATTTAAAT # Left flank : ATTTAGTTTGAAAAATATGATATAGTATGGAGGATTTTAATGGGAAAAAATTTTAATTTTAATTATGCTTTTGTATTTTATGATGTAAATGAAAAAAGAGTAAATAAGATATTTAAAATATGTAAAAAGTATTTCCACCATCATCAAAATTCTGTTTTTAGAGGATCTATAACTCCATCTAAATTAATAAAATTAAAAAGTGAATTAAATAAGATCGTAGCAGATAAGGATTTTGTCACAATCATAAAACTTATAAATGATAGTTGCTTTGAAGAGGAAACTTTAGGTATAAATGATAAAAATACTGAAAACTTGATACTTTGAATTTTCCAACCTGTTTTCTATTTAGAATCACTTCAATTTATTTAGAATCAATGGGTTACGTTATTTCTTATAAAATATATGCATAATAAAAATTGGTTGGAAAAAATTCAGCGAAAACCTTTATTTATATGCTTTCAAAGCTTATAATGAAATTAAAGAATGGCTATTTTACACAG # Right flank : TCCCATAGAAGCTCTATACTTGCCCATATATTAACTGTTGGACCTTAAAATTTTTGAAAATATTAAAATCAAACATTTTAATTAAAGAGACAATTATTATAAATAAATTGGTATAGAATTATATTGAATAAATCTATACCAATTTTTAATTTGATATCAAGCCTTTGTTAAAATATCTGTTAAACCCAATTTTTCTATTCTCTTTTTTATCTCATTTTTATCTGTAGTATATAGTCCCTTTTCTTTCATTCTGTTAAAATACTCTGCACCTGCAAAAGTGTATCTGTTTTTTCTACCCTCTGCAGTTTTAATTTTATAATTGGCATAGCTTATTATATCTCCAATGGCAGTTTCAGTTGGAAGTACCAGCTCAGGTCTGCCGAGAGCATATCTTACTGCATTATGCCCTGCAAGAGAACCTGTACATATGGCTTCTGTATGACCTACGAATAAACCGCTTTTTTCTCCACCACAGAATAGGTTATCTACTCCTCGTACAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //