Array 1 21083-22669 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT706990.1 Prevotella ihumii strain Marseille-P3385T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 21083 47 100.0 30 ............................................... AGACGGTAAAATTATTTTAGAAGTATGGAA 21160 47 100.0 29 ............................................... CTTCGTTTGTTCTGGGGTTGGTAAAGAAA 21236 47 100.0 29 ............................................... CAGCTGCTGATACTAAGATTAAGCTCAAC 21312 47 100.0 30 ............................................... AGCGGACGTATGATAGCACAGTGGTGGTAA 21389 47 100.0 30 ............................................... GACGGCAGATGGTGTACTTTGCTCTTATAC 21466 47 100.0 30 ............................................... CGTTATGTAGAACTACCTTTCCAACGTGCA 21543 47 100.0 30 ............................................... AAATTCTTCGATGAAATCATTGCTGGCACA 21620 47 97.9 30 ..........A.................................... AAAGCAGAGTTGAAAAACGTTAATCCTGTA 21697 47 97.9 30 ..........A.................................... CTTAGTGTCGGGATTATAATTCTGATCCCT 21774 47 100.0 30 ............................................... AGAGCTTTTCCGACTGGACAGACCACGCCC 21851 47 100.0 30 ............................................... TTAGTGTTACTTTTGCATCGCAGTCGAACA 21928 47 100.0 30 ............................................... TAATGCTTCAGTAATATAATAGTCTATAAT 22005 47 100.0 30 ............................................... CTCAAATCAACAGGGCAGCGTATGCAATCC 22082 47 100.0 30 ............................................... GTGTTACAGATAGAGACTTTTACACCAATA 22159 47 100.0 30 ............................................... CACCGCCTGGCACACCGCTACCCCCCGGAC 22236 47 100.0 30 ............................................... TGACGCTACGTGTAGGAAAGGCTGCGCCTT 22313 47 100.0 30 ............................................... GTTCTGTTGAAAAAACCGCCACATATAAGA 22390 47 100.0 30 ............................................... GAGTTCTCTAATGCTATACCCTTCGGCTCT 22467 47 100.0 30 ............................................... TCCCCCTCGATGGTGGTAAGTCCATCACGC 22544 47 100.0 30 ............................................... AGAAAGTATGCCAGTAGGAGGGAGGATTAG 22621 47 93.6 0 ........................................TT....A | G,G [22658,22666] ========== ====== ====== ====== =============================================== ============================== ================== 21 47 99.5 30 GTTGTGATTTGCTCGAAAAATCGTATCTTTGCAATATAAGAAACAAC # Left flank : TGTGTCCGGGAAGCTGCTTGATGAAATAAGGGTTGATGAGCTTCAGGCGGAAGTGCGGCTCAAGCATGCGCCATACGGAATCCAATAAACACTCGTGCTTTCCATCCCGACTTCCTGTACTTGATATTTGAGCAACAAATCACGCATTTCGTACAGTTCGAGGGTCAACACACCAAAAACTTTCTCAATAATTTCGCCCATGCTGCTTAAAATACAAAAATAAATGCTATCTTTGTGCACGTCAAGGCCACATACGATTCTCATAAGCCTACATTTGAGGATTATTAATTTTTTTGCTCAAAGATAATACATATTGTGACATAGAGCACGCATTTAGGACAAAGAATTTATGCTGGCCTTGACACTTTTCCGTCAAATGGGAAGGCGATTCGGGAATTTATTTCCCGTTTTTTATTTCCACTGGCTTATATTTCGCGATTTTTATGTAAATTTGCAATATAAGAAACAACTTCTTCCTCATATTGCATCAAAGACATATA # Right flank : AAGAGTGTAATTTATTGAAAATGAGCGTAGGTTAATTGCTCTTGATAGTAATAGGTTACGATTTAGTTAGTTATCTACTGCATTATCCTTCTGCGCGTCGCGTAACCTTCAAAGAACTCTTTGTATGCAAAAGTAGCTATTTTATCCGAGATTTTGATATAAACTCCCGGATTTTTTATCACCTCATTCATTAGTTTTTCCGTAAAAGCGGTATTGTTCGTCGGAACACCATTGCCCAAAACGAGTTTAGAACAAACGTGTGCCGACTACCGCATAGCCAGAGAAAAGGGCATTGCCTCACGCCTAAACGATGTTTAGACTGATGAAGCAATGCCCCTTTCTTTTGCGCCTATGCCAAGAGGTGCTTTTACGGGTTTTCAAATGATTTTTCTTTTTTCGCTGTCTCTTTTGCCGTAAGCATCCAATATTAGCCGCCTTTGTGTAACATTCTTACTTTACTACCTTTGCCCGAAAAACTTATGTTTGTACTCAACGAAACA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTCGAAAAATCGTATCTTTGCAATATAAGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 601980-603943 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT706987.1 Prevotella ihumii strain Marseille-P3385T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 601980 47 100.0 30 ............................................... TTCTTCGAGCGTGCAACTTTGCGCTATCAA 602057 47 100.0 29 ............................................... ACACGCTACAAACATTCAACAAACAAGGC 602133 47 100.0 29 ............................................... ATAATATGCTTTTATACCTTCAATATTCC 602209 47 100.0 29 ............................................... CAGAACTTACGTTCGCACCCATCTTATAT 602285 47 100.0 30 ............................................... CAACGTGCTATAAAGGATTGCAAACGTTGA 602362 47 100.0 30 ............................................... CGCCCAATACCAAAATAGAAGTGGAACGTA 602439 47 100.0 30 ............................................... GACACCGCATCGCAGTTCTATCTGAGCGCA 602516 47 100.0 30 ............................................... ATAGACGCAGACGGCAACGGCACATGGCTC 602593 47 100.0 30 ............................................... CATACGTCAGGCAGGTAAACGGACATAAAG 602670 47 100.0 30 ............................................... AAACTACTTTTTATTTGAAGATGAGAGGGG 602747 47 100.0 30 ............................................... TCTCTTTCGGTGTTAAGTCTTTTGCTTTCA 602824 47 100.0 29 ............................................... ACAATTACATTCTGTCAGTTTTTGTAATA 602900 47 100.0 30 ............................................... CCTAATTATGAAACTATAATTAATATTCTT 602977 47 100.0 29 ............................................... AGTAAAAGCAAGAGGTCAGGTAACTATTG 603053 47 100.0 30 ............................................... TGGACGATTTCGACACCGACGAAGACTGCC 603130 47 100.0 30 ............................................... CCACGGCGACGCTTAGCGACGACACGCTCG 603207 47 100.0 30 ............................................... AATTTTTCTTCGGCAAATTCCGTTAGGTCA 603284 47 100.0 29 ............................................... TGGCCTTTTGGATATGGGGCTTATAAATA 603360 47 100.0 30 ............................................... AAATTTAGTATCAATTCCATCTCCATCTTG 603437 47 100.0 29 ............................................... CAAGAATTAGAAACTAATCATTCATATTA 603513 47 100.0 30 ............................................... ATGTGTATCTTTGCAGCCAACGAATTGCGC 603590 47 100.0 30 ............................................... CGCATTGCACGCAAATATCTTTCTATGGGT 603667 47 100.0 30 ............................................... TAGATATATCTTCCGCCTTACGTTCTGTTG 603744 47 100.0 29 ............................................... GAACAAGACCTACACCCTATCCATGTATT 603820 47 100.0 30 ............................................... CTCGAACTTCTGATTAAGATTCAGAATTTT 603897 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 26 47 100.0 30 GTTGTGATTTGCTCGAAAAATCGTATCTTTGCAATATAAGAAACAAC # Left flank : CTCAACTTGCAACTGAACTGCGTCTGGCTGCCGTCCACCGTGATGCGTCCCATGACGGGAACCGTCCCGTCCTTTTTCACTACCTGACGCTTGAGGTAGTAGATTACTGAAAATGTACTCTTCATCGTTCTTAATTTTTGGATTTCAAAATTAGTTGGTGAAGAGTCCGGTGTCGGTACGCAAAACGGGGAGGAACGGCGCAATCTTTTTTCCGTAACCGTATTTGTTACGTGAGTTGTGGGTAACTCACTATAACATAGTGTCTTGTTTCGCCATTCGTACCCGTTTGTCGCATTTTCGGACATGGTTACGAACAAGTAACGTTGCGGCGTCAAGATTTGGCTTCGGCAAGGATTGTAATGGCTTCACGAATTATCGCCACTTTAACTAAAACCCTTGTAACTCAATTCTATCACTATATCTTTCCGCATTTCACTTTTTTGTAGTAACTTTGCACCAAAAGAAACAACTATCCACGAGTGATGGTCAGACGCTGACCA # Right flank : CTTGATTAGAATAAAACACTATATATCAAGCAATTGCAAATATTTCTTGCAAAGAAAAAATGCAAAGAAAAGAAAAGTACTACCTCAAAAGGGTGGTACTTTTTATTTTGTAATGACAGAAAAAAGCGCAGCAACTCAAAAAGTTACTGCGCTTATATTTGCTGATTATAAAGTTACATCAGAACGGATATTACATTCCTAATGCCTTCTTTGCACTGTCATTATTAGGGTTCACTGTCAGAACTTTTTGGAAATATTCTTTAGCAAGTTCAGCATTACCCTTCTTTGAATGATAATAACCTAAGCCATAGTAAACTTGTTCAAGATAGAGTTTAGCATCACCATCAAGGGTTGGTTTAGCTTCTTCAAATGCTGCAACCTTCTTATAGATTTCTGCTACCTTATCAGGATCATTCTTCATTTGTGCAACACTAGCCTGGTTGAGCCAAATCCAATCTGAGATTGATGGGAATTTGGTTATCATAGTGTCATAAATAGCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTCGAAAAATCGTATCTTTGCAATATAAGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 1549308-1548628 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT706987.1 Prevotella ihumii strain Marseille-P3385T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1549307 36 100.0 28 .................................... AATAAGTCTGTTATATCACATCCTATTG 1549243 36 100.0 29 .................................... ATAATAAGTCTTTATAACCGTTTTCTAAA 1549178 36 100.0 28 .................................... GCAGTTCTTCTTTCACATCGTGCCATTG 1549114 36 100.0 30 .................................... GCTGTGTGATGTCGGCTGTGTAGTTGATGA 1549048 36 100.0 29 .................................... AACTCGCAAACGAGGATATGTGCGTCTGT 1548983 36 100.0 28 .................................... CTTGCGATGAAGGTCGGAAGCTTGAGTC 1548919 36 100.0 26 .................................... AAGTGGCTCCGTGAAAACGGTTACCT 1548857 36 100.0 28 .................................... TGTGTACTCTTGTGCTGCTTGTTCTATT 1548793 36 100.0 28 .................................... TCTGGTAAGGAAGTGATTGCAGTTCCAT 1548729 36 100.0 30 .................................... CAATCATCACCAATGTAGCCAATTCTGCGA 1548663 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 28 GTCTATAAGACTTAATTAATTTCTACTTGTGTAGAT # Left flank : GAAATCGGTTGAAAATTATCCTCAATTTATCAGATAGCCAATGTTAGTAATCAGTTATGATATCAAAAACGACAAGTTGCGCAGTACCTTTAGCAAGATGCTTTGCAAGCATGGGGCAATACGCTTACAATATTCTGTTTATGAAGTAAATCATACGAATAGGGTATGTGAAAATTTAATTTTAAAGATTGAATCCGAATTTGCTGCTAAGTTCGGAGGTGATGATAGTGTGATAATCTTTGATGTTGCAGGCGTAAAGCTTAAGAAATATGGCAATGCCATTCATCGTGATAAAGATATTGTATATTTGTGAAAAACAAATATAAGTCTCTATGCAATGAGTTAGAATTTCTATTTTCCCTTTTAATGTATTGATATATAATAACTTATATTAATCTTGTTAGGGTTGTAAAAATGTGATGGGGGTAAAAGATACCTTTGATTTTTCATTCTTCTTTTGCGTAAATAAAGGAAATATTGTATATTTGCAACATAATAGA # Right flank : GCAATGTCCTTTATCTTCCAAAAAGCCACGTCTATAAGACTTAATTAATTTGTAAGCATCCAATATTAGCCGCCTTTGTGTAACATTCTTGCTTTACTACCTTTGCCCGAAAAACTTATGTTTGTACTCAACGAAACAAATGTTTTTCGGGTTTGTTGCACTCCTGTGGACATGCGTCAGGGTATTCTTCGCCTGTCCCAATTGGTACGCAGCAATGACTTCAATCCTTCTGATGGTGTTGTCTACGTTTTCTACAATCGATCCCGTAACCGAATTAAATTGCTGCACTGGGAACGCTGTGGTTTTGTCGTGTATCATAAACAGATGGCACAGGGTTGCCTGAGTCCTAAAATCATACGGGCGAGAACTGGATTTTATGAACTTCGCTGGGACGAATTGGTACTCTATATTGAAGGTATAAATCCTAATTGCTACCGAAGAAAAAGATACAATAAATCTTAGTATTTTCTTGCCAGTGTCAGATATTTTTCGTAACTTTA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTATAAGACTTAATTAATTTCTACTTGTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //