Array 1 112281-109809 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJSG01000020.1 Citrobacter braakii strain HH8 14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 112280 29 100.0 32 ............................. ATTTCATTCAACCGGTCCAGCTCGAGCCGGTA 112219 29 100.0 32 ............................. CCGGCTGTGTCCATGATCGCCAAAAACGCAGA 112158 29 100.0 32 ............................. GATAATATTGCGCCACGACTCATAGCGGCTGT 112097 29 100.0 32 ............................. TAAAAGCCCTTCCCTTCAGTTCCTGCGTCAGT 112036 29 100.0 32 ............................. CTGTGACACGGACGGTATCGCCAACACCTCCG 111975 29 100.0 32 ............................. TTTTTCCAGTGCCCGGACTTATGCACAACCGA 111914 29 96.6 32 ............................T TACTAAAATTTCTTATTCCGTAGCGTCAGCCC 111853 29 100.0 32 ............................. GCGCTTAGATACAACAACCTGCCGTAATCCAT 111792 29 100.0 32 ............................. ATGATCGGCGGCAGCGATAACACTAGCGCGAA 111731 29 100.0 32 ............................. GTGTCAACCACGTCGCCGAGACCATCCAGTGC 111670 29 96.6 32 ............................C GCAGGGAATATAGCGGCCGGTGAAACTCTCTC 111609 29 100.0 32 ............................. CCAAATGCAAACGGCTCCTTCTTCCGTGTCGT 111548 29 100.0 32 ............................. CCGCTGGGCTGGCGACCGTCGTGGTTTGCAGA 111487 29 100.0 32 ............................. AGAACGGTGGCGGGTACTGGCTGGGCCGGATT 111426 29 100.0 32 ............................. TCTTTGGCCGCATAGGCTGCATCTTCCATTAT 111365 29 100.0 32 ............................. CCACTCTGGCGCGTATTCGTGCCGGAAAATTC 111304 29 100.0 32 ............................. GTATCATACAATTTCTTTCATAGACCCGGCAC 111243 29 100.0 32 ............................. CAGGAACGCAGATCAGGCAACAAATCGCGCGT 111182 29 100.0 32 ............................. ACAAGCTGCTGTGCCTGTTTAACCAGGTTAAC 111121 29 100.0 32 ............................. TCCGGACAGGGCAACGTGATTACCATTCCGTG 111060 29 100.0 32 ............................. GCTTCAGCATTAGCGGACCGCGGGGAGGATTC 110999 29 100.0 33 ............................. TCACGCGCGGTCACGTTGATGTCACGACAGAAG 110937 29 100.0 32 ............................. GTACGTGATCGACCAGGACGCAGACGGGAACC 110876 29 100.0 32 ............................. AATGATGGTGCGCAGCTCATGCAGCCTGGCTA 110815 29 100.0 33 ............................. CCAAATCTGTCACGAAATCATATTTTCCCCACA 110753 29 100.0 32 ............................. CATGTCGAGAAATGCTTGCAGATTACTGCTTA 110692 29 100.0 32 ............................. CGTCATCCGTCTTTACCCGCGCCTTGCGCAGG 110631 29 100.0 32 ............................. CGATCGTAACGGTTAGACAGCTAATTTGTATG 110570 29 100.0 32 ............................. TCACGATTGAATATTAAATAATCATCAGCTGA 110509 29 100.0 32 ............................. AACGAGGGGGCAATTGAGCCGGACGTTGACGG 110448 29 100.0 32 ............................. ATATTGAGGACTCGATATCGATTGCGATGATG 110387 29 100.0 32 ............................. TTGCCCGACCAGGCTTTCACTGACGTGCTCAA 110326 29 100.0 32 ............................. GCATACGGCAGGATTTACGAAATTACTATCAA 110265 29 100.0 32 ............................. TCCGCGACCGGTTCCCCCTCCCATATATTCGG 110204 29 100.0 33 ............................. GGTATTCTTTGTCTGAGTAACTGCCTTTTCTAA 110142 29 100.0 32 ............................. GTGCGCGGCCCCATTTAGCAGGGCGTTTTGCG 110081 29 100.0 32 ............................. CCAGGCTCCGCTCGGCAAGGCGTACAACTGGA 110020 29 100.0 32 ............................. GATATGATGTCAGGAAGCGGCGGCGCGTCTGG 109959 29 100.0 32 ............................. CGCATAGCCGAGCTGGAGGCGCGGACGGTGAA 109898 29 100.0 32 ............................. TCTCTGGCCGCGTTTAAATACTCAGTCGAGAA 109837 29 89.7 0 ............T............T..A | ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGACGCTGGCGAAATAGACCCTCCGCAGCCTGCGCCAGATATGCTGCCGCCTGCAATACCGGAACCGGAATTGTTTGGAGATGGTGGTCATAGGGGGCGTGGTGGATGAGTATGGTTGTCGTTGTAACGGAAAACGTTCCGCCGCGTCTGCGAGGGCGTCTCGCCGTCTGGCTGCTGGAAATTCGTGCGGGTGTTTACGTTGGTGATACCTCTAAGCGAATTCGGGAAATGATTTGGCACCAAATCATACAGTTGGGCGGAGCGGGAAACGTTGTGATGGCCTGGGCGACAAACACGGAGTCAGGTTTTGAGTTTCAAACCTGGGGAGAAAATCGCCGTATTCCGGTAGATTTGGATGGACTTAGACTAGTGTCTTTTCTTCCTTTTGATAATCAATAGGTTGAGTGTTCTTTAATAAAACGGAATTGTTGTTCCCAAGTTGGTAGATTGTTACTTGATGAAAATTGCAATAGAAAACAGTTATATATATTTAGT # Right flank : CTTTGAAAGCAGAAATATTATGGGGCTGGATGGGTTACGAGGATTTACCCGCCTTTGCCAGTTCTTTCACCAGCGGGAGCATAATGCGTACCACGTCGCGGCTACGGTGCTCTATCCTGCCCGGTAAGGCTTTATCGATATGCTGCTGGTTATCCAGTCGCACATCGTGCCAGCTGTTGCCTGCCGGGAACGAGGCGCTTTTGGCGCGCTGTTGATAGCCATCTTTCTTGCCCAGACTCCAGTTGGTTGCTTCAACGGAGAGCACGGCAATGCCCGCGTTGTCGAAGACCTCTGCATCGTTACAACATCCAGTACCTTTCGGATAGTTTTTGTTCAGTCCCGGATTGGTGCTGGCTACGATACCGCGGCTGTGCGCGATGGCCAGCGCCCGGTCACGCGTCAATTTTCGCACCGCTTCCGGGGTTTTCTTACCGCTATTGAAATAGAGCTTATCGCCGACGATCAGGTTATCGAGGTTGATAACCAGCAGCGTATTTTTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //