Array 1 24-518 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGFP01000049.1 Mycoplasma iowae 695 contig53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 24 36 100.0 31 .................................... TAATTCCTCCTCTTTGACTAACTTTCTTATG 91 36 91.7 31 T...GT.............................. TGTTGCATGTTTACCCATATCAACTATTCAA 158 36 100.0 30 .................................... TCAAAATACATAAGCATTACCCTATTAATT 224 36 100.0 29 .................................... AGTAAAAAATTAATTTTGTTATAACATTG 289 36 100.0 30 .................................... TTTGCTTGTGGTACATTCACACGTGCTAAG 355 36 100.0 30 .................................... GATGAGTTTAAAGAAATGATTTATGTTAGA 421 36 100.0 27 .................................... TTGTATTATCTCTACTACTTGATTTTT 484 35 91.7 0 AG....-............................. | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 97.9 30 GTTTTGTTTTGATACCATATCCATGTGAACTAAAAC # Left flank : TCTTGCCTGGTGTCATTTCACAAG # Right flank : TTAATTCG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTTTTGATACCATATCCATGTGAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [21.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 26-386 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGFP01000047.1 Mycoplasma iowae 695 contig51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26 36 100.0 30 .................................... TGTTTAATAGTCATTTTAAAAACCTCTTTA 92 36 100.0 30 .................................... AGCATGTGGAAATGTATCATATGATTTAGT 158 36 100.0 30 .................................... TATTCCAAGTCATAAATAAGATTATCTATA 224 36 100.0 30 .................................... TTTCACAAGAAAACGGAACTTGCTATAAGA 290 36 97.2 25 .................................T.. TTTTTTAAGTATATATACATAGTAT 351 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 99.5 29 GTTTTGTTTTGATACCATATCCATGTGAACTAAAAC # Left flank : TGTTTTAAGCTTCATTTTAATGTAGG # Right flank : CATGCATCTAAAAAGTCATCATATTTAAAGTCTAGTTCTACTAATTGTTTTTTTGTTTTATCTGTATTGTTTGGTTCTAGACTTCTAACAACATTTATAATTTTTCTTCTTGTTTTTCTTTTAATATTTTTTAGTTATTAAAGAATTTTCATTTAGTATTTTGTTAATAGATGAAAAACTTATATCAAAGTTATCTTTGATATATTGGTTGTAAAACAATTTGTGAGACATTCTATAGTTTGTGTTATCTCTAGATGAATTAATTTTTCTTGAATGTTAATATATAGATCTACAATATTTTTTTATGTTTTTACAAATGGTTTTTTACTTACATTTTTTTATTTTAGTGTTGATAGATGAAATTTTTCTCTCCATAACTTTATATATGTCTATTACATTATTTTACTGATTTGTTACAAATTAACGAAAGTCTTTTAGCTGATAATTTCTTATTTTTTATAAGCTCTTCTATCTTTCCAAATATTCATAATTTAAAATTT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTTTTGATACCATATCCATGTGAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 1-1025 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGFP01000038.1 Mycoplasma iowae 695 contig43, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1 36 100.0 30 .................................... TGTAACACTTTTTTTAATATAATAAAAAAT 67 36 100.0 30 .................................... TAAAGTCTCTATTAAGTATTTAGTTATTAA 133 36 100.0 28 .................................... TACACTTAATTATGATAAAAAATACTAT 197 36 100.0 30 .................................... TCTTTTCCCTTGAACACTATCTTAAACATT 263 36 100.0 30 .................................... ATGAAATCACCTTTCACAATCAATTGATTT 329 36 100.0 30 .................................... ATGGCGTTGAGAGAGTTAAAATCATTTAAA 395 36 100.0 30 .................................... AATAATATGAATAATACACATAATATAATT 461 36 100.0 31 .................................... TCTCTATTGTTGATGTTTGGATATAATTTAT 528 36 100.0 30 .................................... GGAGTATTGAGAAATGGAAATCGAAAGTGC 594 36 100.0 30 .................................... TGTCACTATCAGTAATATATGCTTTGTATT 660 36 100.0 30 .................................... AACTATCTTGCATCTGTTCAAAGTCAACAA 726 36 100.0 30 .................................... GGTCGTTGTTATCTATTATAAAAAATCTGC 792 36 100.0 30 .................................... ATGCGCGCGCATTATGCGCGTACGCGTATT 858 36 100.0 30 .................................... TGAGGATGAGGATGAAAAACCTAAGAAATC 924 36 100.0 30 .................................... AATAACAATCATAGTAATTAATTACTACAT 990 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 16 36 100.0 30 GTTTTAGTTCACATGGATATGGTATCAAAACAAAAC # Left flank : | # Right flank : CCTCAAAATCAACTATTATCTAATATATTTTATTAAGTAATTTATATAAAAATTGGATACACTTTCTTCATTTTTAAGATAATTTTCAATAACTTTATTGTTTATTAATGTATTCATTTTTAATTCAAGATAACTAATAAGTTTATTATAGTCATATATCTCAACTAAAAAATCATTACAAATTACACATGATTCAATTTGAGTTATGTTAACAATATTTTTTCTTAAATCATTTGTAACAAAAATAAAATTGTGACTATTAATGTATTCTGAAATATCATTAATATTAAGTCAATCAATGTCACAAAAAACAAACGTCATTCTTTCATCAAATAAATTATTTTTTATCAAAGAAATAAAAATATTTTTATTAATATTGATCAAATCATTTATTTCAAACAAATTTGAAATAATTTTTTGCATTTCATTTTTTTCTTCGATAACATCAAAACCTATTTTGCTATTTATATATTCTTTTATGTTGTGTATTTTATCATTAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTCACATGGATATGGTATCAAAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //