Array 1 1082660-1084184 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKO01000014.1 Akkermansia muciniphila strain GP41 scaf-14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 1082660 31 100.0 34 ............................... CAAAAGATACCAAAAGAATCCAAAAGAATACAAA 1082725 31 100.0 34 ............................... TTCACAAAAAACCCGATAGGAGCCGCAATCGGAT 1082790 31 100.0 33 ............................... CCGTTGCATGGTTGCAATGGGATGACGCACAAG 1082854 31 100.0 34 ............................... CTCACAAAAATCCCTGTATGAACCGCAATCTGAT 1082919 31 100.0 34 ............................... GATATCTTGCCCTGGGACGTTAAACCCGCCCTTG 1082984 31 100.0 34 ............................... AACATTTCCGGCGGGGCTGACGGTGGAATAGGCA 1083049 31 100.0 34 ............................... TCTTAATTTTGCGAACCAGATTCACAGTCAGTTT 1083114 31 100.0 34 ............................... ATTTTCGGATTGTTGCTTGTCATAGTTGTGCAGG 1083179 31 100.0 34 ............................... AAATGGGAGGGGGTACTTTATAATGATTGGCAGA 1083244 31 100.0 34 ............................... GTTGGCGTAAGTGAAATACCTTGCCCCCGCACCG 1083309 31 100.0 34 ............................... GGCGGGGGTTAGATAGTAGCGGTGGACGAAAAAC 1083374 31 100.0 34 ............................... CTCTGTTATTTACCCTACCAGGGGCGTTGAGACA 1083439 31 100.0 34 ............................... TGCCTCTGCGTCAGCTCATTGACGTCAAACTTAA 1083504 31 100.0 34 ............................... CGGAGGGTCAGCTAGCTTCACCTGCAACGGAATC 1083569 31 100.0 34 ............................... CCGCGTGATTGTTAGGCAGGACTTACAAAGTTAA 1083634 31 100.0 34 ............................... CGGGGACGGGGTAGTGGACGATATTACCGCCCTT 1083699 31 100.0 33 ............................... ATCCAGCAGTGTTAAAATCTCCCAATCATCCCA 1083763 31 100.0 34 ............................... CATGTGGAACAATTTGAACCCGTTGAACCCGTTG 1083828 31 100.0 35 ............................... ATGGGGCCTGCGAGTTGTCCCACTGCAACCATGCA 1083894 31 100.0 34 ............................... GCATAATCCTACCCACGGAAATGGTATGGCGTGA 1083959 31 100.0 34 ............................... TAAAAAGATAGTAGCTTGAGGCAGGGCATTTACC 1084024 31 100.0 34 ............................... TCCAACAACCCTATAACAATATAAACATCATAGA 1084089 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 1084154 31 90.3 0 .........T...................GT | ========== ====== ====== ====== =============================== =================================== ================== 24 31 99.6 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGAGGAAGACAGGTCAGTTGACTGCCATTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTGCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGGCCGCATCCGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCTGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 73449-71739 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKO01000009.1 Akkermansia muciniphila strain GP41 scaf-9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 73448 33 100.0 34 ................................. ATTAACCGGGTGCGCTGGACAGAAGAATCTGAAG 73381 33 100.0 34 ................................. TGTGCCGTTGCCGGACCCTCGGAAATAGTCATCA 73314 33 100.0 35 ................................. CCCCGCAACAATAAACTAAAAGAAAGGAAAACTAA 73246 33 100.0 34 ................................. CACTTTGACGTTGCCCCCGCCCTTGAGGATTTGG 73179 33 100.0 34 ................................. ACCCTTTAAGAATTAGGAACTTACGATTGTGTCA 73112 33 100.0 34 ................................. TAGACGCTGAATAACTACGCCGCCCTATAAAACC 73045 33 100.0 34 ................................. CCCGGACTTTTACGAGGATGCGGGCCTGTATGCT 72978 33 100.0 34 ................................. CGTCGCGCGTGCCAGGCCATGACGAGGGCGTCGG 72911 33 100.0 33 ................................. TCTTCGATGGCGCGGGCGAGAGCCCGCCATGCC 72845 33 100.0 34 ................................. GATATGCGGGCAGTCCTCGTATTTGACGCGGATT 72778 33 100.0 33 ................................. AACCCCCGGCACCCCCGGATACCAAGGAATCCA 72712 33 100.0 34 ................................. CCCGCCGAGCTATTGATTGCCTTGACGAAGTAAC 72645 33 100.0 34 ................................. CGGGCAAAAAAAGTGTGGCATCGTCAATACTGCT 72578 33 100.0 34 ................................. CGCGGTACGGGCAACGGCACGAAAGAATACGGTG 72511 33 100.0 34 ................................. TACGAGGGGGCGGGCCTTTTCGCTTACATTGAGG 72444 33 100.0 33 ................................. GGCTCAATACACGGCAACGGCGGCAAGTGGCTT 72378 33 100.0 34 ................................. TCGCATGCGTGTGCAAGTCCGATTGTGGTTCCTA 72311 33 100.0 34 ................................. GGCCTGGCCGGTCAACTGGCTGATCTGCCAGCCT 72244 33 100.0 37 ................................. CCCGCGCATACTCATGACTTGCGCCCGTGTACGCGCT 72174 33 100.0 33 ................................. CCCGGTATCCGGGGGTGCAACGGAGACCGGGGA 72108 33 100.0 34 ................................. TTCACAGAAAACCCTGTATGAGCCGCAATCTGAT 72041 33 100.0 34 ................................. TATTGGTTTATTGTTGTTTGTTGTGTGGGGGCTT 71974 33 100.0 34 ................................. GATGAAATAAGCATAACGTCATAAGCTCCAATCC 71907 33 100.0 34 ................................. TATGAAACGCCAGAAGAAGAAAAATTAGCCCTAG 71840 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [71817] 71771 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= ===================================== ================== 26 33 99.9 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CCTTTTTGTTTTCCTGTTTCACTCGTCTTCGTGGATAATCACCCACACGTTATTGAGCACGTCCCGTACCCATGCTGTTATCTCATGACCCTGACGAGTGGCCCATATTAGCACAATGGCCGACTCCCGCAGATGATAGGTCTGGGGATGGGCATTACCCTGGTCCTGCGGAGATATGACAGTAACTGATCCGTACACTGGGATCGGCGTTATAACAAGAGGTGTATTTGATTCAGACATGGCCGCTATTTCTCTTAGTTTGCACTCTTCTTGCAACGACATTGCACTCAACGAAAAAAATTCACCATCTTTCTGTCAAATTCATTTCTATCGCGGAATTTTTCACCTTCTTTCTTCCTGCACGTTGTCCACCCTGCGAGCCTTTAATTCATCAAGCTTTCACCCCTCTTCACCCCAAATTCACCCCTTTTCCATGATCCCTGTCACACCTCACGTGGATTGAAACATTAACCGGGTGCGCTGGACAGAAGAATCTGAAG # Right flank : CTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 106522-105818 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKO01000009.1 Akkermansia muciniphila strain GP41 scaf-9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 106521 33 100.0 34 ................................. TCCCATGGGACGTTAAGCCCGCGCTGGCAGACCT 106454 33 100.0 34 ................................. CCCCCTCTTCGGGGCTTTTGGGTTCGCCCCCGGC 106387 33 100.0 34 ................................. ATCGCCGACCACTGGTCCGACCCGGACACCGTAG 106320 33 100.0 34 ................................. GGGGACAGGAACCCCGCGTGATACCGTTTCACCA 106253 33 100.0 34 ................................. ATCGCAAAAGTCACGATAGGAACCGCAATCGGAT 106186 33 100.0 34 ................................. CTCTCTAAAAACCAACGGGTTACGATTGTGTCAT 106119 33 100.0 35 ................................. CGCCGTTATCTATCCCACCGGGGAACTAGTGACAA 106051 33 100.0 34 ................................. CGGTGTTCCAGGCGTCTTCCAGCGCCTCGATATG 105984 33 100.0 34 ................................. ATCAAAGGGAGGAAAGCTCCTAAGAGAAAAAACA 105917 33 100.0 34 ................................. AGCGGGTGTGAGGTAGTAGCGGTGGACGAAAAAC 105850 33 75.8 0 ........................TG.AACGTG | ========== ====== ====== ====== ================================= =================================== ================== 11 33 97.8 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : ACGGCGAATATGGTGAAAATTGACAGAAAGATGGCGAATTCACCTTTGAACGCCACCCCGTTGCATCCCCATTGCAACCTGGTTGCCCCTCCCTTGAAAACGGCTTGAACTGGCCCCCCTACTCCCCGATCACGTTCCTGGCGGCCAACTCGTCAAATACGCGGATGAACTCTGCTGCGTCCATCTGCTGCCGGGGCATGTGAAGAGTGCCCAGCGTCACCACGTCCAGCCGGTCATATTTGGCTACTGCCGGCATCGTTGGCCAGCGGTAGGCCGCCCAGCGTCCCTCCGGTCGTGATGCCGACCAGGGACGCTCAATGTGAAGAGGAACCCCTGCGGCCATGGCCAGGCGTCCCGTTGCTATATCCTCCGGATCGTCACTCCCAATGGGCAGCCGGTCCAGAACCGCCAGCATCCGGCGCAACGCGGCACCCGTGAACCCGTAGCACAGGCCGCACATGATCCGTCCGTCGCAGCAGCTGCCGAACCCTTCCGCGCCC # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //