Array 1 61625-60398 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSSZ010000025.1 Streptococcus thermophilus strain B9 Contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 61624 36 100.0 30 .................................... GTTCATATGAATATTTGACTCATGAATCAA 61558 36 100.0 30 .................................... AGTAATATCAAAAAAGCCCCCTTGATTATC 61492 36 100.0 30 .................................... TTGTGTTCGTTTAGGTGTGTACCATAGAAA 61426 36 100.0 30 .................................... AACGGCCTATGCTTAATAAAACAACTTAAA 61360 36 100.0 30 .................................... GAATGGCTTGTCTATTTTTGGGCTTTTGTG 61294 36 100.0 30 .................................... CGTTAGCAGTTTCAATCCGTAGCCACACCT 61228 36 100.0 30 .................................... CTCAATCTAATAAATGGATTCGGAAAGACC 61162 36 100.0 31 .................................... CTAGAGGTGACCAAGGTGTACCTGGACCTAA 61095 36 100.0 30 .................................... CTTCTTAAAATTGAATAATTCGAAGTACAT 61029 36 100.0 30 .................................... TTCTAAGTCAAAAGAATATGATGCTAGTGG 60963 36 100.0 30 .................................... GGTGGCGCTACACATACACTACGCTACGCT 60897 36 100.0 30 .................................... TTTTGCTAGGATATGTCCGAACGTCGATAC 60831 36 100.0 30 .................................... TAAAACGCCCGTAGCACGATTTTATTGCAT 60765 36 100.0 30 .................................... AAGCTAAGTAAGCTATATTTTGACCGTTAT 60699 36 100.0 31 .................................... CTTAGCCTTGAAATGGCACGTAGTGAACTTA 60632 36 100.0 31 .................................... CGGACAGCGATAAATACACTCTATACAGAGA 60565 36 100.0 30 .................................... TAAATAATAAAGTTTTCTACCAAGATAATT 60499 36 100.0 30 .................................... CACACTTGCACAAGTATGTTTCAATCTTAT 60433 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 19 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAATCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 124846-125606 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSSZ010000008.1 Streptococcus thermophilus strain B9 Contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 124846 36 100.0 30 .................................... TCTTTCTATAGCATAATTGTTAGTTGTCCT 124912 36 100.0 30 .................................... GAAAGAATCGGTCTTCTAGATGGATTCCAA 124978 36 100.0 30 .................................... TAGGAAATTCATACCCTGCAGATATATCAT 125044 36 100.0 30 .................................... AACGATAAAAAAGAAGAAGCTTTCACGCCT 125110 36 100.0 30 .................................... TCGATTTTAAGCCGTGTATTTTGCTAGGTA 125176 36 100.0 30 .................................... GCTTGGAGGCGTCAATGTTCGCAGCTTATC 125242 36 100.0 30 .................................... ACCTGTCATCTCTGGGAGTTAAATTTCCTT 125308 36 100.0 30 .................................... ATTAGCACGAGCCTCTGTATACTGTTCTTT 125374 36 100.0 30 .................................... TTTGGTCTGGTGCGCCTTTTATATTGAATT 125440 36 100.0 29 .................................... GGTTCCCTATGAGCAAAGGACAACGCTTT 125505 36 100.0 30 .................................... TCGATTTTAAGCCGTGTATTTTGCTAGGTA 125571 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : GCTTGGAGGCGTCAATGTTCGCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 24-1708 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSSZ010000009.1 Streptococcus thermophilus strain B9 Contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24 36 100.0 30 .................................... GCTTGGAGGCGTCAATGTTCGCAGCTTATC 90 36 100.0 30 .................................... ACATTGAGTAAGTCAATAGTTTGCGATGGC 156 36 100.0 30 .................................... TAGAATAAGTGAATGGGAAACTGACGGAAC 222 36 100.0 30 .................................... ACATAGAAGGCTAAGCAATCAAGCAAAAGA 288 36 100.0 30 .................................... ACGACATCAAGCTGATTATCTTCTACATAC 354 36 100.0 30 .................................... CTGTCTAACATAGTCCCAAACTTTATCATA 420 36 100.0 30 .................................... CTAAAAACGGTGTTCTATATCGAGGTCAAC 486 36 100.0 30 .................................... TGTTTCCATCCGTGGTGAAATGGTAGAAGT 552 36 100.0 30 .................................... TTGAGCATTTACTTACTAATTTCAAACGGT 618 36 100.0 30 .................................... AGATGACCTATAATATAATCAAAATCACCT 684 36 100.0 30 .................................... TCTATCTTAGGCGGTGGACTGATGACGTTA 750 36 100.0 30 .................................... GATAGATATATATATTATATCACAATCCTA 816 36 100.0 30 .................................... TTATAGTATATCTAATGTGTTCCCGTTTGT 882 36 100.0 30 .................................... TTGAAATTTATAATATGGATGTCGATGATG 948 36 100.0 30 .................................... TCTAGAGACCTCTTCGTGTTGTCACAACCT 1014 36 100.0 29 .................................... GCTCTTTCCTACTCCTGTGTCTCCTATTA 1079 36 100.0 30 .................................... GTTTATCACTTATTTGATATACACTTATAA 1145 36 100.0 30 .................................... ATATCGGTGGTGGTGCGTTTGAAACTGACA 1211 36 100.0 30 .................................... GACCCACGGATACCGCCAAAACAGCACGTG 1277 36 100.0 30 .................................... GAAGTGATAGACGTTGTTAACTCATCAGCA 1343 36 100.0 30 .................................... TTTCTGTGTACTCCATCGGCTTTTGAGTGT 1409 36 100.0 30 .................................... GCTTTGCGAGTAACGCCGGTTGCTTTTCCT 1475 36 100.0 30 .................................... TTGGCATCAGTGAATTTGATGCCTGGAAGT 1541 36 100.0 30 .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 1607 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 1673 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TAAGCCGTGTATTTTGCTAGGTAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //