Array 1 32777-34085 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBQN01000022.1 Salmonella enterica subsp. enterica serovar Cerro strain NY_FSL S10-1809 NODE_22_length_63601_cov_42.5047_ID_3819, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32777 29 100.0 32 ............................. TGACCGGCTCAGATATTGATGTTATGTCGTAT 32838 29 100.0 32 ............................. GGATCTTGCTGGATATTGATTCGCCAGGCGGT 32899 29 100.0 32 ............................. GTCAGTCATCTGTTTACAGTACAATGATCGAT 32960 29 100.0 32 ............................. TATGAAATGCGGCTTAAAATTTGCCAAGTGAA 33021 29 100.0 32 ............................. CGTATGCGTTCACCAATGGTCATCTTTTTCAT 33082 29 100.0 32 ............................. GAGTCAGCCCAATGAGCAACATCGACAAATCA 33143 29 100.0 32 ............................. CAAAACGGCCTGGTAAGCTGGAATGACAACGC 33204 29 100.0 32 ............................. GCAACCCCGTTTCGCAGATCGCCGCCCTCGGA 33265 29 100.0 32 ............................. CCATAGAGTTATAGTTACTTTTGTCCGCAAAC 33326 29 100.0 32 ............................. GATGCTGGGTATGGCAGGTATGATTTGTGAAA 33387 29 100.0 32 ............................. TTTGCTTCCCTCGGGGCCGTGTCGCGCCCATT 33448 29 100.0 32 ............................. GGCGGCGAGTTCGGCTGGGTCTTTGATAATGA 33509 29 100.0 32 ............................. TCTGAATGCCTTTTCTTTTACATCTGGATCAT 33570 29 100.0 32 ............................. ACCATAACGAACCATTTCATCCAGCATGCGGC 33631 29 100.0 32 ............................. CCTTGTTAAATACAGGCGGTGGCGGCGGGGCT 33692 29 100.0 32 ............................. ACAACCCGGAAATTAAATTTTATCAGCACAAA 33753 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACGACTCAATG 33814 29 96.6 32 ............................T CGGAAAAATGCGCGCCGCAGGGGATGATGGGC 33875 29 100.0 32 ............................. CGTTGGGTTGTTTACCTGAGTATTTAGCAACT 33936 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 33997 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 34058 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGTTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 50792-52285 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBQN01000022.1 Salmonella enterica subsp. enterica serovar Cerro strain NY_FSL S10-1809 NODE_22_length_63601_cov_42.5047_ID_3819, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50792 29 100.0 32 ............................. CACCGGAACTGCCTCGCCCCCCTTCAGAATTA 50853 29 100.0 32 ............................. CTTCCCTGCGAACTCTTCTGCCATCCTGAACC 50914 29 100.0 32 ............................. CCGCGTAAATTTTCAGCAGTTGATCAACCCGG 50975 29 100.0 32 ............................. CGCACTCAGGCCGGAAAAGTTATTTACGAAAT 51036 29 100.0 32 ............................. ACGCGCCGCCGCCTGGCGGCTTTAACTCAGGT 51097 29 100.0 32 ............................. CAGCCTCGTCCGACACGGATCAGGGTGAGGTA 51158 29 100.0 32 ............................. CCGTGATTCGACCTCTAAATGGGTTCTCATTC 51219 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 51280 29 100.0 32 ............................. TCGGTCGATCTGCATATCGATACCCGCGGTTA 51341 29 100.0 32 ............................. CACAGAAGACGATAACGGGAGATTTCCCTAAG 51402 29 100.0 32 ............................. GTGAATGCGCAGAATATAGATGGGGACATTAC 51463 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 51524 29 100.0 32 ............................. TGATGCTGGAACATTGGGAGATGATCAACACG 51585 29 100.0 32 ............................. TTTATTTTTTATTCGATATTGTTTTTGAATAT 51646 29 100.0 32 ............................. GATTGGAAAACCAATCTCTTTGTTACCACATC 51707 29 100.0 32 ............................. ATCACGCACCCGAAACCTACACCGGCTTATTC 51768 29 100.0 32 ............................. CATCCCCTGACGCTGTAGAGCCATTTCCTGTT 51829 29 100.0 32 ............................. CGACATTTCAGCGGCTATCATCGAACAGTGTG 51890 29 100.0 32 ............................. AAATGTTTAATAAATACAGCAAATGCATATCT 51951 29 100.0 32 ............................. AACTGGCATCCCTCATGGTTGAGGGATTCAGT 52012 29 100.0 32 ............................. TTCGCGCTCAACTTATGGCGGTATTAAACACC 52073 29 100.0 32 ............................. CGCTTTATCGTAACTGTTTACCCGATAGTTCT 52134 29 100.0 32 ............................. GCTATCCAGCCGAGAAATGGCAGAACCGGTAT 52195 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 52256 29 93.1 0 A...........T................ | A [52282] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAAAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //