Array 1 57179-55823 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDUN010000023.1 Streptococcus thermophilus strain Rico66 Contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 57178 36 100.0 30 .................................... CGCTTCATCAGGAGTTATGCCGCTTTACTT 57112 36 100.0 30 .................................... CTATGGGAGTTTCAAAGATTATCAAAGCAC 57046 36 100.0 30 .................................... AAAACCAAGTCGAGGCTGGTGGCTTGGTAA 56980 36 100.0 30 .................................... GTTCGTCTTTAAGAGCTTGAAAGGCTGCTA 56914 36 100.0 30 .................................... CTATTTGCAGACAAAGAATTCAGTAAATCA 56848 36 100.0 30 .................................... CGATGGAAATGATGGATTGCCTGGCAAAGA 56782 36 100.0 30 .................................... AATATGTTCAAGGTGCTAGAACCGAAAACA 56716 36 100.0 30 .................................... AGACGTCCATTTTGCTATCTAGTTCAGGTA 56650 36 100.0 30 .................................... AACGGTTAAATGGCATCTAACATTTAACTC 56584 36 100.0 30 .................................... ATTAGATGCTATTATCACCGATGTTAAAAT 56518 36 100.0 30 .................................... AGTTAAAGCTGATGCAGGTGTATTGACTGG 56452 36 100.0 30 .................................... ACCAGTCCACAATATATTAATTGAATTTGA 56386 36 100.0 30 .................................... AACGGTTAATTTCGATATTCCAAAGAGTTA 56320 36 100.0 30 .................................... TCTGCCGCCCCGGGAAACCCAAGTGGTCAG 56254 36 100.0 30 .................................... CAAACCATAACACTGACGACAATTCCAAGA 56188 36 100.0 30 .................................... TAGAGGTAATGACGGACTACCAGGTAAGGA 56122 36 100.0 30 .................................... AGTTGTGACTTCGCTTTCGCTTGGCATCCG 56056 36 100.0 30 .................................... TTTCCAATGCCGTGATGGTTTTCGTCAGGA 55990 36 100.0 30 .................................... CAAGGTATACGGCATCCCTGATAACGTAGT 55924 36 100.0 30 .................................... TCTTAAAAATTGAATATTAACGAAGTACAT 55858 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGAACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 124662-128786 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDUN010000009.1 Streptococcus thermophilus strain Rico66 Contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 124662 36 100.0 30 .................................... CCTGTAGCTGATTTAGATGGACTTGAAAGT 124728 36 100.0 30 .................................... AAATCTATGGTACTGGTCAAAATAGGGAAA 124794 36 100.0 29 .................................... TAAATTGATTATTATATATACATAAAGTG 124859 36 100.0 30 .................................... CAACTTGAAAATTAGTAAAACATACTATAT 124925 36 100.0 30 .................................... GCTAAACAAAAAGCTGAAGCAGAACGCCTA 124991 36 100.0 30 .................................... TGCTACACCTAAAACCAATTCACTGCGAGA 125057 36 100.0 30 .................................... TGGGAAATTGGGAGAAGATTACAACACGTC 125123 36 100.0 30 .................................... CGTGTCGCTAAACAGACTAGCAAGACCTCT 125189 36 100.0 30 .................................... CCTATTATATACACATTTAAAACGACACTA 125255 36 100.0 30 .................................... CGTGTCGCTAAAGCTGCGAGTAAAACCTCT 125321 36 100.0 30 .................................... GAATCCACTTTGTTCTTTATAGTAGTTAGT 125387 36 100.0 30 .................................... CGTGCTGTCAGTCAATAAGACATGGGACTA 125453 36 100.0 30 .................................... TGAAAGTCTCACTAGTCCATTAGTGCGGTT 125519 36 100.0 30 .................................... TATTTATTACAAATAACAACCATATTCTTA 125585 36 100.0 30 .................................... ATTTGACCGTTTATTTAGACGTGCTAAAGT 125651 36 100.0 30 .................................... AGAAATTCATGGCTGAAAAACTTTGGCATA 125717 36 100.0 30 .................................... ATATATGTATTTAAGTACACAAAAGACCCT 125783 36 100.0 30 .................................... GATGAAACACGCATTAAGCGATTAAGTCCG 125849 36 100.0 29 .................................... CGACACAAGAACGTATGCAAGAGTTCAAG 125914 36 100.0 30 .................................... ACAATTCTTCATCCGGTAACTGCTCAAGTG 125980 36 100.0 30 .................................... TACCATCTTAGGATAGGTACTGGTCATGCC 126046 36 100.0 31 .................................... CGTGTCGCTAAACAGACTAGCAAGACCTCAG 126113 36 100.0 30 .................................... AGAAGTCACTCGTGAGAAACACTACTCAAA 126179 36 100.0 30 .................................... CTTTTTTGGCAATCCAACCTGAGAGCCAAG 126245 36 100.0 30 .................................... TGCAAACAAAACAGTGCGATCGCTTGCAAG 126311 36 100.0 30 .................................... AATAATTTATGGTATAGCTTAATATCATTG 126377 36 100.0 30 .................................... CGGACGAAGCAGCTAGGCTACTGCGCTTCG 126443 36 100.0 30 .................................... CGTGCTGTCAGTCAATAAGACATGGGACTA 126509 36 100.0 30 .................................... TGAAAGTCTCACTAGTCCATTAGTGCGGTT 126575 36 100.0 30 .................................... TATTTATTACAAATAACAACCATATTCTTA 126641 36 100.0 30 .................................... ATTTGACCGTTTATTTAGACGTGCTAAAGT 126707 36 100.0 30 .................................... AGAAATTCATGGCTGAAAAACTTTGGCATA 126773 36 100.0 30 .................................... ATATATGTATTTAAGTACACAAAAGCCCCT 126839 36 100.0 30 .................................... GATGAAACACGCATTAAGCGATTAAGTCCG 126905 36 100.0 29 .................................... CGACACAAGAACGTATGCAAGAGTTCAAG 126970 36 100.0 30 .................................... ACAATTCTTCATCCGGTAACTGCTCAAGTG 127036 36 100.0 30 .................................... TACCATCTTAGGATAGGTACTGGTCATGCC 127102 36 100.0 31 .................................... CGTGTCGCTAAACAGACTAGCAAGACCTCAG 127169 36 100.0 30 .................................... AGAAGTCACTCGTGAGAAACACTACTCAAA 127235 36 100.0 30 .................................... CTTTTTTGGCAATCCAACCTGAGAGCCAAG 127301 36 100.0 30 .................................... TGCAAACAAAACAGTGCGATCGCTTGCAAG 127367 36 100.0 30 .................................... AATAATTTATGGTATAGCTTAATATCATTG 127433 36 100.0 30 .................................... TGCATCGAGCACGTTCGAGTTTACCGTTTC 127499 36 100.0 30 .................................... TCTATATCGAGGTCAACTAACAATTATGCT 127565 36 100.0 30 .................................... AATCGTTCAAATTCTGTTTTAGGTACATTT 127631 36 100.0 30 .................................... AATCAATACGACAAGAGTTAAAATGGTCTT 127697 36 100.0 30 .................................... GCTTAGCTGTCCAATCCACGAACGTGGATG 127763 36 100.0 30 .................................... GAGCGCCCTCTATTACTTAACATAAACGGT 127829 36 100.0 30 .................................... CAGATAGCTGTTAAGTCGCCTGGCTGATAA 127895 36 100.0 30 .................................... CAACCAACGGTAACAGCTACTTTTTACAGT 127961 36 100.0 30 .................................... AAATCTCGTAGTTAGTACAGTAGGTTTCAA 128027 36 100.0 30 .................................... ATAACTGAAGGATAGGAGCTTGTAAAGTCT 128093 36 100.0 30 .................................... TAATGCTACATCTCAAAGGATGATCCCAGA 128159 36 100.0 30 .................................... GAAAAAGCATCCATGATAGTGCTTAGACCT 128225 36 100.0 30 .................................... TGGAAACTAAGAAATGCAATAGAGTGGAAG 128291 36 100.0 30 .................................... AAATCTCGTAGTTAGTACAGTAGGTTTCAA 128357 36 100.0 29 .................................... TCATAGCGGATTCGAACCGCTATAAGCCC 128422 36 100.0 29 .................................... CATGATTTACAACCACGCGCTAGACCAAG 128487 36 100.0 30 .................................... AAGTAGTTGATGACCTCTACAATGGTTTAT 128553 36 100.0 30 .................................... ACCTAGAAGCATTTGAGCGTATATTGATTG 128619 36 100.0 30 .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 128685 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 128751 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 63 36 99.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 22893-23145 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDUN010000017.1 Streptococcus thermophilus strain Rico66 Contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 22893 30 100.0 42 .............................. GGAAACGCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 22965 30 100.0 46 .............................. GGAAACTCAAAATATGTTATTACCTTGTATTTCATAATTCAATTAA 23041 30 96.7 45 ........................A..... GGAAACCCACTTGCTGTGTACATCCTACCAGTTCCGCCTATGATG 23116 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 4 30 99.2 45 GATATAAACCTAATTACCTCGAGAGGGGAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCAACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGACTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : CTTTTTTGAAAATTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGACGACATCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //