Array 1 40410-42817 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACZH010000020.1 Vibrio cholerae O395 strain O395_IV NODE_20_length_70383_cov_74.497852, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 40410 28 100.0 33 ............................ CAAATGGCTCAATGCGCGATTGACTACGTTACT 40471 28 100.0 33 ............................ CAATCAACGCACTAGACAACGCCCAAATGAACC 40532 28 100.0 33 ............................ CAACGCTATGCCCGCTAAAATCAGTAAACAAGA 40593 28 100.0 33 ............................ TATATTTCGCTCCCGTCTCGTCAACTAAAATCA 40654 28 100.0 33 ............................ CTTCAAATAAGTAACCAGCCTCTGACGCTGTTA 40715 28 100.0 33 ............................ CACCGCTAATCATGGTGGAACGAACGCCATCAA 40776 28 100.0 33 ............................ TGATTTTGGAAGTAATGGGAACTGAGCGTTAAG 40837 28 100.0 33 ............................ CCAAAAACCTACGCGGTTTTAAATGGATTCGAC 40898 28 100.0 33 ............................ TATCTTGGTTTTGCAGGTTGTTAATCTCAGCGT 40959 28 100.0 33 ............................ TGATTGGTTCCAGTTTATGACAAGAACCAACAC 41020 28 100.0 33 ............................ TACATTGGCAAGACGTTTGTTTTTCGCTGTGTA 41081 28 100.0 33 ............................ CGACTTTTGCATCATCGATGTACGGAACGCTAG 41142 28 100.0 33 ............................ CACTGAGATTGCGTGTCGCCGACTTGCGCTTGC 41203 28 100.0 33 ............................ TAGACTATCAATGTGCGCTTGCAAGTCTTTTAA 41264 28 100.0 33 ............................ TTGATCGCTCTGAAATTGTGACTTGTTTTGTTA 41325 28 100.0 33 ............................ TAGATCTTAATTGTTCGCGTTGAATGGGAAATT 41386 28 100.0 33 ............................ CAGATTGTAGATAAGCAGGAGACTGCCCACCAG 41447 28 100.0 33 ............................ CGGTTGATAAAACGCTGCGTAAGTTTTTCGAAG 41508 28 100.0 33 ............................ TAAAACTTCATAGATTGTTGCCTCCATTGTTTC 41569 28 100.0 33 ............................ TACGTCAACGGACAAACCAAAACCGAATGGAAG 41630 28 100.0 33 ............................ TAAGTAACGCTGCTACTGCCCTGAGCTAGTACC 41691 28 100.0 33 ............................ TACTGGCCGATGAGGTGGACCGCTACGGCTTCA 41752 28 100.0 33 ............................ TCACCCAGCACATTACCACCCATGATCAGCGTT 41813 28 100.0 33 ............................ CGAGTGGGTTTAGGTTGTAGGTTGCACATACGC 41874 28 100.0 33 ............................ TTCGAAAAGCTATTAGGCGGCATAACCACAGTT 41935 28 100.0 33 ............................ CAACAAACCAGCCACTTTGCATTTTGTAGCAGA 41996 28 100.0 33 ............................ TGGAAGTTATTTATATTGGACCTGATTGCACGG 42057 28 100.0 33 ............................ TACTTTGGGCCTTGTTTTATGTGCCAGTGCCCG 42118 28 100.0 33 ............................ CCACTATTTCAATAATCGGCGTAGCTCCGACTG 42179 28 100.0 33 ............................ CGTAATCTTCTTTGTCTGAGTAATCCAAAATAC 42240 28 100.0 33 ............................ TCATGGCAGCGATATTTGTTTTACCCTTCATAC 42301 28 100.0 33 ............................ CATCTGGAACGCACTCAAGCGGCAATCCGAAGT 42362 28 100.0 33 ............................ CAGCAATGTGTTATCCAATGCGAAAGCGCCGTT 42423 28 100.0 33 ............................ TATTTTGCGTATCACCGAAGCGCTGTAGGTTAT 42484 28 100.0 33 ............................ TACGTCCAGCATTACCGCCGCGCCGTGTCGAGT 42545 28 100.0 33 ............................ TCCTCCCTGCTCATATGCCGTTAAAACTTTCTC 42606 28 100.0 33 ............................ TCTGATGCGGCAAGCTCTTTCGCTAGCTCGATT 42667 28 100.0 33 ............................ TACAACATCCATGCAAGCGGCAAAGAATACAAA 42728 28 100.0 33 ............................ CTCTTTAATCGAATTCCATAACGGTGACGTTAA T [42749] 42790 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.3 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACACGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATCTGTTACAACAAGTCTCCTCGGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : AGTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATGGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTAGCTATAAACCTAAACCAGAGGGGATTTGTGACAACAGCTACGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGACTGCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //