Array 1 163174-161026 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSMH01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10405 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163173 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 163112 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 163051 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162990 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 162929 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 162868 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 162807 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162745 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162684 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162623 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162562 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162501 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162440 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162379 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162318 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162257 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162196 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162135 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162074 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162013 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161952 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161891 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161830 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161769 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161707 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161604 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161543 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161482 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161421 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 161360 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 161299 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 161238 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161177 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161116 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161055 29 96.6 0 A............................ | A [161028] ========== ====== ====== ====== ============================= ========================================================================== ================== 35 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180798-179305 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSMH01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10405 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180797 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180736 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180675 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180614 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 180553 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 180492 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180431 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180370 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180309 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 180248 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180187 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 180126 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 180065 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 180004 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 179943 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 179882 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 179820 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179759 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179698 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179637 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179576 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179515 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179454 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179393 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179332 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //