Array 1 284056-285115 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDUY01000001.1 Bifidobacterium dentium JCM 1195 = DSM 20436 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 284056 36 100.0 28 .................................... GAAATACGTCTACGAGCGGTTCCGTTTC 284120 36 100.0 28 .................................... GCATCGAAAGCCTCTGCGAAGACATTCG 284184 36 100.0 28 .................................... GCGCCCCGACCATCCCGACACGAAAGCC 284248 36 100.0 28 .................................... CTTATCGCCGGATTGTTGCGCGGCGAGA 284312 36 100.0 28 .................................... AGTCCTTGCCATTATGGTCGGCTGGCAC 284376 36 100.0 28 .................................... GCTTCGCGACTGTGGAGCGGGTTGCGGA 284440 36 100.0 28 .................................... CGTGTCGGACGTGGACGGCGTGCTCTAC 284504 36 100.0 28 .................................... CTTGTCGGCGTGTTCGCCACGGCTCCGA 284568 36 100.0 28 .................................... TTGCGAGCAGTGCAATGCACGTCGTCTC 284632 36 100.0 28 .................................... TTTCCCGGCATCTTTCCTCTCGTGGTTG 284696 36 100.0 28 .................................... GGCGACGTACACTTCCTTGGCGCACATG 284760 36 100.0 28 .................................... TGTTTTTCCACATCACGCCTTTGCGGCA 284824 36 100.0 28 .................................... ACGAATTCCTTGAAAACCTGATCCGCGC 284888 36 100.0 28 .................................... CGCAGGAACTGTATTCGCTCGTATACCA 284952 36 100.0 28 .................................... AATGGTACGTCCGTTAATGTCTTCCGAT 285016 36 100.0 28 .................................... TCAACCCGGATAATGAGTCGTTGCCGTT 285080 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 17 36 100.0 28 CAAGTTTATCAAGAAGGGTAGAAGCTAATTCCCAGT # Left flank : AGTTCGACTCATCTGGCCTGACGATACCAAGTTCAATAAGCGATTTCGCACAACAATTTGGCTTGTATTGCGAGAAGAAGATCGATGCATTGGAAGTGCCAGAATATCGAGGCCCTTATGAAAAAGGATGAGGACAGTGATGGCATGTGGTGTCTGGTGATGTTCGATCTGCCGGTGAAAACGAGACGGCAACGACGAGAGGCGACAGAGTTCAGAAACATGCTTTTAGGCATGGGCTACAGCATGGTGCAGTATTCCGTATACTCAAGATATACGCCGACCCAATCAGGCAATAGATCGACGGTGATCGCAATAAAAGAGAATCTTCCTCCTGATGGTATTGTTCGAATTCTCCATGTCAGCGATCATCAATGGTCGACCGCATTGCGTTTTTCCAGTTCTAAACAGGTGGAGACTAATGAAACGCCGGACTATTTCACACTTTTTTGAACAGAAGAACCTAATTGAAAGGCGGAGAATGGCCCTTCTTGACAAACATA # Right flank : TACATCGACGAGTTGGGGACCGAGCTCTCCAAGTTTATCCACTATCCCAAGGAGATACGAGCTAATGGAACGCACAGTCACATTTGAAGATGAGGAGTCCGTCAGGGCCTTTTTATTGGTGTCATCATCGGTTACGTCATCATGTCTGTGATTCTGCATCCATTGCATGCGCTGTACTGGATTTCGAGGATCGCAGGCGTCTGCTGCATGTTTTACGGTGTCGGGTCATCCGTGTATCCGGCAAAGGGATTCGATTTCCTCATTCTCGGCGTGGCATCATTCTACATTCCAAAAGGCTGGATTCTCCATGGCATCCCCGTTCGAAGATGCCATGCGGCTTCTCGCCTTTTAATCGGCATTCAGGAAAGATGCGTATCTTCCCAGCGCGGACAGGAGATGGTCCTTCCTCGTTCGTTTCGGATCGATGACGGGCATTCCCTCTCGAATCCGGCTGTAAATGGGTGAGAATGCGTCGTATGTGTCATATGAGAACACGGTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTTTATCAAGAAGGGTAGAAGCTAATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 135705-141081 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDUY01000002.1 Bifidobacterium dentium JCM 1195 = DSM 20436 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 135705 33 100.0 33 ................................. AAGTCGTTGTTCATGTGGACACGCCAATATCCG 135771 33 100.0 35 ................................. GCAGAAGGTCACGATGGATGATGCAACGTTTTACA 135839 33 100.0 33 ................................. CTTAACCGTACTCCGGCCGCGGCTGGCGGACAG 135905 33 100.0 33 ................................. GAGAAAAGGACTAAACAATGGCTACCGTATACA 135971 33 100.0 33 ................................. ATGACACTTCCACCGCCCGTACCATGACGGGAA 136037 33 100.0 34 ................................. CTGCAAATGACGAACGTGCTGTCGGATGAAGCGT 136104 33 100.0 33 ................................. GTCCTCGACCGCGACCATGCCCGAATCGTTTGG 136170 33 100.0 34 ................................. ATTTATTTGCGCCGCACCGACGTGGAACAGCACC 136237 33 100.0 35 ................................. AAGGATTGAGGTGAGCTCGATGAGGCAAATGCCGC 136305 33 100.0 33 ................................. TCGGGGAAGCGGTACGAGCCACGGTGCGCGTGG 136371 33 100.0 33 ................................. CATTCGATGCCGATAGGGTGCCCTGAGTCTGCC 136437 33 100.0 34 ................................. ATAAAGTCCCTGTAAGTGATGGAGGACACGTTAG 136504 33 100.0 33 ................................. TCGGAGGAGCTGCTCGTAGTAGTCTTCGAATCC 136570 33 100.0 34 ................................. TCTCTGCAGCACGCGCATATTCGTGGATCAGCCG 136637 33 100.0 35 ................................. AACGACGGCAGCTCGCACGTGGAATGGATCACCGA 136705 33 100.0 34 ................................. TTGTCCGGCGACATCGGCGGCGGCATCAGCGCCA 136772 33 100.0 34 ................................. ATCCAGACATGCGATTATGTCAATGCCCACACCA 136839 33 100.0 34 ................................. CGCTTTGAATGGCAGGTTCGGGATGCCGAGTCCG 136906 33 100.0 34 ................................. CAAGTCATCCAGCGTTTTGCCAATACGCTCGAAT 136973 33 100.0 34 ................................. TACAAGCATAGGGGGTCTATCACCCCTAATCCGT 137040 33 100.0 32 ................................. CAGCTCGGCGACGCGGACGGCCAGATGCTCAT 137105 33 100.0 34 ................................. CCCGATTGGGAGATGAGGATCCGTGGCCGCGTCA 137172 33 100.0 34 ................................. TCCGGCCCCCAGCCGAGCTCTTCCCACGCCATTT 137239 33 100.0 34 ................................. TCACCCCGGTAGGCCCAGTCGATGGGCAGTTCCC 137306 33 97.0 35 .............G................... ACTGCGACGGCTTGCGCTTGCATGCACAGTAACCC 137374 33 100.0 34 ................................. GATTGCCTTGTGTTGGCATTCGTCGTTGGATGAT 137441 33 100.0 34 ................................. CATTAAGAGTGAAGTTGCCAAGACGTATGCGACC 137508 33 100.0 34 ................................. GACATGCTGGGCCATGATATAACCGCCTTAAAAA 137575 33 100.0 34 ................................. ACATCCACGAGCAACTGGCGCGTCGTATATAAAA 137642 33 100.0 35 ................................. TGGTCGGCGGTCATCATCAGTCTTATCGGCGGTGG 137710 33 100.0 33 ................................. GGCGTGTACGCCGTCAGATAGGCCGTCGCACCC 137776 33 100.0 33 ................................. ACAAACCCATTGCCGAAACTGCTCAACACGACA 137842 33 100.0 35 ................................. ATGATTTGGAGCCTAAAAAATCAAAAGTATTGTAC 137910 33 100.0 33 ................................. GATGTGAAATTCGACGTGGACCGGACCAGCTTC 137976 33 100.0 33 ................................. GCAACCTTACGCGCCGCCATCATGTGCAGTCGA 138042 33 100.0 34 ................................. GCCTCACGCGAACGAATAGCATCGGCGGAGGCCG 138109 33 100.0 33 ................................. ACCAAATACGTGTTTAAGGTGCAAGATGATTGC 138175 33 100.0 34 ................................. CCGTCACCGATGCGGAAGTGGAAGCCTCCGCCAA 138242 33 100.0 34 ................................. TTCTTTCTTATTACTACTACTCCTACTACTACTA 138309 33 100.0 34 ................................. ACCATGCGTTTGCAGTCCTGCTTGCGCTTGTAGA 138376 33 100.0 33 ................................. AAATGCCGGTATCTGCCCGGGATATGGAAGTTG 138442 33 100.0 34 ................................. CTGGTGCCGTCAATCGGATTGACCGGCGAATTGG 138509 33 100.0 35 ................................. ACCTTATCGTAGGCTACGGGGTCGTTGATCAGCCA 138577 33 100.0 33 ................................. CTGCTGGCCATATGCCTGGAATCGCGTGGGTTG 138643 33 100.0 34 ................................. CTCGATTTCGGTTTGCATGTGGGTCAGGATCCGG 138710 33 100.0 34 ................................. CTCAACAGGCTGACCATGGCGTCGGTGGTCGCGT 138777 33 100.0 33 ................................. TCATACCGTGATACGCTTACCGTACTCGGCTAC 138843 33 100.0 33 ................................. GTTGAGCGTCCGTAACGCCATGGTCGCCTCCCC 138909 33 100.0 36 ................................. ACTGCTTGCGGTGGCTGTCGAGTCTTGCGTGGTGGC 138978 33 100.0 34 ................................. GCCTTGACCTCACGCGACATGAAATCGGCGTAGG 139045 33 100.0 33 ................................. ACCAACGAACAGGTGAGCGCGACCCTGTTCGCC 139111 33 100.0 34 ................................. CAGGATGGATGTCAATTCGATGAGGCAGATGCCG 139178 33 100.0 34 ................................. CAACCATTTGCGGAACGTTGGTCATATTATCCCC 139245 33 100.0 34 ................................. TTATGAAAGGTGTGAACATGAGCAGACGGAACAA 139312 33 100.0 34 ................................. GGGTGCGGCGAATGCGATCGGTGCGGCCGCCACC 139379 33 100.0 34 ................................. CTATCCGCAAATCGGCTCGAAAGAGTGCGTACCC 139446 33 100.0 33 ................................. GCGCATGGTGCGGCCCAGGTAAAAGACGAACAT 139512 33 100.0 34 ................................. GTGGACGGCTCGGGCGCTGATGTCCACAAGCTGG 139579 33 100.0 33 ................................. TGGTTGGTCTTGCGTCTGCGTCGAGTCCACGTC 139645 33 100.0 33 ................................. CTCCGGACAGGTCGAACTACGGAGATACATTTC 139711 33 100.0 35 ................................. AATAACTGATGCCGGACAGTGGCTCGTTGTCGCCG 139779 33 100.0 35 ................................. ATTGGCCAGCACGAACCTTTCGAACCAGCAGACCA 139847 33 100.0 35 ................................. AAGCCAAAATAGTCGGCAAACCACCATACGGTTAT 139915 33 100.0 34 ................................. TCCGTCGAGAGTGTTCCGTGATCAGGTCGGCGTG 139982 33 100.0 34 ................................. ATGGCAAAGTCCCTGCATGCGCGTCTCGTGGCCT 140049 33 100.0 33 ................................. ACGTAATCGCACGTCTGGACGAAATAATACCAA 140115 33 100.0 33 ................................. GCTTTCGCGCCGACGGTCAAGATCACCCGCAAA 140181 33 100.0 33 ................................. TACACGGCAAGCGTCGGCATCCGCGGCGTATCA 140247 33 100.0 33 ................................. ACGTGATGACGCAGGTCGCAGTCGATGACATGC 140313 33 100.0 33 ................................. GACAAGGACGGGTATTCGCCGCCATCAGGCGGC 140379 33 100.0 34 ................................. CTCACCGGCGTCAACGGCACGGGGAGCAAGACAT 140446 33 100.0 33 ................................. CTGTCCGGCGACATCGGCGGAGGCATCAGCGCC 140512 33 100.0 33 ................................. CGATTTGGAACGTGAGATAGCGGAGAACATCAC 140578 33 100.0 35 ................................. TCATGTTCCATTGCCCTGAGGTTGAGGATAGCCCA 140646 33 100.0 35 ................................. ATGAGCCGTGAAGTCAAGGCGAAAGTGCATGGAGG 140714 33 100.0 34 ................................. ATGCACGCGCACACCGACATCCGCAGGGAGCAAT T [140740] 140782 33 100.0 33 ................................. ACCGACGTGGCATGCGGCAACGACTACACTCTT 140848 33 97.0 34 ......T.......................... TTCCGATCGAAGAGTCCGCTGTCGTTCTCGGCGA 140915 33 100.0 35 ................................. GAGGACAGCCTGGAGGGCTGCTACGCGCTCATGCA 140983 33 100.0 34 ................................. ACGCCGAGCTCCCGGTCCCCCGTCGGCCCTGGTG 141050 32 84.8 0 ....................T.-A....A...C | ========== ====== ====== ====== ================================= ==================================== ================== 81 33 99.7 34 GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Left flank : CTGCGGGGAAGAGACGGTTGCGTAACGTTGCGAAGACATGTATGAAATATGGGCAACGGGTGCAGAATAGCGTATTCGAGTGCTCGGTCACTTCATCGGATTATCTAACTTTAGTAAATGAAGTGATGAAAATCATGGATCAAGAAAAGGATAGCCTGCGCTTATATAAATTAGGGACAAAATATTCTGAGAAGATTGAACATTATGGTGTACAGCGGCATCTTCCTGTAGATGATGTGATGATGATTTAGACGCCGAGGCCTGTCGTTGTGCGAAGTGGAAGCTCTCATCGAATAAGGCAAGCTTCGCACCTGGATGGAACTTGGAATCGAAAAGTAAGTCGATTTTCCTTGGCTGTTTGATAATTTCAGAGAGAAGAATCGTTATTATTTTTTGGTAGAGTGATTAGAATAACGGGTTTTGACTTCAAACCCTGCTACTCTTGAACTTGTACGAAGGATAGATGTTCCACAATGTGAAACATGCTGTCCATCTGTGCA # Right flank : CATGATGGGAGCGGCCATGGGATTGCGTGAACGGCGTGAGCGTTGCGGGTTGACGTTGCTCCAGTTGGATGCGTTGACCGGTATCGCCTACACGCGGTTGAGCACGTTGGAGTGCAATGCGTCCGAGGCTCGCAACATGTATTTGGGTACGGCTCGGCGGATTGCCGACGCGTTGCATTGCAACGTGTTGGACTTGTATCCGGATGAGGATGCGTGGCGTGGCGGCGTGTCAGCCGGCGTGACCGGGTTGAGGAGGATTCGTAGGGAACGGCATTTGACGCAGCGGATGCTGTCAGCCTTGACGGGTATCCCCCAGCCTAATATTTCTTGGTTCGAGACCGGGTATCGTCCTGTGTCTCAAATGTATTTGGATACTGCGCGACGCCTGTCGGAGGCGTTGCAATGTGACCCTGTTGATTTTCTTATTGATTGAAAGGATATTGTGATGAAGGCTGAGGTTGTTATTGTTTCACGGTTGGAGCGCCATGGCGGGACGATGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //