Array 1 9642-11077 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYYV01000023.1 Lentilactobacillus kefiri DSM 20587 = JCM 5818 strain DSM 20587 NODE_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9642 29 96.6 33 ............................C AATCACATTCCATTTATGCTCCACACGTTTGTG 9704 29 100.0 32 ............................. AACAACACAACCATGACTGGGTTTATTACAAC 9765 29 100.0 32 ............................. GTATGTATGGCACTGTTGATAATGGTTATCGA 9826 29 100.0 32 ............................. TGGCTAAAGGTCGATATAAGCTCGCTAGACGA 9887 29 100.0 33 ............................. ATGCTGGACAGTCAGTCTGGCACTCAATCACTA 9949 29 100.0 32 ............................. AATAACATCGGCATACTTTGGGTCTATTTCCA 10010 29 96.6 32 ............................C GAGTGGAACATTGAAGACCACCAAGGCGGTAT 10071 29 100.0 33 ............................. TGGCGACGGGCAATGAAACAATCTAATCAGTTA 10133 29 100.0 33 ............................. TAACGGGATGGGCTTCCGACATAATTTATTTAA 10195 29 100.0 32 ............................. AATGCTGTTAGTGGTAAAACAGCAAAACCAAT 10256 29 96.6 32 ............................C AATATCGTGCGTACCGGAGGCGATCGCATAGA 10317 29 96.6 32 ............................C AAAATCCAAGCAAAAGCTCCTAAATACGAATA 10378 29 100.0 32 ............................. TATCGTTGGCGAAACCCGATATAAGGCTGCCA 10439 29 100.0 33 ............................. ATTTAATTGGTACATTTGGTGATGTTATTTATG 10501 29 100.0 33 ............................. CAACATAAGCGGTTTGACCTGTAAAGAGAACTG 10563 29 100.0 32 ............................. ACATGCACAGATAACCATGGTACACTAGACCG 10624 29 100.0 32 ............................. GTTATATAAAATTGTCGGGCTTATTCCTATGG 10685 29 100.0 32 ............................. TTTTACGTTCCGATTCTTGAACCCCACGTTGA 10746 29 100.0 32 ............................. GTCTCTTTCATAATTTCCTCCTAATTCTTTTC 10807 29 100.0 32 ............................. GAACTACCTCGTATCAATCTATATACTAACCC 10868 29 100.0 32 ............................. GCCTAAAATATTTTTAAAGTATAAAAAACTAA 10929 29 100.0 32 ............................. TTTGTTTATAGTTGCTGTCTTAGGAATGAGAC 10990 29 100.0 32 ............................. TATTAAACCCGTGCAAAGTCTTGTGATAACGC 11051 27 86.2 0 ............T.....A..--...... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.9 32 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : GCAACTGATAAAATTATTTCTATTGGCGCAGTCAAAAAAGTTGAAAATGGTGAAATTGATCAATTTTATAAACTTATTCAGGTTAACGATAACATTCAAACGAAAATAACGACCTTAACAGGGATTTCTTCTGACTTGCTAAGGACAAGGGGAATTGATTTGGATTTAGCATTGCAACAATTAAAAAAGTTTATTGGCCAATCAGTCGTTGTGGGGTATAATTTGCGATTTGATCAAGAATTTCTGTCCTATGGTTTCAAGAAAATTGGTCAACCAGATCTATCCAACCAAATGGTAGATCTAATGCCAGTTGTAAAAAAAACAAATAAATTTCTTGATAATTATCGTTTAAGTACGGTACTTAAAGAATACTCAGTCAGAAATTCAAAACCACATCATGCATTATCTGATGCTCAAGCAACCCTTGAATTGGAGACCAAACTCATAGAAAATGGACATTTACTAATTTAGAAATGCTGTTATGGCGGGAATCGTTTAGT # Right flank : TTTACCTAAAGCCAATTCAAGGCTTTTGACTACTGGATTATGAATTAAGCAACGGGGTTATCATTTAAAGATGGTGGTGCCGTAATAGATCAAAATAGAATTCGTCATAAGTGATTGGGCTAATTTAACCAGAAAGAGGTTGTTTGTAGTTATGATGGAATGTTTTTCTCCAGAAACGATTGATCACTTGAAATATTATGTTTATACATATGCTGATCCAACAAATCATGAAATCTTTTATATAGGGAAAGGGACCGGTAATCGAATCTTTGCCCACGAAAAAGACGCTGCCCAGGATCGTTATGAAAGTAATAAAATTGAACGCATTAACCAATTAACTCAACACGGCCAGCAACCAGAGCTACACATTATTCGTTATGGACTTAGCGAAACCGAAGCCTTTGTTTTAGAAGCGGGGTTAATCCGGACATTTCTCTATTGTCATCCACATAGCTATTTTAATTCAGATATTGATTTGACTAATAAAGTAGCGGGCCATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 57435-56685 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYYV01000041.1 Lentilactobacillus kefiri DSM 20587 = JCM 5818 strain DSM 20587 NODE_50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 57434 36 100.0 30 .................................... CTGATGATCGACCATTTGACGTTCAAAATC 57368 36 100.0 30 .................................... CTGTGATGTGGTCGTTACTGACCACCATTC 57302 36 100.0 30 .................................... ACAGATCAATATACACGGCGGCGCTTGAAA 57236 36 100.0 30 .................................... CGATAATTTGCGGATGTTTGAAGCTTGGAT 57170 36 100.0 30 .................................... GATTCCGGTGGTCTTCAATAAGTCTGACAT 57104 36 94.4 30 ..........A....................G.... GAGCGGCGAAGAATATTTGCTCACATATCC 57038 36 100.0 30 .................................... AATGTCGGCTTTGTTGATTACTTTATTGAT 56972 36 100.0 30 .................................... GTTTACTGATGAGTCTTCGTTTTACTGCCC 56906 36 97.2 30 .................................T.. TGACCAATCTCAAGGCTCAGAACGCTTGTG 56840 36 63.9 15 ..................CC.CTG.C.AAC.G.GAA TTGCCCATATTGCCA TGG [56823] Deletion [56790] 56786 36 97.2 30 ..................G................. ATAGCATGTGTTATGTTTGACTATCTTGCT 56720 36 83.3 0 ........................G..C....GTTT | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 94.7 29 GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Left flank : AAACGGAGGAGTTAGTGAAAAATATAATTCGAATATTCTCAAACAATTGGAAACTGTTCTGACGGATGATCAACGAAAATCAATCACGGATATCAATAACCAGTTGTATACGCTGATTCAACAGTGTCTCTTCATGATTGATTTGCCACTGGAAGTTACCTATGATTGGGATCTTAAAAAGCTGTTTAAGTACTGTAAGATTCACTTTAATTCGCAAACCATGCAGAACCCATATGCTATAATTGAATCAATTATCAAAATCCATTTAGAGTGTGGATTGAAGTCGGCTGTTGGCTTAACTAATGTCGCTCATTATCTTAATCAGCAGCAGATAAATGACTTGTCCAAGCTTGTAAGTTCCACTGGAATCTCGACAATATTAGTAGCGTTCACAGATTTGAAGTCACAGGAGCTTTATACAAATTGTGACTTCTACTACATTGACGAGGACTTTGTTGATTGGCATGCATAACTTATTAAAATCGGATTATAAAAAAGCG # Right flank : TAGCTCGCTTGGAGGATCTCCCCAGAATTTCGTACGAAATTTTATAAACGATCCACAACAAATAACGAGTTCTTAGATTAGCAGTTAGCTGATCCAAGAACTCGTTTTGTTATCTCTATTTAATCAATTCCTTCGCCAAAGCATATCCCAACTTCTGGGCAGTTTGTGGTGTTGGATGAATTTCGTGATCCTCTAAAGTGACGTCCTTGTTTTCGTTGGTAATGATATGCGGTGCAAATTGGTTGAAGTTAACAACTTTGGCACCCAGAGACTTGTACGCCTTGGCTTCGGCGACTCGTAAGTCGTGGTAAGTGTAGCCATACATGTCACTCATGCTATCGCGGTTCATGCCGTTCAAGTCATAACGAGAGATTGGCAAGATACCGTAAACTTTAGCGGATGGGTTCAACTTCTTAATGACTCGGATATTGTAACGTAAGTGACGAATGACGTTCTTCAAACTCCCGGAATTCGAGTAGCTTGTGTAGTCATTGGTCCCG # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [26-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //