Array 1 29200-27577 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJQT01000009.1 Lacticaseibacillus rhamnosus strain LR-CVC contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 29199 36 100.0 30 .................................... AAGAAACGATCCCGAGTTTCTGGATTGCTT 29133 36 100.0 30 .................................... TCATCAGTATTCATGGAAATATAGGATGCT 29067 36 100.0 30 .................................... ATCATCGAATCTTTGGGGACCTTACCACTT 29001 36 100.0 30 .................................... GATTGTTTCGGTTGCTTCTGTGATGCCACC 28935 36 100.0 30 .................................... ATGACTGGTTGCCGGTAAGCGATGAGTTCA 28869 36 100.0 30 .................................... CATACTTGTATGAGCACTTTGACTTGTCAA 28803 36 97.2 30 ....................T............... ACCGTTTGTGTTGCATGAATATGATCACTA 28737 36 100.0 30 .................................... AGGTGCTATGCCGCTTGGCATGACGATTGA 28671 36 100.0 30 .................................... AATAATATTGTGCCAAAAGGTAGTATTCTA 28605 36 100.0 30 .................................... TCCAAGGGCATTCCAGATTGCAGAAGCCCC 28539 36 100.0 30 .................................... GGGTGATGCTGACAAGATCAAGACGGCTGT 28473 36 100.0 30 .................................... CGCCTTACGGGCGACAGCTAGGCCTATGGG 28407 36 100.0 30 .................................... AGATCGAGCATTACGGCTTGCAAGACTGCG 28341 36 100.0 30 .................................... ACAGTTGAGAAAAGAAAATACGCATTTAAA 28275 36 100.0 30 .................................... AAAAACACAAATGGCCGCTGCCACCTTATG 28209 36 100.0 30 .................................... AAAAAAGCCGCGGAACTTCTCGGGCTAGAC 28143 36 100.0 30 .................................... CACAGTGCCATTCCACAAACCCGACAGAAA 28077 36 100.0 30 .................................... CGAGCTTGCGGCCAATATCAAGCTATATGC 28011 36 100.0 30 .................................... GTGTGATCATCATTACCTCTCTGCCACTAA 27945 36 100.0 30 .................................... ATCGCATACTTCATGATGATTGATGCCAGT 27879 36 100.0 30 .................................... CTGTGTTCTCACGTGTCAACAATTATTTCA 27813 36 100.0 30 .................................... TTGTGGTGCCAAAACGGGTTGTTGTCGAGA 27747 36 97.2 30 ...................................G TTTCAGCAAATATGACGTCTAACATGCCTC 27681 36 94.4 30 ..................................AT ACTTGGAAAAGTTGCTATGCAGTTTGAATA 27615 36 83.3 0 .......................AA.A....G..AA | T,CA [27580,27586] ========== ====== ====== ====== ==================================== ============================== ================== 25 36 98.9 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : GAGCTGGATTTGGACAAGTTATTCCAACGCTTGATCATCAAGAAGGTAAGTCAATTGATAGAGGATCGGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAAGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTAAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTACCAACATCAGTCATTATTTAGATGTTGATAGTTTGAACAAGCTGTTAGATCAGGTTAAGGAAACATCGTTAGAATTACTTCTCATTGAATTTTCGGATGTCGAACGTAGAAAGTTTTTTGAGAGGTGCCAGTATATCTATATTGACAAAGATTTCATGGATAGCCGTGAACTGATTGATTAAGAGACTGTGTGAAAACACCG # Right flank : CCTCACCCCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCCCCAGCCTTTTACACTGATCTCAAAGAAATCCGTCACATGTATCAACAGGCGTTCAAATCCATTTACGACAAATATCAAGATCGGGAAACCAACCCCTACTGTGAATCGTTGGAAAGCTTACAGAAAAAAGTTCAAACGGCATAACAATGCCTTCTTCTTTATAATCGTTAAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCGCAAAAATTCGGCAGTCCGTATTTCACCATTTTTAATCTTGCCGTCTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCTAAATTGGTACATTTGTATCGTAAAGTCGGCTTTCAGCAGCTGCCAGATCGGGAAACAACGATTAATGAGCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //