Array 1 54421-52773 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXIO01000011.1 Colwellia sp. RSH04 RSH04_scaffold11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 54420 28 100.0 32 ............................ ATTAGTACCGTTTAAACCGTTAATACCATTAA 54360 28 100.0 32 ............................ AGCTGGCGACTCTTACACGTTAACAGAATTAG 54300 28 100.0 32 ............................ TAATCTTTTAGTTGGTTGTCGCATAACTAATA 54240 28 100.0 32 ............................ TTTACCGCGTCAAGTGCTGATTTATGCCCTAG 54180 28 100.0 32 ............................ TAGTATTTATGCTCGCTATACGTTCTAGCATT 54120 28 100.0 32 ............................ TTCTTTGCGATGTTCTATTTCTTGTGCATCAA 54060 28 100.0 32 ............................ GCCTAGCAACACAACGCTTGCGACTTTCCACA 54000 28 100.0 32 ............................ GTGATGCGCTGGTACGGACTGATCGTCATCGT 53940 28 100.0 32 ............................ TTTCTTCTATTTCTTCCCCGCTCAGCCCTTCT 53880 28 100.0 32 ............................ TAGTGGCTAAATGCCGTTTGCTTTCCGTGCCC 53820 28 100.0 32 ............................ TTTTACGTCTTTATTCTCAATCCAGTCGCTTA 53760 28 100.0 32 ............................ GCTAGTTCCATCCCCTAAAAATTGAACGCCAT 53700 28 100.0 32 ............................ TCTAAGCTCAATTTCATTGCTATTGATGGTCT 53640 28 100.0 32 ............................ TGTACCGTATTGTGCTATGCCTAGCTCTTTTA 53580 28 100.0 32 ............................ TGCAAAGCTAATTATTAAAGTAAAAATCAACT 53520 28 100.0 32 ............................ TCTTGAATTTCTTGGTTTTCTGCTTTGTCTAG 53460 28 100.0 32 ............................ GCCAACAAGCGCAGAATAAAGATTGTTAATCG 53400 28 100.0 32 ............................ GCATTGATATAAACACCCGCATCAATATCAAC 53340 28 100.0 32 ............................ TAACAGGTTAGGAACAAGTGACACTGTATTTG 53280 28 100.0 32 ............................ ACTACAAATATGACGGCGTTTGTTGGCGAGTT 53220 28 100.0 32 ............................ GCAATCAACAAAAGCCTGAACGATTAGTTCGT 53160 28 100.0 32 ............................ TTATGGTAATGCTCGATGATTATGAAGTTAAA 53100 28 100.0 32 ............................ TAAAGCGGCTAACGCAGTTCCAACTAAGCCAA 53040 28 100.0 32 ............................ TTTACGCACAACGCTTATAGAGGAGTGTAGAA 52980 28 100.0 32 ............................ TCTTGTTCGTGCTTAAGGATTAATTATGCCTC 52920 28 100.0 32 ............................ GCAATAGTTAAGATACCAAAACCGACTTTAGC 52860 28 100.0 32 ............................ TTAAAGGAGTTGAGCTACAGCACCAGATTGAA 52800 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 28 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TAGCCGAAAGCAGTTTGCAACAAATCTTGCTCGTTTAGCAAGGCGTAGAGCGAAACGACATGAGGAAACCTTTGAACAAGCATTACAACATTATGCAAGTTTTGAAGATAAGCAAACTAAACTACCTTACATCAATGCCAAAAGTTTAACCAAAGACGAACAATTTAAGTTTTTCATTGATTGTGAGTTAAGTAAGCAAGTGAAACATGGTGACTTTAATTGTTATGGCTTAAGTAAAAAAAGTGAAAATGAAAAAGATAATCAAGCTACAGTACCTTGGTTTTAATTTACGTTAATTGATTTTGAATAATGTGAAAAACTTAAACCCGCTGAGTGCGGCGGGTTTATTTTTTAGGAAAACTAATGTTTACCCTAAAAAAATAGCTCTTTAAAAATTTAGTTAACTATTAATAAGTTACAAAGCAGCTAAAAATTTAGGTAAAAAAGCCTAAAACCTCTTAGCTACTTGTTGTAACTTATTTTTTTACTGATAAGCTATT # Right flank : ATTAAAGAGCATAATAAAAACCAAGATGCGATGTTCACTGCCGCAGTTATTATTTATTGCTCATGTCTAAGGCAGTAGTGTCTTTTACAAGCCTATGCAGTTTTACAACATTCAAGAGTGTTAGTGTTAATTCATGTAGACATATTCATTGGCTTTTGTGCTTTCGTCGCTTATGCTAACTATCATGTTTAGCCCACTAATAAGGGCAGTGTTTTTTTAATCAAGAGGTGAAGTATATGGATAAAGCATTACAAACGATGATTGAAAATATGCCAGTAAAAACAGGTAAAAAATTAGAAGATTGGCTAGAAATATTAAAAACGAAAAGTTTTGAAAAACATTCCTTAGCAGTTAAGTTTTTGAAAACCGAGTATGGAGTGACACATGGGTTTGCAAATACAATCGTCACCTTGTCAAAAGAAAAAAGTGACAGTCCTGAAGATTTAGTTTTAAATCAATACAGCGGCAAAGAATCATTAAAACCAATTTATGATTTGCTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //