Array 1 654293-654080 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVG01000001.1 Streptomyces alanosinicus strain JCM 4714 sequence001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 654292 30 96.7 31 .............................G GCACGCCGCGCGCCTGAACGAGGCACGATCC 654231 30 100.0 31 .............................. ACCTGATCAAGGTGGCCGACGCGTGCAAGTC 654170 30 96.7 31 .............................A ACGTTGCGAAGCCGGCCGCGCCCTGGGAGCC 654109 30 93.3 0 .................C...T........ | ========== ====== ====== ====== ============================== =============================== ================== 4 30 96.7 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : CCACGAGGAGCCCATCTGGTGACGGTCATCATCCTCGCCAACTGCCCTCCTGGCCTGCGTGGATTCCTCACCCGCTGGCTTCTGGAAATTTCTCCCGGCGTCTTCCTCGGCGCCCCTACCACCCGAGTGCGCGACATCCTCTGGGAGGAAGTCCGCCAGTACCGTGGCAAGGGGCGTGCCCTGCTCGCCTACCAGGCCAACCACGAACAAGGCTTCACCTTCGCCACCCACGAACACGCCTGGCAACCCACCGACCACGAAGGCCTCACCCTCCTGCACCGGCCTTCTCCACAAGCACCTCTTGTGGCTGACACCACTCCTCCCAGCCCACCAGGCCAAGGCTGGAGCAAGGCAGCCAAGAGACGACGCTTCGGAAACCGGTGAAACAACTACGCCGTGACTGTTCACCACCCGCCAACCTACTGGCGGGTGGAATGTCCGTTTCCGTGGAAGCAATCAAAACCCGCGTGCTGGACGCCTAAAAGCCCAGTTCACGGCCT # Right flank : GAAGCCACCTGGGTCAAGCTACGGCCCCCTCCGACGGATGCCTTTGTCGTGGTTCACCCGCCCCGTTCCTGTCATACATCTCGGTGCTGTCCGCGTACGCAGCCTCTCTGGTAGGGCCTGTGGCAGATGGCTGATTCCCGCGAGCGCCTGTGGACGGCCTGTTGTGGTCTCCGTACGCTGGGTAGCTGGTCTGGGCAAAGTTCACAGGGGGGCGACGTATGGGTGGTACGTGGGACGCGGATCCGCAGGCGCGGCTGGCCCGGCGCATCGGCCCCTCGCCGGCCGAGTTGGGTACGACTGGGGGCAGGGACGGTTGTCCGGACATCTGGGAACTCGACAACGGCGACTTCGCGGTCATCGGCCGTGACCTTACGGCGGTCTATTCCGAGGGGCTGCCCGATGATGTGGTGATCGGCGGCGGGGAACGCCTCGTGGTCATCCCACGTGTCACTCTGCTGGCTGCCCAAAGGCACATTCCGGATGCGTGACCTTCTTGGCAC # Questionable array : NO Score: 3.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.10,-13.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 665355-664898 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVG01000001.1 Streptomyces alanosinicus strain JCM 4714 sequence001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 665354 30 100.0 31 .............................. ACTGGTACACCGCGATCAACGACCTCGACCA 665293 30 96.7 31 .............................A GCTTCTGGGTCTACGACGAACGCCTCGTGAT 665232 30 100.0 31 .............................. GGTATTCGACCGTGCGCGTGGTGGTGGTCAT 665171 30 83.3 31 .............CT...........TG.A TCGCCCAGATGATCGCCCTCAAGGCCGTCGG 665110 30 83.3 30 .............CT..A.....T.....T GCGCGGTGGAACCTTGGCCACCGAGATGTT 665050 30 76.7 28 .......T.A...CG....A...A.....C TCACAGCTCCGGTCAACACCAGTTCCGG 664992 30 80.0 31 ..A..T......A..A...A.........A TCTCCAGCGAATGTGTGACGACAGCGGCTTC TTCC [664985] 664927 30 90.0 0 T.............T..............T | ========== ====== ====== ====== ============================== =============================== ================== 8 30 88.8 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CGAGCCGGTACTCGATGCACTGGAGACCTCACGGGCCGCGTACAAGATCGGCAACAGCGCGACCGCGCTCGGCGTGATCCTCACCGTGTTCGAGCGGCACCTGGGTGAACTGGCCGAGGGTTGGTTCGACGCGGTCTCCGGGGAGCCCAGTCGGGCGGGGACGGCGCCGCTGGAGACGGTGTTCGGGGTGCGGGACGTGCCGGTGGAGACGGCGGCTGCGATGCGGGCGGCCATCGACCGGATGGTGCAGGACGGCACCGTTCCGGTAGACGAGCCGTGGCGCGCCTTGGAAATTCTGATCGGCGGGTTGGCAGTGTGACCGAAGCAAGCAGCGCAGCGGGTCGCCGTACTAGCGTGCTAGGTGGAGAAGACCCGACCAGGGCCAGGGGGCACGTTTACTCCCGGCGAGCGAGCCAATTGATCGAGAGGGTGAATTGTCCGTTTCTCTGAAAGTGATGACGATCTACTCACCGGCCACGTAAATCCCCAGCTCGCGACCT # Right flank : GGGGATCCGCGCCGCACGCGTCCGTGTGAACGTGCTCCTCGCGTCTGCGGGGCTGGGAAGTAGCTGCGGGTGGACGTCTTTCAGAGGCGCAGCATGGCGGCCGCGGGCGCCGTCCCCACCAGAACTGAAGGTCTGCTCTGCATGCTTCTGGTCCAACTGGGGCTCTGCGCCGCAAGCGTTAACTCGCCCTCGGATAACGGGACTTAGCCCGCAAGGAGCGTCGGGATCCGCTACGGTCAAGACAAGAAGGGCCGAGTCTGTGCACCCGCGGCAAACGAGACACAGGCTCGGCCTGTCCGAGCAGCTGAAGCAACCCAGAACAGGAGCGACTCTACCTGTGAGTAGCAGCAACGGCATGTTTCAGGAACGAGCGGAGAGTTCGCGGCACCGGCAGAGCCTCTGGTACGGCCTGGTGCTAGCCCTCATCAACACTTGCCCGTCTTCTCCCTCTCCAACTGCACCGTTGGTGTGGGGAGCGGTCGTGGTGATCGTGGTCTTGG # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.44, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 42041-39606 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVG01000026.1 Streptomyces alanosinicus strain JCM 4714 sequence026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 42040 37 100.0 36 ..................................... ACGAAGCCCTCGGTGTCCTCCCGCAGGGCCTTCGGG 41967 37 100.0 37 ..................................... GCGCTGATCGCCTTCGCGCAGGCTCGGGGGATCGCGC 41893 37 100.0 36 ..................................... GCCGTACGGGCGCGGCATGCTCGATCAGGTCCGCGG 41820 37 100.0 36 ..................................... CCCGCTGTTCGTCGGCCTCGCCGTCATGCTGTGCGC 41747 37 100.0 35 ..................................... GCGGATTCGCCCACCGGGCCGGGCGGAACGTGGAG 41675 37 100.0 35 ..................................... GACCTGAGCGCGATGTCGCGCAACGTCCTGGACTA 41603 37 100.0 35 ..................................... CTCGCGGGTGCGTCCGCTGCCGATGCCGGGCCGGA 41531 37 100.0 34 ..................................... CTCAGCGCCACGAGACACCCCCGATCGCGAGGGC 41460 37 100.0 36 ..................................... CCCGGCACCGCGACCACCGTCAGCGCGGGTGTGGCC 41387 37 100.0 36 ..................................... CATTCGCCGTGCCACTCGGAAAACGGGTGCATGAGG 41314 37 100.0 36 ..................................... TCGATGGCGGCGCGCTACTGGTCGAGCACACGACCA 41241 37 97.3 36 ........T............................ CGGTAGACCCTCGTGACCCAGGTCGGGCGCTGTGTG 41168 37 100.0 36 ..................................... TGTCAAGGTGGACTCGCTGTGGGAGGCCCCCTAGCA 41095 37 100.0 36 ..................................... GTCCAGAACGCCGTGTGGCAGCACCGCATTGCCCAG 41022 37 100.0 34 ..................................... GGCGGGTTGGTCATCTTGTCGGCACCGGACTGCA 40951 37 100.0 36 ..................................... CAGGCGTCGGTCTCCTCCACGACGCGGATCTGCTGG 40878 37 97.3 36 .......................T............. TTCGACGTCCTCGCCTCGGACGACCGCGCGGAGGTG 40805 37 100.0 36 ..................................... CCTGATAGCTGGGTGCATGGCCAGGCAGGGCCGGTG 40732 37 100.0 36 ..................................... ATCGACGGCTGGGACTCGGTGGCGACGAGCTACCCC 40659 37 97.3 35 .................A................... GCCGTGCTGGTGATGCGCAGCGTCTACGTGACCGG 40587 37 97.3 35 .................A................... TCCCGCAGCGCGACGTGCAGCGGCCAGACCCAGTC 40515 37 97.3 37 .................A................... CTCCACTGCGTCGCGGGCCGCTCGCGCACCCCCGCCG 40441 37 97.3 36 .................A................... ACTTTGTACTGGTGGTGCAGGTGAGACTACGCCCTG 40368 37 91.9 37 .................A...C....G.......... TTCGGGTGGGACGACCGCGCCAACCCTGCCGACGCCC 40294 37 97.3 34 ........T............................ GCGTGACCAGGACCAGCACGACGACCAGGCAGAC 40223 37 97.3 34 ..........................G.......... GCAGAGCTGCGCCGCATCACGTCGATGCCGGAGG 40152 37 97.3 36 .................A................... GCCACACCACCCGTGCCCGTGCCAGTGAACCCGGTG 40079 37 100.0 36 ..................................... CGTGCCCGGTCCTGTCGACCACGGCACGAGCACCAC 40006 37 100.0 35 ..................................... GAGGACAGCACCATCAGCAGCAGCCCGAGCCGGTC 39934 37 100.0 36 ..................................... GCTCTGGCCGTGCTGCGGATCGTGGAGAGCGCGAAC 39861 37 97.3 36 .................A................... GACTCCGGGCCCGCGGCGATGGCCGCGCTGGTGCAG 39788 37 97.3 37 .................A................... GTGAGAAGCAGGCGGACACCGATCGGGCGGAGGGAGA 39714 37 97.3 35 ........T............................ CTCGGATACCAGACCGTCGCCCAGTCGCTGCCCGA 39642 37 94.6 0 ......A...................G.......... | ========== ====== ====== ====== ===================================== ===================================== ================== 34 37 98.7 36 ATGGCGGTCGTCTTCCGGGACGGCCGAGGATCGCAAC # Left flank : GCGGGGCCGAGGTGCGCAGGTCGGGGCTCGGGTTTCGTTGTTCGTCTTCCTGCCGAGTCGGCCGCGGTGTGGGCTTTTGCTGTCCCGGCTTCGCTTGAGCTCGAAGGACCCGTCCGTTGCGGCGACCATGACCAGCCCGTCCCAGAGCTGGCCGGCGGCGTCGCCGCGGGGGGCCTGCCGGAGCGCGGGGCCGGACGGGGCCGTTCCTGCGATATAGCCGCCCCCAGGACCGAGCACAATCTCTTCTTGAACGCCGCGGACCGGAAACGTACGCGCCACCAACGGCAACAGACCCGTACAAGCAGAAACGTGGCGAGACAGCCGACATCTGCGACTACGCTCCTGTGCGTTCGCCACGTCCGCGAGCATGCTTCGGAACCTCAAGTGCACACGCAACACGCGAACCGCACCGAAGCCGAACAACCTATTTGCCCTATTTTTCTTACCTCAACGGCTTTCCAAGAAGCATCAACTACAGTGACCTGGCTGGTCAGTCAGCA # Right flank : TCCGGCTCGAACCTGCCGAGCCACTCGAAGATGAGATGGCGGTCGTCTTCTGTTCGCCGTCATTAGCCCCGTCGGCCACTTGCATGGAAGCAGCCGACGGGGCCTCTCGCCGTCAGCTGGTGACCGGCTGCCCAGCGGCTGGCTGTGCGAGTCACGCCGCTTCCCGACACCGCTCCCACCACAGCCGGTCCAGCTCTCCACCTGGCGGCCTCCCCCGCCCGACCTGACTCGACCAGGACGGAGCCGAGGTCGAGCGGGCAGGCGCCGCGGCAGCCCGTCGGGTGCCGGCACAGCAGGCCCGGGTCGAGCCGGCGTGGTGACGTGGTCAGCGGTCATCGGGCGGCCCTCGGTTCTTCGTGCGCAAGACGACGAACGCGAAGTACGCGCCGGGAAAGCAGGCGAGCGACGAGGCGCCGAGCGCCGCGGGTCTCCCGCGCGCGAGGCGCGACCGCTCGCGCGTGCCGGGTGGTGTTGATCTCCCATCCCTCGATGGCGAGGCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGGCGGTCGTCTTCCGGGACGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGTCTTCAGGGACGACCGAGGATCGCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.50,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 44142-43593 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVG01000026.1 Streptomyces alanosinicus strain JCM 4714 sequence026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 44141 37 100.0 35 ..................................... CACCCGCGCCAGGTCCTCACCCGTGAGCAGATCCT 44069 37 100.0 36 ..................................... TTTCCCGCACCGCGCTGTTCGACCAGGCCGGTCGCC 43996 37 100.0 35 ..................................... TTCTCGACGAGCCCGGCGCCGACCAGCTCCTCGAG 43924 37 100.0 38 ..................................... GTTGTCAAGCTCGAGGACGAAGGCCACCACCTCGCCGA 43849 37 100.0 35 ..................................... GGCGCACCGAGGCCGGACTCGCGCAGCGTCCACTC 43777 37 94.6 36 ...............G...............T..... TGTCTGCCCGACCGGGTGACCGAGGCCGGCGCGATC 43704 37 97.3 38 ....T................................ GGCGAGAGCGCTGACGCCGACGTCCAGCTGCTGTCCGT 43629 37 97.3 0 ..........................G.......... | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 98.6 36 ATGGCGGTCGTCTTCCGGGACGGCCGAGGATCGCAAC # Left flank : GTTCCGAGTGTCGAGCACGGTTGCGATCCTCGGTCGCCCCGGGGGGCGACCGCCACGCCCGCACTCCCTGTCTCATGCGTCCCCGGAAGAGTGGTTGCGATCCTCGGTCGCCCCGGGGGGCGACCGCCACCCGACCCGGCTCGGGTCACTCCGGACACACACCCTCAGTTGCGATCCTCGGTCGCCCCGGGGGGGGCGACCGCCACCGTGCGACGGCTTGGCTTTGTCCTTGTACTCGTTGCAGTTGCGATCCTCGGTCGCCCCGGGGGGCGACCGCCACTTCGAGTTCGGCGGTCTTCACGCCCTGGATCTTCGCGTTGCGATCCTCGGTCGCCCCGGGGGGCGACCGCCACATCTCCTGGTGCGCGGCCGCGCGGGCGGCGGCCAAGTTGCGATCCTCGGTCGCCCCGGGGGGCGACCGCCACGTTGCCGAGGAAGATGTTCTCCGCGATGGAGAGGTGTTGCGATCCTCGGTCGCCCCGGGGGGCGACCGCCACCCT # Right flank : CGTCAGCACAACGGAGCGGTGGCCACCTTCATACAGATGGCAGTCGTCTTTCGGGACAGTGGTCGGCAGGCGGGGGCTCCGGGGCCTCTTCGTCCCTTGCGAGGGGCACAGCAGGTGCTCAGGGTTTCCAGGTCTGCAGGAAAGAAGCGATCCGGGCCGCGCTGCAGCGCGGATCGTTCAGCTCGTGGGCGAGCGCGGTGAGCTGCTCACGGGTGGGGCTGACCGGGATGTTGCTGGCCTCGAGATACATGACCGCGACGGCACAGGCGACGGTGAGGTTGGAGCGTTCCAGCCAGCGGCAGCGGCCCAGCGTGTGTACGAGAGCGGCGGCGCGGGCGTAGGCGCCGTCGTAGACGGGTGTGTCGAAGAGTTCGCCGCGGTGGCGGGCGACGGCGGCGATGGGCACGCCGTAATCGTCTGCGGCCGGGTCGCGGCGGCCGGCCCGTTCCGCCACTTCGAGGATCCAGGATTCGTCGACGTGAAGGATCACGCGGCGGCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGGCGGTCGTCTTCCGGGACGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGTCTTCAGGGACGACCGAGGATCGCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.50,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 44145-45216 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVG01000026.1 Streptomyces alanosinicus strain JCM 4714 sequence026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 44145 37 100.0 35 ..................................... ACCTCTCCATCGCGGAGAACATCTTCCTCGGCAAC 44217 37 100.0 35 ..................................... TTGGCCGCCGCCCGCGCGGCCGCGCACCAGGAGAT 44289 37 100.0 36 ..................................... GCGAAGATCCAGGGCGTGAAGACCGCCGAACTCGAA 44362 37 100.0 37 ..................................... TGCAACGAGTACAAGGACAAAGCCAAGCCGTCGCACG 44436 37 100.0 37 ..................................... TGAGGGTGTGTGTCCGGAGTGACCCGAGCCGGGTCGG CC [44451] 44512 37 100.0 37 ..................................... CACTCTTCCGGGGACGCATGAGACAGGGAGTGCGGGC 44586 37 100.0 34 ..................................... CGTGCTCGACACTCGGAACGGTACGCCGATCGGG 44657 37 100.0 35 ..................................... GCCGCCATGGTCGAGCACTGGACACCCCGGGACTG 44729 37 100.0 37 ..................................... AACCCGCGCTTGACCGGGTCGACGTCGACCACGACGG CC [44745] 44805 36 94.6 36 ........T.-.......................... CAGCAACAGGACGCCGAGGTTGGACATGGCGCTCGT 44877 37 97.3 37 ........T............................ TCCAGCTCCTTGTACGCCGCGCGAACGGTCTCGTGGT C [44887] 44952 37 97.3 36 ........T............................ GAGTTGGTGCAGCGGATCGACCGCGAGGCCGACCGC 45025 37 97.3 36 ........T............................ CCTCGTGTCAGCTGGCGGCGTTGCGGCGCAGCCAGC CCCCCC [45039] 45104 35 89.2 37 ........T--.....A.................... GTCGCAGATCATCGGCAGGTTGGCGAGGAGGATCCTG 45176 37 78.4 0 ........T....T....A...T...C.C.A...G.. | AG,T,T [45197,45206,45211] ========== ====== ====== ====== ===================================== ===================================== ================== 15 37 96.9 36 GTGGCGGTCGCCCCCCGGGGCGACCGAGGATCGCAAC # Left flank : ACGTCGGCGTCAGCGCTCTCGCCGTTGCGATCCTCGGCCGTCCCGGAAGACGACCACCATGATCGCGCCGGCCTCGGTCACCCGGTCGGGCAGACAGTTGCAATCCTCGGCCGTCCCCGAAGACGACCGCCATGAGTGGACGCTGCGCGAGTCCGGCCTCGGTGCGCCGTTGCGATCCTCGGCCGTCCCGGAAGACGACCGCCATTCGGCGAGGTGGTGGCCTTCGTCCTCGAGCTTGACAACGTTGCGATCCTCGGCCGTCCCGGAAGACGACCGCCATCTCGAGGAGCTGGTCGGCGCCGGGCTCGTCGAGAAGTTGCGATCCTCGGCCGTCCCGGAAGACGACCGCCATGGCGACCGGCCTGGTCGAACAGCGCGGTGCGGGAAAGTTGCGATCCTCGGCCGTCCCGGAAGACGACCGCCATAGGATCTGCTCACGGGTGAGGACCTGGCGCGGGTGGTTGCGATCCTCGGCCGTCCCGGAAGACGACCGCCATAGG # Right flank : CGCCCAGGGACGGCGCTACGCCCAGATGCAGCAGCGTCCCCGCCGCCTCCCCGGCCTCTCCGCCCTGATTCGCGGCGACGACCCGCCCCTCCTCGTGACGGGCGACCTGGCGATCACCATGGCCCCCGTCGCGTCCCGTCAACCGCGCCAGACCCCCGGCATCGTCACCAGCGACCAAAGAGGCGGCCGCTCATGACCTCACCGAAGCCGCCGTAACGGACCCGGACCACGGAAGCGGTCATCACGATCGTGCTGGCCGGACTCGTGGTCCTTGCCTCGGCGTCGCGCTGCGACCCGGAGCAAGTCCTCGTGGAAACGGGCCGCATCCGCCCCTACGCAGCACCACCGCCCCGCTCCGGCATCACCGCCCATTCCTTTGGTACAGGCTGGGATCATGAGCCGCTGCCCGTCGTCTGGTGGGGCAGTACGGCGCCGACGGGCCGGGATTTAGCCAGTGATGGCGCTTCCTGAATTCGGTTCAGGCAAGATTTTCGTGATGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCCCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : CCCCCCCGGGGCGACCGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCCCCGGGGCGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //