Array 1 14423-14873 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPEV01000033.1 Rhodobium orientis strain DSM 11290 NODE_33_length_60674_cov_52.0388, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 14423 37 100.0 32 ..................................... GTGAGTGCCGCCGCGAGGGAGGCGGTAGTGAT 14492 37 100.0 32 ..................................... GGAGGGCCGTGGTCAGCAGGCCGAGGTGGTGG 14561 37 100.0 34 ..................................... CAGCGGCCTGCCAGTTGCCGTACTTGAAGTACAC 14632 37 100.0 31 ..................................... GCGGAAAACTGGTTGTAGAGCTCCTCGACGA 14700 37 100.0 30 ..................................... AAACACGTGACACCGACGGTGGTGTTGTGC 14767 37 100.0 33 ..................................... TCCGCGCCGCAGCCGGGACGTCGGCTTTCGGCG 14837 37 78.4 0 ...G..C...T.........T.........A...GGG | ========== ====== ====== ====== ===================================== ================================== ================== 7 37 96.9 32 GTCAGCTGACCCCCCAGCCACCGGCTGGGATAGAAAC # Left flank : GCATAAGGACGGTGGCGACGGACGTCTGGATGATGCGGTCGACCACCGAGGGGATCGTCAGTCGCCGCACCCCGCCGGAGCGTTTTGGAATGTCGACCTGGCGCATCGCCCTTGGGTGATAAAGCCCCTCGCGCAGATCATTGGCGAGTGTGCCGATCCGCGCCTCCGCGCGAGCCGAAAAATCGTAGACGGTCATCCGGTCGCCGCCGGCGGCGCCGGCATTCTGCCACACCTTGGCCCAGGCCGCCCGCAACGCCGAACGTCGGCAGGCGGCATCGAACGCCTTTTTGTCATCGACGAGAACCCGCCGGGGCCCCTTGGTTCGCCTTGATTGAGCCATTTTGCTTTGGATATTATAAATTACATTGTAGAATAAGTAACATACAGGAAAGAGCTGCACAATTGTTTATGTTTTGTTCTATTTTTATTTCACTTGAATCCTCTTGCCTTGGAATTTGGCTTCGTTTCTTATTGTTCTGCAATGTGATATCGAGGGGTAA # Right flank : GAGAGACCGGTCGCGAAGCGAGCCGGCGAGCCGTTGGCAGACCTCAAGCGCCGGGGGCTGCTGAAGACAGTGCTCCGTGCTGAGGCGGGATTTCAGTGGGGGCGTTTGCGAGCGATAACGACGGGCGCATTACCCTGTCGTCCCTATTTCAGCTCGGCCGATTGCGGTTCGAACTCATTACGGCGTGTTCAAAAGCGATCGCGCGTTCGAAATCGACGATAATCGTCTTCTCAGCACGCGACACCGACACCCAGTTCGTTTCTTCCTCTTCCGCTGCATCGATGGTCGGAAGCACGATCCAATAGGCTCCGGACGACAACGATTTGACGAACTTCCACCGTTCGAAGGCGCTGTCGAGAAAGCGCTCGACTTCCTGCCAGAACATTTCTTGAGCATGTTCTTCGCCGCGATGGTCACGCATCAAGAGCTTCCAGCCCTCATACTGCGTTCGACGCCGCTTCTCCCGCGCAGTTTGCTGCAAGTTCATCACCGTTCCGACA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCTGACCCCCCAGCCACCGGCTGGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.60,-13.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 70-669 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPEV01000119.1 Rhodobium orientis strain DSM 11290 NODE_119_length_881_cov_16.8408, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 70 37 100.0 34 ..................................... ACGGCACCTTGAAGCCGAGCCCCGGTTCGACGAC 141 37 100.0 31 ..................................... TCCTGAGCCGTCTGTGAGAGAGTTCCCTGCA 209 37 100.0 31 ..................................... GCTTGACCTCGTCATCCTCGTCGCCGATGAC 277 37 100.0 32 ..................................... TGAAACGCCTTATCCGCATGCCCAGCGCAGTA 346 36 86.5 28 ....A.T.G.-...................C...... TCTAGCCAGCCCAGCCACAAGGCGATCA 410 37 78.4 33 .GA....AG..G...CC...C................ GTCGATAATTTCGACAGTGGTGCAGAAGTACAC 480 37 86.5 46 .G....T...C.........C...............A TCGCGCAGGGCAGCGCACTTGGTCAGAATAACCTGCGCGACCTGGA 563 37 94.6 33 ...G.............T................... TGAAACAGGTCGCCCATGGAGTTGACGAAGATG 633 37 83.8 0 ..T...T.......................A...GGG | ========== ====== ====== ====== ===================================== ============================================== ================== 9 37 92.2 34 GTCAGCCGACTCCCCAGCCATCGGCTGGGATAGAAAC # Left flank : CCGACTCCCCAGCCATCGGCTGGGATAGAAACCCCCCTGCCAAGAGGTCTCAATGAGGGTATCGGCGGCG # Right flank : AGAGACCGGTCGCGAAGCGAGCCGGCAAGCCGTTGGCAGATGTCAAACGCCCGGGAATACTGTTGAAGACAGCGCTCTTCGCTGAGGCGTATATTTCAGTGGGGGCGTTTGCGAGCGATAACGACGGGCGCATGGCCCTGTCGTCCCTATTTCAGCTCGGCCGATTGCGGTTCGAACTCATTACGGCGTGTTCAAAAGCGATCGCGCGTTCG # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCCGACTCCCCAGCCATCGGCTGGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.60,-13.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 260-13 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPEV01000178.1 Rhodobium orientis strain DSM 11290 NODE_182_length_267_cov_2.78947, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 259 37 100.0 36 ..................................... CAGGCACTTCCTCCTTGGGCGCATCCTCCTCGCCGA 186 37 100.0 32 ..................................... CTCTGCTTTTCCAGCCCTCGTCAGAAGGTGGC 117 37 100.0 31 ..................................... GCGCTCCTCGAACGCCGCTTTCGCCTTCCTC 49 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 100.0 33 GTCAGCCGACTCCCCAGCCATCGGCTGGGATAGAAAC # Left flank : CACGGAG # Right flank : CGAGAGATCGGAA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCCGACTCCCCAGCCATCGGCTGGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.60,-13.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [10.0-5.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //