Array 1 201465-204114 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKOA010000004.1 Klebsiella pneumoniae strain 2020EL-00054 NODE_4_length_384657_cov_38.321763, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 201465 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 201526 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 201587 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 201648 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 201710 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 201771 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 201832 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 201893 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 201954 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 202015 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 202076 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 202137 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 202198 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 202259 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 202320 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 202381 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 202442 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 202503 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 202564 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 202625 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 202686 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 202747 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 202808 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 202869 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 202930 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 202991 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 203052 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 203113 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 203174 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 203235 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 203296 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 203357 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 203418 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 203479 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 203540 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 203601 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 203662 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 203723 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 203784 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 203845 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 203906 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 203967 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 204028 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 204086 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6872-7814 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKOA010000028.1 Klebsiella pneumoniae strain 2020EL-00054 NODE_28_length_39781_cov_19.458794, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6872 29 93.1 32 ............TG............... CAACCTCAATTCCTAATGGCTGTCTAAGGAAA 6933 29 93.1 32 ............TG............... CAGGGTTTGCCCTTTTGCACCGCGCAGCGGTC 6994 29 93.1 32 ............AG............... AGCAACGTTTCCGGATTATATGGCTGGAACGT 7055 29 93.1 32 ............TG............... TGGTGTTGTCCACGGTCACCCGCTGGCTGGAA 7116 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 7177 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 7238 29 96.6 32 ............................C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 7299 29 93.1 32 ............TG............... TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 7360 29 100.0 32 ............................. CGAAAACGGCAACCTTCATAAAAACGTCTTTT C [7371] 7422 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 7483 29 100.0 32 ............................. CAGCGTCTGAACGGACGAAACATCCCTGTTGA 7544 28 89.7 32 ..........-.TC............... CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 7604 29 100.0 32 ............................. GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 7665 29 89.7 32 ............TGA.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 7726 29 100.0 32 ............................. CACTACCAGATCCGAATGGACACCCGTAATGA 7787 28 89.7 0 T.....................-.....A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 95.3 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTGGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGCTATATATACAGTGTTTTTAAGTGATCGGAGGTTGTGCCTATGTTCTTAATTCCAATGGAAAATCCTGAGAAAATCGCCATCCCTTTATTTCTCGAGCGGTGTGCAGCTGGCTTCCCCAGCCCTGCCCAGGATTATACTTCCAGTGAGCTAGACCTGAACGATTATTGCATCAGGCATC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //