Array 1 3504-1744 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFJI01000077.1 [Clostridium] spiroforme strain An26 An26_contig_77, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 3503 33 100.0 36 ................................. TACAACCTTATATTACTTGCTACATGTGGAAAAGGA 3434 33 100.0 36 ................................. TGTAAAAAAACTTTTATATTCTTCACGTTTCATTTT 3365 33 100.0 35 ................................. ATCACAAATCCATGTTCGGTAAAACTCTTAACAAA 3297 33 100.0 36 ................................. ACAGCTAAGATAGGATTAAGACCTGCTTGTTGTAAA 3228 33 100.0 36 ................................. CGGAAAGTAAATAAGAAAAAAGCAAAAGAAAAATTC 3159 33 100.0 36 ................................. GTTGTAAGAGATTTAAAAAGAGTATGGTTTACGCCA 3090 33 100.0 36 ................................. CAATTGTTAGTTAGTTTAGGTATTTCAGTATTAATT 3021 33 100.0 36 ................................. ATGAAAACAATAAACTAGAATTTGACTTAGTTGTAG 2952 33 100.0 36 ................................. AAACAAAGTGAGGCAATTTTAACTTTAGTTCAAGAA 2883 33 100.0 36 ................................. GGCATACGGCTCATGCGAACAAATTCAGGTTCAATA 2814 33 100.0 38 ................................. GAACTTTTAGGATATAATCACACTCCAATTTCGGTAAA 2743 33 100.0 36 ................................. ATGCCTATGTATAGCGTTCCTGGTTTAACTCGAATG 2674 33 100.0 35 ................................. TTATTAAATTTAAAAACAGCACCATTATTTTTTAA 2606 33 100.0 35 ................................. AAAGGCTTAAAGATGATTAAAAACAAGGGTCTTGA 2538 33 100.0 37 ................................. TTACTCATCACCACAAATATCTAAAGAGACGACTAAA 2468 33 100.0 36 ................................. ATTCTAACCGCTATGAGGGGGTATAATATGGAACTG 2399 33 100.0 37 ................................. TTACATCAAAAGGAACAAGCTCACCAACATTAAATGT 2329 33 100.0 36 ................................. ATTTTAGCTACAGGATCTATTAGCAGTGGTAATTCT 2260 33 100.0 36 ................................. GACATTAAAAGAAAAATTAGCAACTTCTACATTACT 2191 33 100.0 35 ................................. ATTCTAGCTACAGGATCTATTAGCTCTGGTAATTC 2123 33 100.0 36 ................................. GAGTAATCAGACTGCCGGCCAATGCAAAACAGTCAA 2054 33 100.0 38 ................................. GCATGATACAAACTATAATCTTCTAATCGACCTAATTC 1983 33 100.0 36 ................................. TTTCCTGTAACATTAGTTTTATTAACTTCTACAATC 1914 33 100.0 37 ................................. TGGGATACAGTAGTATGCTTTACATTCCGTGTAAATG 1844 33 100.0 35 ................................. TTAGGATCAGTTATAACTATCGAACCTGTAGCAGA 1776 33 87.9 0 .............................GTTA | ========== ====== ====== ====== ================================= ====================================== ================== 26 33 99.5 36 GTTTATAATCTGATCATTATATGAAATGTAAAT # Left flank : TCCCCATGAGATATTGCATGCTATTTGTTTTAAAGAGGATGTATATTTATATACAAATTTAGCACAAGGAATGTTATTTGTAACCGGAGTTGAGTCGATGAGTAAATCAAGGTATGTTTTTATGTCGTTATTACCAAATATTGTTTTTGGTTTGGTTCCTTATATTATTGGATTAATATTTCCAAATTTGATTTTCTTTGTTGTGTTTGGAATCATTTCAATTAGTATGGGAACAGGAGATTATTATAATACATATAATGCTATAACCCAGATGCCAAAAGGAGCAAAAACATATTTGTATCAATTTAATTCTTATTGGTACATGCCATAATTTAAATAAACCTTCAGTCGATCTTAATTGTGTAAAAACATAGGGAGTACGACAGAATAAATTTAGCAAATAAACAAAATACACATTGTATTTATACAATTAATATGATAATTTAAAGATATAGAGATAATTTAAGATAATTATTTATTTAATTAATACCTGTTAACGG # Right flank : GACTAAATTGGATATTATAGGAGAATTATTATAATTTAGTAAAAGTGGGATAATCTAAAATAGTAAGAAATAGAAGAATTTATAGTACTAAATTAAAAACTTGTAGAGTTGTAGTAAACCTAGAGCTGAGTTAGTTTGTGAATATGAATTAATTCTTTTTACTTTATTTTCATAGATTAATAAATATGATCTTAACTAATTCATTAAATATTGAAAAAAATTATAGTAATGCTCAAAAAGAACTTAATATTATTTAAAAATAAAGGGCGCTATAAAATTTCATGGGGATTTGAAACAAAAAATTTCAATTTCTCCCTTTAAAATATTATGGGGAGAATGTAGTATCTGGCTGCATTCTCCTCCTTTATTTTTTCTTAATCAAATTAATCTGTTTCTTCATCAAATGATGTTTCTAGATCATCTGATTTTATCTTTATTGAATCATTGTATTCTATATTCAAATCATATTTTTTATATTTGTTTTGAGAGTACAGTATTCT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAATCTGATCATTATATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:81.82%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 23783-20220 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFJI01000009.1 [Clostridium] spiroforme strain An26 An26_contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 23782 30 100.0 36 .............................. ATTGTTGAACTAGTATCAAGGCTCATCTTTTGTACT 23716 30 100.0 36 .............................. GTGATACTGGAATCGAATTAGGAGCAACAAAAGATT 23650 30 100.0 35 .............................. GATCGAGGGGTTATTAAAGAAAATGCAGATGAAAG 23585 30 100.0 35 .............................. AAATATGTATCAATCTGATTAGTAAATACATTTAA 23520 30 100.0 35 .............................. TAATAACACATTTTTAGGCTTATTTAGTCCCAGAT 23455 30 100.0 35 .............................. TGTGCTTCATTAAATTTTTGAGGATACATAATTTT 23390 30 100.0 36 .............................. TATTTTTATCAATATCATTAATGCTAGGTGTTTCTT 23324 30 100.0 34 .............................. GTCTTATCCGGATAATTTATTTGTTAATTTACAA 23260 30 100.0 35 .............................. GTCTTTTTCTATTAATACTTCCGCATAAGTCTTTG 23195 30 100.0 36 .............................. AATGGAATGTCAAAAACGTTTAATCCAAATTTATCT 23129 30 100.0 34 .............................. GCAGTAACACTAAGACCAGCGACAGAGCCAAGCG 23065 30 100.0 34 .............................. ACAGATTTTTGCTGAAACTGTGAATTAATATATC 23001 30 100.0 34 .............................. CCATAAGTATGAGGCATAGTAGCAATATCAACTA 22937 30 100.0 37 .............................. TCTTTAACCTGAACACAAACTTTAAAATTTGATAATC 22870 30 100.0 34 .............................. GTAGAAGAACTTAAAAATAATGAAAGCGAAGCTA 22806 30 100.0 36 .............................. AGGTATGTAAAAAAGATCCACTAAATTATCTTGTTA 22740 30 100.0 37 .............................. TTTGATAATTGATTTGATTTTCTTATTTCTGGTAATA 22673 30 100.0 36 .............................. AACTGATGTCGTAAAGCCATTGCAACAATCAACACG 22607 30 100.0 37 .............................. TAATATACCTCTCTAATGTATTGTAAATGGTGTGTTC 22540 30 100.0 37 .............................. ATGATGGTTGATGGCAGAATACCAAATGAGTTATTAG 22473 30 100.0 36 .............................. GCTTCTGGCCATGTCATATTAGCTAAGTTAATACAT 22407 30 100.0 35 .............................. GGTATTAAAGCATCACAAGCAGGTACTTCATTAAG 22342 30 100.0 36 .............................. AATAAATTAGATATAGCTGATGTTTATTTTCAAATT 22276 30 100.0 35 .............................. ATTCTTACGGCTGCATATCCGCCCAATAATTTATT 22211 30 100.0 35 .............................. TTATTTAATTGTTCTAATGCATCTTTAATTTTTGC 22146 30 100.0 35 .............................. GGGGGAAAGTACATTTTACGCCCCACTGCTTTTAG 22081 30 100.0 36 .............................. TTGTTCAACCATTATCAATGCAATCTGTTTGATTTG 22015 30 100.0 35 .............................. ATTGTTATGCCACCAACTATGTTGTTAACTTGGTA 21950 30 100.0 34 .............................. AAGCAAGTATGAGAGAACCACTTATAATGACTGT 21886 30 100.0 35 .............................. TTTTCTACAATTCCAAAGTGTAGCGGTTTTAGGTT 21821 30 100.0 36 .............................. AAAGAAAAGAAAGCATGGCAATTTAGGGATAGCGTT 21755 30 100.0 34 .............................. TTATTATTAATGAACAATAAAATGCTTTCTAAGG 21691 30 100.0 37 .............................. TTTTAATTTATCAACTAATTTATCAATTTTAGTTTCT 21624 30 100.0 37 .............................. TTTTTAAGTGTAATTTGTTGTTTATATTCTAAAACAC 21557 30 100.0 36 .............................. AATGTCGAAATATTTTACAACAGGAGTATTTCCCGA 21491 30 100.0 35 .............................. AATGGAGTTTTTGCTCCTAAATCTACTAATGTTTG 21426 30 100.0 35 .............................. TTTAAAGTAACCTTAAATTCATCACCCGTCAAGTC 21361 30 100.0 36 .............................. TTAGAAATATAGTCTTTTTCCTCATCTGTTAATATA 21295 30 100.0 37 .............................. CTGAAACCCTTATTTTGGATACAGATATAGTTAACAT 21228 30 100.0 35 .............................. AACTTAAAATTAAGACCAGTTAAAGTTAACGGAGG 21163 30 100.0 35 .............................. AAAAAAGCTATTAGAATCAAAATTATAGCGTATTT 21098 30 100.0 36 .............................. AATGAATTTGAAATGACTGTAGAAGATAACTTTTTA 21032 30 100.0 35 .............................. TCATATGTAATCGTTAGAAACATTGTTCTAGAATG 20967 30 100.0 35 .............................. TCAACAACAATTGTTAAAGATAAAAACGGCAAAAA 20902 30 100.0 35 .............................. CTCGAAAAATTATAATCTGCATCAATAGTCACTGT 20837 30 100.0 35 .............................. TTCATTAAAGGATTGTCTTTATCTACACATACTGT 20772 30 100.0 36 .............................. AAAGTGCCATCATTGGATATCGTATACGTTGTTAAC 20706 30 100.0 36 .............................. TTCCCTCCATATGGTTGTGGTAGTGGCATCCATGCT 20640 30 100.0 36 .............................. TTGATTGGATACGGTTAATATTCTCCTGCGTAGCTA 20574 30 100.0 36 .............................. ACTACTTCTTTTGTTTGTTGAGTGTAGGTGTCGTTT 20508 30 100.0 35 .............................. TCGATTTTTCAAATCACATAATCTTATAATTTGTT 20443 30 100.0 35 .............................. AATTCTGCAATACAAGCAAAACAAGATGCTGAGCA 20378 30 100.0 34 .............................. TAATATCTACTCATTTATACCACGTCCGTATATT 20314 30 100.0 35 .............................. GAAAACAACTGAGAAACTTTCAGAAATGTTAAAAG 20249 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 55 30 100.0 35 GTTTAATATCAACATAAGATGTATTTAAAT # Left flank : AGTTTAAACCATTTTCAGTAAAAGAGAAGCAATAATGAAAAAGAATATTAATTATAATTATGTTATAGTTTGTTATGATGTTGGAGAAAAAAGAGTCAATAAAGTTTTTAAAATATGTAAAAAATATTTGTCGCATTATCAACTTTCAATATTTAGAGGGCCAATTACACCTTCAAAGCTAATATTATTAAAAAAAGAATTAAAAAAAGTGATTGATTTAGAAGAGGATTTTATTAGTATTATTAAATTGCAAAGCGAAAATGTTTTTGAAGAAGAATTATTGGGAATGGTTAAGGAAGAAAATGCAGATAATTTAATAGTATAATTTTACCAGCTGAATCAATGCTTAGTCTCTTTAAATCTCTTATGTTTCTAAGAAAATAAGAGAGTATTGAATGAAAAATAACGAAATAAATATTTGCTGGTAAAATTTATGAAAATTGTTGATTTATCTATTGTTTAGTCTATAATATTTAAGTGAAAGTGGCTTATTTACTATG # Right flank : TTCATTGAATGCTAATACACCATATTTGGTTACAGTTTAATATCAGTAAAAAGTATAAAAAATATATTTAAATATCGAAAATACAAAAAATTCTAATTAGAGTAGGCAGGTGATAAATATTTTGATATAGTAAGTATGCTATGTTTAAAAGGAGTTAATTATGGATAAATTATCATTTAAAAATACTTTGATTATTGGAATAACTTTATTTTCAATGTTTTTTGGTGCAGGAAATTTAATTTTCCCACCGTTAATAGGTGCTAAAAGTGGTGAACAGTTTGTACTAGCAATACTAGGTTTTATTTTAACTGCAGTTGTTATACCAACTGTTGCAGTTATTGTTGTATCAAAACATCGTGGTTTAAAAAATATAACCGATCGTTTTCATCCAAAGTTTACACTAATTTTTATCACATTAGTCTATTTACTAATTGGACCATGTGTTGCTATTCCTAGAACTGCGTCTACTTCATTTGAAATGACACTTGCTCCATTTATTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATATCAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 7601-6276 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFJI01000072.1 [Clostridium] spiroforme strain An26 An26_contig_72, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================== ================== 7600 31 100.0 35 ............................... TTATTTTGGTTTTTTTGTTTTTATTATGTTATTTA 7534 31 100.0 37 ............................... TCATTATTTCTAAGTTCTTCAACTGATGTCGCATTTT 7466 31 100.0 38 ............................... TTTTTCTTTTCTTCTCTCAAAGTTTTGGCGTATTTTCT 7397 31 100.0 39 ............................... TCGCTTCCATTCCTTCATTGGCTGCTATACGGGTAATTT 7327 31 100.0 36 ............................... CTAAAGTTACCATTAAATACGGCTTTTGGTGTATCA 7260 31 100.0 38 ............................... GGAATACGGTGTGCTGTTATTACTAATCTATGGGTATT 7191 31 100.0 37 ............................... TAGAAACTGTATCAACATTGTATAAAAATCAAACATC 7123 31 100.0 34 ............................... TGGAACAGCACAAGTTACTCTTCTAATATTATAG 7058 31 100.0 41 ............................... TATTTTCATACTCTTGCGGAAAGTCCACTAATGCACTGAAA 6986 31 100.0 34 ............................... CTACCATAGCACCTACGACTAATACCTTTCCTAA 6921 31 100.0 35 ............................... CGAACGAAACACTCATAACTTTATTAGAAGTTATT 6855 31 100.0 36 ............................... AATTACTTCTCCAAGCACTTCAAATCGCATAGTTTT 6788 31 100.0 36 ............................... CATTTGGCAAAACGTCAATTTGTCCTTTTGCTTTTA 6721 31 100.0 38 ............................... TCTGTAATTCCTAAACGGTCATTACTGAATTTTAGATG 6652 31 100.0 42 ............................... TAATAGTGTGTGACCAAAAAGATTTCCATCTGTGGTATATTC 6579 31 100.0 37 ............................... GAACCACCGCTTGATCCTGAACCTCCTGAGCTCCCAC 6511 31 100.0 37 ............................... TCAACTTAGCGCCACTCCCTTTCTTAGGTGGTTCATG 6443 31 100.0 37 ............................... TACTTCATTAGCGTACTTCTTTTTAGCTTCACTATTA 6375 31 100.0 37 ............................... GCTTCTCAATTCATCACTTCCTTAATAAAATATTACA 6307 31 87.1 0 ......................A.....TAT | G [6279] ========== ====== ====== ====== =============================== ========================================== ================== 20 31 99.4 37 ATTAGTTATTGTTCTTATAAAGGATTAACGC # Left flank : TACACTTTTTTAGCTACGGTTATTCACAATTTTACGGTGGATAACATTTTTTAAGCTAGAAAATAGACATGATTTATAAGTTTTTCATCACAAATTTGCTTTCATGAATAATTTGGGTATTATTAATTTTTGTTTGATAGTCGATAAAATGATAAGTTTTAATACTTGAATTTATTATAAATACAAAGTATTATTAGAATGAATTTAGTATAATTCTAAATTCATTC # Right flank : TAATTGTTATAAATTTCTAAGTTACTAAATTTAAGAAAATACGTTAAATAAAAACAAGTCGTATTTAAATTTATGACTTGTTTAATGTGTCTTATTGTATTTTTTAATGTATAATGTAGCTAAATTATTTTGGAGGTAGATTATGAATGATGTAATTAAAGAGTTATTTGAACGTAAGTCAGTAAGAGTTTATAGTGATAAGATGATTGAAGAAGATAAAAAGCAATTAATTATCGATGCTGCGATTCAAGCACCAACAGCGGGGAATATGACTTTGTATTCAATTATTGATGTTGAAGACCAAGAAATAAAAGAAAAACTAGCAAAATCTTGTGATAATCAACCATTTATTGCTAAAGCACCATTGGTATTAATTTTTGTTGCCGATTATCAAAAATGGTATGATGCTTTTAAATACTATCATGGTAATGAAGAAGTAAGAAGTCCTTCTTATGGTGATTTTTTACTAGCGTATAGTGATGCATTGATTGCTGCTCAAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGTTATTGTTCTTATAAAGGATTAACGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-86.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 55907-56311 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFJI01000007.1 [Clostridium] spiroforme strain An26 An26_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================== ================== 55907 30 96.7 37 A............................. CAAATTATTTTTTCATCAATAATACTACTATACTGTA 55974 30 100.0 45 .............................. TTTAACCATTCAATCATCTCATCTGCTTTTGCGTGAGCGGAAAAT 56049 30 100.0 44 .............................. TCTTTACTGCTGTTTTTTCCATATTTTATGCCTCCCTTACCTAG 56123 30 100.0 50 .............................. TTTATCTTTACACATCATCAATGGAAGTAATTGATTCATATTAGAATCTT 56203 30 96.7 46 .....................G........ GAATTAAACATAGTATCAACTGTATTTTGTGGATAACTTTCCAATG 56279 30 86.7 0 .....................G.A.A...T | A,GA [56299,56302] ========== ====== ====== ====== ============================== ================================================== ================== 6 30 96.7 45 TGTTGTACCTTAACTTAGAGTAATTGTTAC # Left flank : AATTCAAAAGCTTATACGATGTAACTAATGCAAATCAAAATAGTACATTTAGTAAATATGCAGCAATTATGGCAAGCATAGCTTTAGTTTTTACGTCTATAACATTTATATATGATATGTTTGAAATACCAAAAGATATGTGCATTAGAGTGGGAACAGTGGTAATAGCTATTATTATAATTTTTGGAATTATATGTTATGTTAGAAATAAATACAGACGAAATAAATAGTTATATGCGGTCAATCTAAACCTAAGATATATCAAGGGTTTTAAAGGAAAATGAACAATAAAATGGAGTAAAAATCAACAAAAAATAGTTAATTTTGCGGTTAATCTTTTTTACAAAAAAGAACAAATCTTTAAAATTGCTCAAACCCGTTGATATATCTACTGTTTAGACGATTTAACATAAAAGAGACTGACCGCAAAAAGATGATGAGTATTAGTTTTTAAGTCATAGAAAACATTATTTACTAATAAAAAATGGCTTAAATACAGT # Right flank : TGTTAATTTATCTTTTATAATTTATTTGTGTTTCAATATAGAAAATTTATATAAGTGGGTGATTGGATGTTGGAGGAAATATTTTCTAATAAGGAATTATTAGATGAGGCGTATAAAGTTATTCAAAGTAGAAAGTTATCAGCTGGTGTTGATGGAATAGCTAGTGATGAATTATTTTATTATTTGAAATTAAATTGGGAAAGTGTTTATAAAACAATAGTTTCAGGCAATTATTATCCAAAGTTAGTTATTGAAAATGAGATTGTTTCTAAAAAGGGAAAGAAAAGAAAGATATATAAGTATTGTGTTATTGATGTTTATATTCAAAAGGTTATTTCTTTGTTTTTGCATGAGTATTTTAGTGATAAGTTTATTGGTAATTTGTATAGTTTTAAGAAGAATGTTGGAATTTTGGATTTATTAAAGGAAGCGGTGAGATGTATAAGAGATGGATATGAATATGTTGTTGAGGTTGATATTAGGAGTTATTTTGAAAATAT # Questionable array : NO Score: 2.93 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.06, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTGTACCTTAACTTAGAGTAATTGTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 58800-59107 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFJI01000007.1 [Clostridium] spiroforme strain An26 An26_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 58800 29 100.0 42 ............................. TAAATCGTGAATTGAGCCATCTTGGCCAACAGCAAATCCAGG 58871 29 100.0 43 ............................. TATCCGATTTTCAAATCTATCGTCGCAATAATTTCGTATCCTC 58943 29 100.0 35 ............................. GAAATAATCGAGGATCAATTTCCCCGATTATTTTA 59007 29 100.0 42 ............................. GAAACAGCATTTCTGTTATCTGCTACATGTCCTGGATTAACC 59078 29 72.4 0 ....A..C......CG....A..A...TT | G [59101] ========== ====== ====== ====== ============================= =========================================== ================== 5 29 94.5 41 GTTGTACTTTAACTTAGAGTGATTGTTAC # Left flank : ATAAGCGTGTTACTAAAGTACGAAAAGTATTTAAAAAGTATTTGTTTTCAGTTCAAAATTCAGTATTTGAAGGAAATATAACTGATGGTAAATTAAAACGTTTGAAAAATGAACTTAGTAAAATAGTGGATGTAAACTATGATTCAATCTGTTTATATAAATTACAATCAACTAAATATACTTCAAAAGAAGAAATAGGTGTAGTTAAGCATTTTATTAATATTATTTAGTTATTGCGGTTAATCTAAACCCAAGGTATATCAAGGACTTTAAAGGAAAATAAGATATAAAATTGGATGAAAATCAATAAAAAATAGTTAATTTTGCGGTTAATCTTTTTTACAAAAAAGAATAAATCTTTAAAATTACTCAAACCCGTTGATATATCTACTGTTTAGACGATTTAACATAAAAGAGACTGACCGCAAAAAGATGATGAATATTAGTTTTTAAGTCATAAAAGACATTACTTACTAATAAAAAATGGCTTAAATACAGTT # Right flank : TGATAAATAAAATATTTGAATTATATAAAAATAATGAATAGGAGTATATTATGAGATATAAATTATTTTTTAAAATTAATAAACCGATGGTTTTGAATTTGAATTATCATTTAGAATTACAAAGATTTATTTATTTAATGATTTCAAAAGAAGATAAAAGTTATGCTGATTGGTTACATGATCAGGGATTTGGAGATACAAAGAAATTTAAGTTATTTACTTTTAGCAAGATATATTGTCCTCAAAGACAAATAAAGGATAATAAGTTTGTTATGAAAAATTGTTTTAGTTTTCAATTTTCTTGTATTGATAAGAGATTAGATGAAATAGTTTTGAAGTGTTTGAATAAAGAAAAGAACTACATGTTTAACAATCAAAAAATTATATTAGATCGATATGAGGTGCATTTATATAAAGGTAGTGATGATATTAAAATAAAAATGATATCACCAATTGTTGTTAAAGATACATATATTGAAAATGATAGAAAAAAAACATAT # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTACTTTAACTTAGAGTGATTGTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-86.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 60265-60642 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFJI01000007.1 [Clostridium] spiroforme strain An26 An26_contig_7, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 60265 29 100.0 42 ............................. TATTCAAATTTATGAGGAACAGTTTGCATATGAACATCCTTT 60336 29 100.0 40 ............................. AAATTCTAGCTGTAGATTTTCAGCTTCATTTGGATCCCAA 60405 29 100.0 40 ............................. GGAAAGGAAACTTAAATAATGTATGTCTATGTGTACTTAT 60474 29 100.0 38 ............................. TTTTGAGTCCAGATAGTGATCTTAGGATCTATCTTTAT 60541 29 100.0 44 ............................. TTTAATATCTCAAATGTTTTTTTACTATTAATTCTAGTAGTTAA 60614 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================ ================== 6 29 100.0 41 GTTGTACCTTAACTTAGAGTAATTGTTAC # Left flank : TTATATTACAGGATGGCAAGGGATATATGAATTAAGTGGTAAAAGGGAATATTTAGAATTTTTATATTATGTTGGAATTGGAGAACGAAATTCTCAAGGGTTTGGTATGTTTGAAATTATTGAATAGTTTGAAGTTTATAATGATAAAAAGTGAAGAATTATTTGTTGTAATAGTAGATTAAAGTATTTAAATATTATAGAATAAATTTAGAAACTTAATTATTTATCAAAATTTGCGGTCAATCTAAACCTAAGGTATATCAAGGACTTTAAAGGAAAATGAGCTATAAAATCAAATAAAAATCAATGAAATATAGTCAATTTTGCGGTTAATCTTTTTTACAAAAAAGAATAAATCTTTAAAATTGCTCAAACCCGTTGATATATCTACTGTTTAGACGATTTAACATAAAAGAGACTGACCGCAAAAAGATGATAAATATCAATATTTTAGACATAAAAAACACGATTTACTAATAAAAAAAGGCTAAAATACAGTA # Right flank : CAAAAATACATGTTTTCTTGTTTCATATAAAAGTCAAGATAATTTGACCAATTTGTTGCAATTAAGTGTTCTCAGTTTTTTTAGGATTTAATTTATCTTTGATTCGATAAGATGGACCTGTGATATTAAATAAATATGAATAATGAAGAATCCTGTCTAATATGGCTTTAGTTATCATTTCATCATTTCCTAATATCTGTGGCCATTTATCAAATGAAATATTGCTTGTAAAAATAGTAGATCGTTTAGTATATCTTAAATCAATCAATTGAAAAAATAATTTAGCTTCCAGTGGTGTTATTTCATTAAATCCAACTTCATCAATGACTAGCAGCTTATACTTATAAAAGAGTCTTAGTTTTCTTTCTAATGTCCCCTCATTATATGCCTGTCTTAGTATATTGATTAATTTATTAAATTTAATAAAATATACACTATTTCTTCTTATAGCTACTGTATATGCAATTGCTATTGCCAAATGTGTTTTTCCAGTACCAGGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTACCTTAACTTAGAGTAATTGTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //