Array 1 252431-241667 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDIG01000002.1 Bifidobacterium longum strain DS7_3 DS7_3_2_length_585361_cov_98.260122, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 252430 33 100.0 33 ................................. TCGGCCTCCGATTGGGACAGGCGCCACTGCTCG 252364 33 97.0 33 ................................G AGTTCGTCGCCGCCGTTCTTGGGCGAGCGGATA 252298 33 97.0 33 ................................C GTGACGGTGATGATGTCCTGCAGTCCGATACGG 252232 33 97.0 34 ................................T GCCTGTCCGGCTGGCCGTCATATCGCGCGATGGC 252165 33 97.0 33 ................................G TGGCTCCGACCGGAGTGGCCTGGACCCCGCCGG 252099 33 100.0 32 ................................. TCGGCTTCAACGCCGCCGCCAATGCGGCGAAC 252034 33 97.0 32 ................................C TTATTCGTAGGTTGGGATTCCGATGGCGGTCG 251969 33 97.0 33 ................................T GACTGGTGTTGTCCTGCCTCCACACCACGTCTA 251903 33 97.0 36 ................................G TAATCTATGGTGATCCAGGAACTGGTAAATCGACGA 251834 33 97.0 33 ................................C CGTATAAGCCGTATGAAGTGCCGTCGCCATCTT 251768 33 97.0 33 ................................T TCGACACCTTGCCGATGTAGGTCGCGGCCGCAT 251702 33 97.0 33 ................................C TTTCAATGTGATTGGTGATGTTGGTGCCGGCGT 251636 33 100.0 34 ................................. CCCAGTCATCTATCATGAGTTTTTTGCCGCCGTA 251569 33 100.0 32 ................................. ACGCAAGCTCACGTAGCAGATGATAGTACATG 251504 33 97.0 34 ................................T GCGTCGGAGCGGTGGAACACGGTAGCGAGACCCT 251437 33 100.0 32 ................................. CGTCACCGCCAAGGGTAAGCGCCGAAGCCAAC 251372 33 97.0 34 ................................C AGCACGACGTCACATTCGGTAGCTGCTATGTGAC 251305 33 100.0 33 ................................. TGCCGCCCAGTATGCGAGAGCGGCGCGCCACGG 251239 33 100.0 33 ................................. AGCGCCGTGACCTCTCCTCCGAGATAGCGCATG 251173 33 100.0 33 ................................. CTACCGGTGTCCAGCCCCTCGGGCAGTGCGAGA 251107 33 97.0 34 ................................C GTCTCGCTTTCCTGACGGCGCGACAGGAGGGCGC 251040 33 97.0 34 ................................C ATGCGCCCAGCTTACTTTGGCTAGCCTCGATGCC 250973 33 100.0 34 ................................. TTACTGCCGACCAGCGTACCAAGCTCACCGTAGA 250906 33 97.0 33 ................................C ACGGGGCGCATACCCGATATCAACGACAGGAAT 250840 33 100.0 34 ................................. AGGCGGTTGGAAGTTCCGCAAAAGCCAAGGGAAT 250773 33 100.0 35 ................................. ATCTCTCGCAGTTCGGGGATAATGATAAGCCCTCA 250705 33 97.0 37 ................................T CCCTCGTGCTGCAACCTGACGTGAACAGATCGCGCCG 250635 33 97.0 32 ................................T AGCATGTCGTCAAAAGTCCATTGATAGCCGTT 250570 33 97.0 34 ................................T TCCGTGATCCGTTCAGGTTGGTTCCGGTCACCGA 250503 33 97.0 34 ................................C CCAACCACCCGCACGGGTGGTTTTTTATGCCCGA 250436 33 97.0 33 ................................G GCTGCGATGTGTCTGGCCTTGCATTTGCGGCGG 250370 33 100.0 33 ................................. ACGAGACCGGCGGAGACCCCGCACAGGCCATCG 250304 33 97.0 33 ................................C GCTTCCGGGAAGGTCCGCGTCTGGGCCGAACCG 250238 33 97.0 32 ................................C CCTCCCCCGCCGAGATGACGCGGTGGCGTGAG 250173 33 97.0 33 ................................T CCTGTGGAGTCGTATCCGCAGTGTCCTGTTGAA 250107 33 97.0 33 ................................T CGGCATCCCGGCGTCAATCATGCTTGCCGCAGT 250041 33 97.0 34 ................................G TGTGTGTTCGACGGCGTGGACACGGCCAAGCTCT 249974 33 100.0 35 ................................. TCTTGGCGGCGTTGATGGCGTCAAGGTCTTTGAAT 249906 33 97.0 33 ................................T CGTTGGCCTGCGCCACCTCGTCGGAGATGAGCC 249840 33 97.0 34 ................................T CGTATCATCATACGCGCGTGGCTTATGCCACGCT 249773 33 97.0 33 ................................G ACCTTGAACTGGTGTCGGAAAAAGACCGTGGGT 249707 33 100.0 33 ................................. ATCCGTCCATTGTCGCGTCGATTGCCGTCAACG 249641 33 97.0 32 ................................G CTGAGGATTACGAGAGCTACCCACAGACGTAT 249576 33 100.0 32 ................................. GACCGTGGAAGCCGCATGGGGCACCAAGCCGA 249511 33 100.0 33 ................................. TATGTTGTGGTGTTAAAAATGGTGTTTGTTCAT 249445 33 97.0 33 ................................G GGATGAGGGTGATGGTTGCATCGGTGATTCCTC 249379 33 100.0 34 ................................. TTGTTGCGCTCAATTGAGCGCACGTCAAGCGGGC 249312 33 100.0 35 ................................. CTCAGGTCAGCAACACATCCGTCAACGAGACAATC 249244 33 100.0 34 ................................. CCAGGGAGCCAGAAGACAAAGCTGATCGCCGTCA 249177 33 97.0 33 ................................C AGTAACGACTGTCGTGAGTTCCGGGTGGCGCGC 249111 33 100.0 34 ................................. CGCAGATGACCATGCAGCCGCACACCGACATGCT 249044 33 100.0 34 ................................. CCACGGCGTGGAACGCCTACCCAAGCCACACCGG 248977 33 97.0 34 ................................G TTGACATAATAATTATAGCTCAATTAAGTAAGTT 248910 33 97.0 32 ................................T CCACGCACCTCGCCGAAGCCGGAGCCCCGGAA 248845 33 97.0 32 ................................C CAGATGCTTTGGGCCTCCTTGAGAGACGCGAT 248780 33 97.0 32 ................................C GTCCGCCAAGCCGACGGGGAACCAGAAGCTGG 248715 33 97.0 35 ................................C GCGTCGAGGAGGTGAACCGTTTTGACCAGCGCAAC 248647 33 97.0 34 ................................C AACCGGCAGTAGGCTGTTGCCGCATCGTGGTATA 248580 33 100.0 33 ................................. CGCCGGACACGAGGCAGTTGTTGTTGACCTGTC 248514 33 97.0 34 ................................C TCCACCCAACACACGTCCACGCCCTCGATACTCT 248447 33 97.0 33 ................................T CGCGTGAGCTGCGCGAAGAAGACCGGCTTATGA 248381 33 100.0 32 ................................. CGTGAAACAGACCGCGACGGGGGAGCGCAAAC 248316 33 100.0 34 ................................. TCCAACAGAAAACGCAGGTGACTAATGAGGTGTT 248249 33 100.0 34 ................................. CGTTTTGGCAGATGCAGGAAGCGTATGTGAGGGG 248182 33 97.0 34 ................................T TATACCTGATTGCTGTAGTAAGCCGCCAAGAATC 248115 33 100.0 33 ................................. GCCCGTTCGGCGCGAGGTCGGGGCATGTGGTGT 248049 33 100.0 33 ................................. TGGCGGAGTGCGAACGGTTGAGCGGCGGTGTGC 247983 33 100.0 32 ................................. ACGCCGACCAGCAGACCATCTCCGACGTGATG 247918 33 97.0 32 ................................C AGATCACCCCCGGCAACCCGAACAAGGCCGGT 247853 33 100.0 34 ................................. CCCTGTCCGCTTGCGGTAGTGATACCGCGAAGTC 247786 33 97.0 35 ................................G ACTCGCTTGGAGCCTCCAGTAAGCGACGTGGGTTA 247718 33 97.0 31 ................................C CAATTGGGAATACCTATGATGGAGCCAACAA 247654 33 100.0 32 ................................. GATGAACCAGCCCGGTGTGATAACCGGGCTGG 247589 33 97.0 32 ................................G CGATCCAGTGGCAGTGTTTACTGGATGTCACG 247524 33 97.0 34 ................................G ATAAGCCCGATAAGTTCTTCGCGTAGGGCGGCCA 247457 33 97.0 35 ................................C ACCTTCGCGAGCATCAACGACGCCGGGATGCCCAA 247389 33 100.0 33 ................................. GTTATCCAGAACGGCGCGCCCTACTCAGGCGGC 247323 33 97.0 33 ................................G ACCAGCAGATGAGCACCGTGCAGGCCAACACCG 247257 33 97.0 33 ................................C TACTGGTATGACCTCCTCGTCGAAGACCACCGA 247191 33 97.0 33 ................................T CTACTCCCCAATCGGTCGAGAGGTACAGGCGTC 247125 33 97.0 33 ................................C AGTATTGGACCGCGTATAGTGATAGCCATCAAC 247059 33 97.0 34 ................................G GCCACTCGCAATGCGTTGCACAGTCGGTCGAACG 246992 33 97.0 32 ................................G CGGACGACCCGGCCGGCTGGCGGCGCGCGTTC 246927 33 97.0 33 ................................C TTGACGGGCACAGCGAGGGCGGCAGCCAGACCG 246861 33 97.0 33 ................................G TTGCTGGTCATGGGTTACTCTTCCTTCTTGCTG 246795 33 97.0 33 ................................T GGAATACCGACGTGATACTTACCGGCCCCACCA 246729 33 97.0 33 ................................C GATAGTGTGATGGCACCTGAGAAGGGTGTGTTG 246663 33 100.0 31 ................................. CGCCACGAAGCCCTCGGCTGCTGGACGAGTG 246599 33 97.0 34 ................................T GATGAAGGCCACAACAATCTTGGAAAGCCATGAC 246532 33 97.0 32 ................................T CAAAGTTCGCGGCCGATTCACTCAAGGTAATT 246467 33 100.0 32 ................................. GCAAGGTCGCGTCCGTCGTCACGTCCAGCCTT 246402 33 97.0 35 ................................T TCCCGCGAATGGGAGAAACGCGCCAAGGACAACAA 246334 33 97.0 34 ................................T GCTCGGTGGTCACATATCCCTTGATGTTGCTGGA 246267 33 97.0 32 ................................C GACACGAACACCCGTTACAGCGCCTACCAGAC 246202 33 97.0 33 ................................T GGCTGAAATTGAGAGGCCTGGACGGCACCGTGA 246136 33 100.0 33 ................................. AGACACCCACGGGAATCGTAAAGTCCCAAGCAC 246070 33 97.0 34 ................................G CCACGATGCTACCCACGCTCAGCATTAACTCCAG 246003 33 97.0 33 ................................T CTGGCACACAAGACTGTAATGGGTTGAGTGGCG 245937 33 100.0 33 ................................. CGACCGTGAACCGTGTGGAGAACCGGCCGCAGA 245871 33 97.0 34 ................................T TGCCGGACACGCCGAACAGCGTGGCGGTGATATC 245804 33 97.0 31 ................................C CCTGCCCGGTACATGGTGCCGTGACATTGAG 245740 33 100.0 35 ................................. TCTGTGGCGGCGTGGCCACGGTTTTGGGCCTGATG 245672 33 100.0 34 ................................. ACAAGAAGGTCATAGAACTGAACCAGAACGGTTT 245605 33 100.0 32 ................................. AGGCGGGCGACGCCATCAACAGCCCTTGCGTG 245540 33 97.0 31 ................................C ACGACACCTACGACAACGTGTTTCCCTACGT 245476 33 97.0 34 ................................T GATGAAGGCTACAACGATCTTGGAAAGCCATGAC 245409 33 97.0 34 ................................G ACCAGGACGTGACCCGTGCCATCACCCGCGTCAA 245342 33 97.0 32 ................................G CCGTCGTCGGCAAGATCGACGGCCAGGGCATC 245277 33 100.0 34 ................................. AGGACAAGGTAGGCAAGGCGTCGGTTGCTGCCGG 245210 33 97.0 32 ................................T TCATGCGCTGCAGTGCCTGGCGTGACATGGCC 245145 33 97.0 32 ................................C ACGACGACTGCGACTGCCAGATCGTGCCCGAA 245080 33 100.0 32 ................................. CCATCGTCTTGCAAATGAACACGGCGCGTGAA 245015 33 97.0 33 ................................T GGAACGGCCAATTGTGGGGCATCAGCAACGCGG 244949 33 97.0 32 ................................C TTCCGCGAGCAGATCGGCCCAATCATCAGCGC 244884 33 97.0 35 ................................T CGGACTGCATGTTCAACAACCTGAGCTTCCGCCCG 244816 33 100.0 34 ................................. CCCAGGGCAAGGACCTCGCCAAGGACGTGGCCTC 244749 33 97.0 32 ................................C ACTGCGAAGGAGTATTCAAATGAGCAAGACCG 244684 33 100.0 32 ................................. TCACCACCGAACCATGCCAATACTGCGGCAAC 244619 33 97.0 34 ................................T GGCTCAGTTGGTAACTCAGATGGACAACGTAGAC 244552 33 97.0 33 ................................C CCGGCCTTGCTCGCACTATCCGCTGCGGCTTGA 244486 33 97.0 34 ................................T CGATGTTTGACCCGCGCGTGGTCGGAGAGGCAAG 244419 33 97.0 33 ................................C TCTTGAACAACTAAAAAAGAAAGAATCGCCCGG 244353 33 97.0 33 ................................C TCGACAAGGAAGCCGCCAGCAAGAAGGCCGATA 244287 33 97.0 33 ................................C TCGACAAGGAAGCCGCCAGCAAGAAGGCCGATA 244221 33 100.0 34 ................................. CGCCAGCAGTCCCGGCATCGCCACGCGGGATCGT 244154 33 100.0 34 ................................. AGACACCCACGGGAATCGTGAAGTCCCAAGCACC 244087 33 93.9 33 ........................G.......G CCATTTTCGGCACGCCGGACACGTGGAATCAGC 244021 33 97.0 32 ................................C CATCGCGCCGGACGGGTGGAAACACAAGGCGG 243956 33 97.0 34 ................................T GAAGTAGCTTGAGCGTTTGAGCCCTGACCTCCTG 243889 33 97.0 34 ................................T CATACATCTCTGTAATCTGATCGACCATAGGTTT 243822 33 97.0 34 ................................G GTGTCGGTTACGCCTAATGCTGTGAGATTTTTGG 243755 33 97.0 33 ................................T TGATCGCCGGCACCCAGATGGTGGTGATGTTGC 243689 33 100.0 35 ................................. TCCCCGTGGACAACCGCGAGGTGGCAGCCGACGAC 243621 33 100.0 32 ................................. GGCTATTAGGGCTCGTTCCCAGAGGCGTTGCG 243556 33 100.0 34 ................................. TCATACCACACTCGGTTACAAAAAGTAACCGGCG 243489 33 97.0 34 ................................G ATTACAATGTTTGGACGCCAAACACGGTAATTAA 243422 33 97.0 32 ................................T GGACGGGCGCGGGGTCTACCGCCAAGGTGGTG 243357 33 93.9 34 .........T......................C CCTTGGACGGTCAGGTAAACGGCAAGACCGGTCA 243290 33 100.0 33 ................................. ACACGTTGGCCTTCATTGAATCGGTGAAGCCCG 243224 33 97.0 33 ................................G TATACCGTATGTCTTACCTAAACCACGCGCGCC 243158 33 100.0 34 ................................. TGGTCGGGATGATGGCGTCCATGATGGTGTCGCC 243091 33 100.0 32 ................................. TCTCTGTAACAAAAATAGAGCGTGTCGCTTGT 243026 33 97.0 34 ................................T CATTTGGCGGACGCGACGGCGCGAACCAGAAGAT 242959 33 97.0 33 ................................G GGCTCGTTCCCTTGCGGCTCCTGTGCCTCGTTT 242893 33 97.0 33 ................................T TCTCGTGGGAGTCCGCCGATCGGGCGTCGCGGG 242827 33 97.0 34 ................................T CGAAAACGCGCCCCACGGCGGACGTGGTGGGGAA 242760 33 97.0 33 ................................T GCGGACAATCGACCCGCCTGCAGGACGGTTTCG 242694 33 97.0 32 ................................T TCCGTTCGCTCGGCCGAATCCTCCTGGGCATG 242629 33 100.0 32 ................................. CCACCTGCTGTACCGTGCCACTGTTCGGGTCA 242564 33 97.0 36 ................................G CCTATCATAGTGTCGCTGATTAACTGGTTATCTGTA 242495 33 100.0 33 ................................. ACCGCGTCCGACCGGAACGTGGCCGTGCCGTCG 242429 33 97.0 32 ................................C GTATCGAACCCGCCAACGGCGTGAATAATCTC 242364 33 97.0 33 ................................G ATGACCTGTACGAAGACTGATAATCAGAAGGGA 242298 33 97.0 33 ................................G AGGTTGAGGACTGCGGGGGCACCACCCGTTACG 242232 33 100.0 36 ................................. ATAACGGGTACGCGGATACGGTGTATCTGACGAACG 242163 33 97.0 34 ................................G CCCTAAGCATGGCAAGGCTGATAGTCGCGTGTTG 242096 33 97.0 34 ................................C TCAAAACGGTACGTCAAGTGAGACAGTTGCAGGT 242029 33 100.0 33 ................................. ACGATCCTTTAAGGAGGAAACCATGACCGCGCT 241963 33 100.0 33 ................................. AGCCGCAAGACATCAGCCTAGACGATTATCTAG 241897 33 100.0 33 ................................. ACTTGCATCATAGGCGTATGCGCTCACACTCGT 241831 33 100.0 33 ................................. CCTGCACTTTGCGTGGCAGAGCAGGATACGCAT 241765 33 97.0 33 ................................T GGAAGCGGTCGACACGATCCTTGGAATCGTGGC 241699 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 163 33 98.0 33 GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Left flank : GACGAATCGCAAGATAGCCTGCGTTACTACAATTTAGGGGCGAAGTATTCTTCGAAGATTGAGCATCGCGGAAGACAGCGGCACCTGCCAATCGATGACGTGATGATGCTCTAATGTCGGTTCGTGTGACGGTCTTCCATGATGACTGGGCAATGCAAAACCTTACTGTGATGAAGACCAAGGTGGATAAAACGAGGTAGGACAGTATAGGACGATACGATTAAAATCGTGGCTGAGCATCGATGCTTGATGCTGCAGCCATGTGACCAGCGCGAACTCTGAGTTCTCATGAAATACTTGTTCTTTCGCACTGAGATTAATGAATGCTTGGAGACTGATTATGTTCTCCTCGTCGTTTGATAACTCAAAAGTGGATGGTCTGTTGATGTTTTTGGTTCGAGAATTTGTGTATTGAGCGATGTACATGGATTTTCGCGATAAAATCAGTTTTGAGAACAGACGGAGCTTCCGTATTATGGAATGCTATGCCCATTCTCGCG # Right flank : AGAACAGATTCGTAGGACACTGCGAAAAACAAATAGGGTGCTTTCCGCCATCAACAGCGGAAAGCACCCTATTCTTATGGTATTCTTATGATCTCTCTGTCCTAATTAGAGCACCTCACTCCCCAGCAATCGCGGCCTTGAGCTCCTCGACCTTGTCGGTCTTCTCCCACGGGAACTCAACGTCTGTGCGGCCGAAGTGGCCGTACGCGGCGGTCTTCAAGTAGATCGGGCGCTTCAGGTCGAGCTCGTCGATGATGGCGGCGGGGCGCAGGTCGAAGACCTTGCGTACGGCGGCGGCGATCTGGCCGCGCGTCACGCCTTGCTCGGTGCCGAAGGTCTCCACGTTGACGGATACCGGGTCGGCAACGCCAATAGCGTAGGCGATTTGGATCTCGACCTTGTGGGCCAGGCCGGCAGCCACGATGTTCTTCGCAACCCAACGGGTGGCGTACGCGGCGGAACGATCGACCTTGGACGGGTCCTTGCCGGAGAACGCGCCA # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 544997-545341 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDIG01000002.1 Bifidobacterium longum strain DS7_3 DS7_3_2_length_585361_cov_98.260122, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 544997 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 545063 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [545069] 545147 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 545207 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [545255] 545255 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 545312 27 85.2 0 ..............C.....C....CG | GC,C [545330,545334] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 88.3 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //