Array 1 3292402-3290279 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018254.1 Acinetobacter baumannii strain AF-401 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3292401 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 3292341 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 3292281 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 3292221 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 3292161 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 3292101 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 3292041 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 3291981 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 3291921 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 3291861 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 3291801 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 3291741 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 3291681 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 3291621 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 3291561 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 3291501 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 3291441 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 3291381 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 3291321 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 3291261 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 3291201 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 3291141 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 3291081 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 3291021 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 3290961 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 3290901 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 3290841 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 3290781 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 3290721 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 3290661 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 3290601 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 3290541 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 3290481 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 3290426 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 3290366 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 3290305 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 36 28 98.4 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : GAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGCA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3297492-3301482 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018254.1 Acinetobacter baumannii strain AF-401 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3297492 29 86.2 31 ....G.......CC..............C GACAGTCCAGTTGATCAGATCTTGATTAGAC 3297552 29 86.2 31 ....G.......CC..............A ATGACATGGTTCAACAATTAAATTCATCTCA 3297612 29 86.2 31 ....G.......CC..............G TTCTTTTCTGCAATATGTGCCATTAGGTATT 3297672 29 86.2 31 ....G.......CC..............A TTTTAGATGAAACAAAAGATAGCAGGATTAT 3297732 29 86.2 31 ....G.......CC..............A GACCAAGCGGATTGACCGTATTGATAAATAA 3297792 29 89.7 31 ....G.......CC............... TCTGCAATACAAATCACTGGATCAGCCAGGT 3297852 29 89.7 31 ....G.......CC............... GAGTCTTTGATTTCCCAAATATTACTTGAAA 3297912 29 86.2 33 ....G.......CC..............C CTGAAAAATTTCACTGTGTCCATTTCGTTATTA 3297974 29 89.7 31 ....G.......CC............... ATGTCTTTAAATTCTGAAAAAACACTTGTTC 3298034 29 86.2 31 ....G.......CC..............G AAAAAATTGAAAACTTTTTAGAAGTAAATGA 3298094 29 86.2 31 ....G.......CC..............G CCACACATGCCTAAAAACGCAAGTGCGCTCG 3298154 29 86.2 31 ....G.......CC..............A TTATCAGATAAGCCTTTTATGAATGATCGTT 3298214 29 86.2 31 ....G.......CC..............A TTAGCTATTAGCTTTTTGGCAACAACAACAG 3298274 29 86.2 31 ....G.......CC..............A GTTCATGAAAACAGCTTTAAAAAGAAAGCAC 3298334 29 89.7 31 ....G.......CC............... CCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 3298394 29 89.7 31 ....G.......CC............... TGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 3298454 29 89.7 31 ....G.......CC............... GGTACGACAACTACGAAAAGCTGAGCAAAGT 3298514 29 89.7 31 ....G.......CC............... CAACTTAAATGGATGCTCCCCGCGGTGAATT 3298574 29 89.7 31 ....G.......CC............... TGATTGCTAGACGGATTTTTAGGCAGATCAT 3298634 29 86.2 31 ....G.......CC..............G AGTTTAATGCGCTATATGGCGACGAGGATTT 3298694 29 86.2 31 ....G.......CC..............C ATGCAATCGCGTTGATTACCGCAGCTTCGAA 3298754 29 86.2 31 ....G.......CC..............A TGAGCCGCAACCATACGGTCTATGACTTCCA 3298814 29 86.2 31 ....G.......CC..............A TAGCGCCCTGCTCTATGTTGTCACTTCCGAA 3298874 29 89.7 31 ....G.......CC............... CCAAGTGAATCGGCTCCTAATGCAAATGACC 3298934 29 89.7 31 ....G.......CC............... GAAAACCAATATGCTGCCTAATTGCCATAAG 3298994 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 3299054 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 3299114 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 3299174 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 3299234 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 3299294 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 3299354 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 3299414 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 3299474 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 3299534 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 3299594 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 3299654 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 3299714 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 3299774 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 3299834 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 3299894 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 3299954 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 3300014 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 3300074 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 3300134 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 3300194 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 3300254 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 3300314 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 3300374 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 3300434 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 3300494 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 3300554 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 3300614 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 3300674 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 3300734 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 3300794 29 100.0 31 ............................. GCAGCTACTCGACATGTTGGTAGGGCAGATG 3300854 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 3300914 29 96.6 31 ............................A GATTGAGGCGATTTTTATCGCGGACATTGCC 3300974 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 3301034 29 100.0 31 ............................. CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 3301094 29 96.6 31 A............................ TATTATTAAACGGGAAAAGTATATTCTTGCT 3301154 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 3301214 29 96.6 31 ............................A TCATCAATAAGTTGGCCTTGATTTAAATAGT 3301274 29 96.6 31 ............................A GATACAAACGAGTTCGCATCTCGACCAGAAG 3301334 29 96.6 31 ............................A TTATCCAGATAAAACCATATCTACAAAGTGG 3301394 29 100.0 31 ............................. CAACCTGAACACAGACATACATGTTCTATTG 3301454 29 86.2 0 ...GC...................AT... | ========== ====== ====== ====== ============================= ================================= ================== 67 29 93.8 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACAACTATTTTAAACTATTGATTTTATAGCTAGTTTTTTGCTGTATAACATGCTGGTATAACTCATGTATAACATTTAATTTTGATTAAGTATGATTAACAACAGTCTCTTTTTTGTTCAAGTCCCACTATAGGAGTTGAACTCATTTTTAAGAATTATAGACCATTCCCGTTTTATTTTAGTTTACTATAAAGATCAATATAAAAATTATGATAGAAACGCGTTCTTTTTCTCTTTATTTTAGGGCTTACAACTGAGCTGTATGTAACCGAAGTTTCCTTTATTTCTTCCTCAATAAATCCTAAAACTTCTAGATCTTTGAAATCACTCACTAAAAGATTTTCAAATTCCCAATATTTGTTGTAATCGGTTGCATCTTTTGGCAATCCTTCACAAGGTATGGATTGTTCACGAAGCCTT # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //