Array 1 866636-864880 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOEF010000001.1 Desulfofundulus sp. TPOSR contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 866635 30 100.0 37 .............................. TCCAAACCAAGATCTCCCAATATTTCTTCTCTAATTG 866568 30 100.0 36 .............................. GAAATTTTCCCCAAAACAAATAAGCCCCATACGGGG 866502 30 100.0 38 .............................. CCTATAAGCATATGCGGCCCATTTCCTCATAGCGCGGG 866434 30 100.0 36 .............................. GGACTATTTTATTTTGCATTTCAAAATCAATAAATG 866368 30 100.0 36 .............................. GGGGTTGTTCAGCGCGAAGGATAACCTGGAAAGCGA 866302 30 100.0 36 .............................. GTCAAAGTAGCCATATTAATTCCCCCTTACTTAATT 866236 30 100.0 36 .............................. CGTTATATTCCCCCTTTCACAAGACCTGTTTTTAAC 866170 30 100.0 38 .............................. TCTTGGTAGTGATTACTTTTTTGCAAGGTGCTATGCAG 866102 30 100.0 35 .............................. CTGGGAATCAGACATATTTGTAAGCATACACTGCA 866037 30 100.0 36 .............................. AGCGTACTGTTTGGGCATCAGGGCGTGTTTCCCCTG 865971 30 100.0 36 .............................. CATGAACCCATAAAATCCTTTTATTTTGCAGGTAAA 865905 30 100.0 36 .............................. GGGCGCTGGCGACAGTGCCGGTGTGGATCTGGCTGG 865839 30 100.0 38 .............................. GCTCATCACCACTAGGAAGCAACTGCTTCATCCGGCTC 865771 30 100.0 36 .............................. GGTACAACCACAACTTTTACATCTTTGCTGTTGCAC 865705 30 100.0 37 .............................. GCGGTCGATGCCAGCGGCAATAAGGGGGAAGTCCTGT 865638 30 100.0 36 .............................. ACATAAGAAGCAAAGAAGGTATAGAAGAAGTAAAAA 865572 30 100.0 36 .............................. TTCGGGGGCGAACGGTAAAATAGCGCCCCCGAAATG 865506 30 100.0 36 .............................. CTCCGGGGTGGCCGCCCGGAGCCTGACGAGGCAGGC 865440 30 100.0 37 .............................. CAATTGAAGGTTTTCCCGGATGTAAAAACCCCGTTAT 865373 30 100.0 37 .............................. TATTGCAGCCTACACGGGAATGCGCTTGGGGGAAGTT 865306 30 100.0 37 .............................. CCAGTTTACTGCTTCCTGTTTGGTACGGAAAACAGGA 865239 30 100.0 36 .............................. CAGGATAGCCCCGTTCTGGCTTTTTTGCCAGGTTTC 865173 30 100.0 36 .............................. GCGAAGCGTCGGGGGGTGGCCCAGCCGCTCCTGGTC 865107 30 96.7 36 ........................C..... GGGTTAAACCCTATACCGTAGGCGGCTTTGCCGGGC 865041 30 100.0 36 .............................. AGAAGTACGAGAACTGGGCTCGGGCCATGAGCGAGG 864975 30 100.0 36 .............................. CCTTGAATGAAAAGCATAACTGCAAGTTGTTTACTC 864909 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 27 30 99.9 36 GTTTCCAGCCTACCTATGAGGGATTGAAAC # Left flank : GGTAAAAAGCTAAACCAGGCCTGGGCAGAAAAGGATCACCGTAAGGCTCTGAGTGAACTAAACAGGCTGGCCGACACTCTTGAAGAAAAGTACCCCGGGGCGGCAAGGAGCCTGCGTGAAGGGTTGGAGGAGACACTTACCATAACCCGACTGGGCTTACCTGAAACTCTGCGGAAGAGCCTATGTTCGACGAATTTGATAGAATCAGCTTTTGACAAGGTTAGGGTTGTTACCCGGAACGTAAAGAGGTGGCGCAGTGGGATGCAGGTTTTGCGCTGGGCAGCAGCCGGGCTGCTTCAAGCAGAGAAGGGGTTTCAGCGTCTCAAGGGATATCGGGAGCTGCCTTTATTGGCCACAGCGTTGCTTGAAGTCATCACTACTCCAAAATCTTCCATGGCAGTGAAAACAGCTTAAAATCGCGAAAAAGGGCGCTACCGAAATTCCACGATATTTAGGACATGCTCTCTTTGAGTTGCTCGCTCTTATCTGGAGCAATTAGT # Right flank : AGGTCAATCCCAAATGGTGGGGTCCTCCCTGTTTTTTACTATTTTCCGAAAAGTGTTGCAATCACTCTCTTAACCGGTTATATTTTGATTAAAAATACACTTGGGAGTGACTGCAATGCATATAGTAAATGTGACAGATCTGCGGAGGAACATTCGCGAGGTTCTGGCGGAAGTAATTCGCTCAAAAGAACCGGCGGTAATCCTTCAGCGGTCAAAGCCGGTTGCTTACCTGGTCGACGCTGAAACGTTCGAGAGATCGCGAAAGTTCGATGAAATGGACGTGTTGACACAAACCAGGAAAAAAAGCCTGGAGAGGATGCTTCAGTTAAGGGCCAAGGTGGCGAAGAGGACAGGTATAAAGAGTGATTCTACAAAACTGATCCGTGAAATCCGGGAAGGATTGAGTCGTCATGAGTAATTATATCTGCCTGGACACTTCGGTTTTGATCAAGGTGCTCATGGAGGAGGAAGATAGTGACAAAGCAACGACGCTTCTGCAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAGCCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 869951-868122 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOEF010000001.1 Desulfofundulus sp. TPOSR contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 869950 30 100.0 38 .............................. TGGTCCAGATGGATGCAGCCGTCGCAGTTATCGTTTTG 869882 30 100.0 35 .............................. CGATGATATAATTGGTGTCAATCACTGTATCAGCC 869817 30 100.0 39 .............................. CTTATATTGTCCATGGTTTATTTCATCTCCCTGTATTGG 869748 30 100.0 37 .............................. TAATAATGCTTGTTTACGAGTATGATAATCTGCTTCA 869681 30 100.0 36 .............................. CAGATCCACAAACAGGAGAAAAGGGTGTTTTTGATT 869615 30 100.0 39 .............................. TAGGCAAAATTGTGCGCCGACAGGCTGCATGGGGAGTTC 869546 30 100.0 37 .............................. CCAAAGTGGAGCCTGTGTGATGGAGGTGTGTCATGAA 869479 30 100.0 35 .............................. CCTCGCGGTAGCAGTTGGCGTGGTACGTCTTGCCG 869414 30 100.0 37 .............................. ACTGATTCCGGAATCATTCTCTACCAACTCCGGAGGT 869347 30 100.0 36 .............................. GCTCCTTCAGGATGCAGCCCAAAAGCGCCTTTTCTA 869281 30 100.0 37 .............................. AAATAGTTCATTCTTGTTGACAACAACGCAAGCAGTA 869214 30 100.0 37 .............................. AACGTTCTGATGGTGTATGCTTCTCCGTTTAGGTAGA 869147 30 100.0 37 .............................. ACGTAGGCTGCATGTTTGGAACGTCCATTGCTCCCGT 869080 30 100.0 35 .............................. AGAAATACCGGGAAAAGGTGGCTGCTGGCGGCCTG 869015 30 100.0 36 .............................. TCCCAGGAAAATCCTTACGGTGAGTAAACCCGGGCC 868949 30 100.0 37 .............................. AAACAACGAAAAGATGTAAACGCATTTCTGGCAACAA 868882 30 100.0 35 .............................. TGGCATGGATAATCTCGCTTGAGAGGGTGTTTTGC 868817 30 100.0 36 .............................. AACATGTTCTGAGAAAAGTGGAATTCGCTATGATGG 868751 30 100.0 37 .............................. AATACACATATCGGTTTCATTCTCACATTCCCCTTTC 868684 30 100.0 37 .............................. ATTATGGCCCCGTCTTTGGCTCCGTCTATGACAGGCT 868617 30 100.0 36 .............................. GGGGAAGGAGGAAGAGTATGAAGCGTTTTCTAGAAA 868551 30 100.0 37 .............................. GCCTCGGACACTACCACATACACATCTACTGGCCTCG 868484 30 100.0 36 .............................. CGCCTTTCAGATTCGTCTCGTGCTCGATGTCGTCAT 868418 30 100.0 36 .............................. AATGGGACATTGGCGATGCTGGACTGTTTTATCCGT 868352 30 100.0 37 .............................. ATTGAACTTGGGATTATCCCACGAAAATCTCTCACGT 868285 30 100.0 37 .............................. ACTTGAAAGGGCCGCTCATGGACGAAATTAACGAAGC 868218 30 100.0 37 .............................. CCTTAAGCCTTATTCTTTGCAATATTGAACTTATTTC 868151 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 28 30 100.0 37 GTTTCCAGCCTACCTATGAGGGATTGAAAC # Left flank : CTGGTAGTAATCGCCTGCAAACTCCTCCGGGTAATGTTTACCCTGACCAAAGAAAAACGCCTCTACGACCCGGAGAAGGTCTTGGGCAGCTATCGCCGGCAGCAACTGGCGACCTAAAAGGCTCATGCCCTTAGGGGGGTGCCCCTTCTGAAAAGGTGCGGGGGGCCTCCTTCTACCCACGTAAAAGAATCATCAGCAAAGGTAAAAAATCTTGGGTGGGGGAAACCGAAAAAACTTCCATTAGGGCATGACCCTGCTTCTGAGTAACGGTGCCCCACCCGCCCCCATTATGCTGAACGAAGGAATGTAAGGGCTTTTGACCCCGGGAGACATGATAGGGTAAGCAGGGGGCGAACAGGTGGGTTAGACCACCCAAGATAAATTTTTTAAAAATGGCAGATAGAGTGAGCTTTTTAGAGCATCAATGAAAAATATTGAGATAGGAAGATTATCCCTTAAACTTGGGTATTGTGCCAAGGTGGGTTGTGTTTGACGCTTAC # Right flank : TTCTTTGAGGGCGTTGTCCCAAAAATCGTGGAAAATGAAGGTGGCGGCCCTCAATCCCCTGTGATATAACAGGGGTAGACAAACCAAACCAAAGGAGGTAACCGCCACCAATGCCAGTATATCACAAGAAGGCTAAAAACCCAATATCCCCTGATAGTTTTTCTAACCTGCCCGACCATGTACAGGTATCTTTGAGGGAAGCTATAGGCAGTGCCAAGGATGGCCTCCTGGCCCTCTCCATTACCGTGGGACTGAATGTTCTTAAGGCCATGATGGAAGCTGAGGTGGCCGAGATAGTCGGACCTAAAGGCAAGCACAACCCAAACCGGCAAGCTGTGCGCCACGGGAGCGAGAAAGGCAGCGTAGTTCCGGGCGGTCGGAAGGTAGCTGTCCGACGGCCCCGGGTACGCACCACAGACGGCAGAGAAGTAAGGCTTAATACCTACGAAGCTTTTCAGGACGAAAGGTTCATTACCGAATCGGTTTTGGAACGTATGATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAGCCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 3 873549-872055 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOEF010000001.1 Desulfofundulus sp. TPOSR contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 873548 29 93.3 36 ....A....-.................... GCAGCCACTTCCATGCGGCCCGAACCACGGTCTTTT TA,GGG [873538,873541] 873478 30 100.0 37 .............................. ATTCCTGCCAGAAACCACAGTTCGCCAGTTGTAAATG 873411 30 100.0 36 .............................. GAATTTGGCTATCATGTAGCACCCACGGAAGGCCCC 873345 30 100.0 36 .............................. ACTGAAACCCTGAGGTGGTTAGCAAGTTCGGTAACA 873279 30 100.0 37 .............................. TTGTGTGGAGTGCTTTCAGTATAAGGTTGCCCACTCC 873212 30 100.0 36 .............................. CCGGGGAGCCGGTCCAGCCATTTCAGAGAAAACTCC 873146 30 100.0 36 .............................. CATTCGTTTGCCAACTCGATTTTGCGCGGTTCCCTG 873080 30 100.0 37 .............................. CTCCGCAGGCAGGCATGTTATCCTTTCCGTTAATTTC 873013 30 100.0 35 .............................. ATTAATTCCCCCGTCCGGGTACCGGAAGAAAACTT 872948 30 100.0 37 .............................. CCAGTAGAATCCGGATTCTCCCTTCCTGAATCGCTCG 872881 30 100.0 36 .............................. GGATTTTTGCATAATCGGAATCGTCGTTAAAGCACG 872815 30 100.0 36 .............................. GTAATAGCAGCCGTTAAAAGCGGTATATTGGCCAGA 872749 30 100.0 36 .............................. CAGTAACCGTTGTCGTTTTGCTTACAATTTCTGCAT 872683 30 100.0 38 .............................. CCTTCAGCAAGGAAAGGTTCCTGACACACATCCCGCCG 872615 30 100.0 36 .............................. AGATGATCCGCGCCGTTGCCGACCGGATCCGCATGA 872549 30 100.0 36 .............................. CCGGCGGCCTGGCACTGTGCCCGGAATGCCACGACG 872483 30 100.0 36 .............................. CCAGGCAGGCGTACCCACCTGGTAGGCTGATCAAGG 872417 30 100.0 36 .............................. TGTAGGGGTATATACCATACCGGTGTGGATATATTT 872351 30 100.0 36 .............................. AAGCTTACGAAGACATGCACGGCCTCCGAGTGCGGG 872285 30 100.0 37 .............................. GTGTTAGCTTGAGATCTTATTACCTCCAACTGATGGA 872218 30 100.0 36 .............................. TCGGGTACACTACTTCGGTGACTGCATCCACTGTAG 872152 30 100.0 38 .............................. GTCCTATCGACCGAAAGGATAGGGTCGCCGCCCACATC 872084 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 23 30 99.7 36 GTTTCCAGCCTACCTATGAGGGATTGAAAC # Left flank : TGTAGAAACGACCATCCCTGGCCAGGCGGGCAATTACCCCGGCATCCTTGTCATCCCGTTTGGTTGGTGAATTGTCGTCCAGTTCCTTGGCCTTTTTGACATGGTGCGGGTTGACCAGGACCACCGTAATCCCTTGCGTTTTTAAGACACAGGCTAAGGGGAGCCAGTAATGGCCGGTAGGCTCCATGGCCACCAGAACTTTAGACAGGCCGTGTTTAAACTGGATCGTCCTGATTTGCTGGACTAGATCACCAATGCCGGATATGGTATTCTGGAATGGGAACGGCTTGTGCAGTCCCTCCCCCCGGAAATTGATCATTTGGGCGTAGTGGGTATGCTTGGCCACGTCTACACCCACAATTAAGGTTTCAGGTGTGATCATGGCAAGCTTCTGGGAAAGGGGATTGTACATCGCTGATCCCTCCTGGTATTGGTGGTTTTGGGTTTTGGCATTTACACCATACCAGGATTTTTTCTTTTCCTCAAGCCCCACTACTCCT # Right flank : CCGAACAGATTTATCAGGCATTTGCCAGGCAGGACGGTTTTACCTCGATGTTGGCCGGTCCTATTTTGATCAGTAAAGTATGGTCCTCTTCTATAAATGACTGGTTGCTTATTTCCACCGGCAGCCACCGGTTTGATTTTCCTGGGGTAACTCCGTTCCGGTCTTTAAACTTTCGCAGCCAGTACCATAACTGCCTGGGGCTGATGCCTTCATGGGCGGCGCACCATTCTCTGACGCTTTGCCCACTCATCCTGTATTCGGCTATTCGGGTTTCCCATAGCGCTTCCCGTTCGGCTTTGGTCATAAGAAAAAATCCTCCTCATCGAGCTTATTTTTTGAGCATTCCTGTAATGCTTTAGAGAGGGGTTGACCAATAAAAAGACCTCCTGGTACAAAAAGGTTAGAGCAAATTCCAAACGTACCGGAGGTCGAGATTAATGACGAAACGAAACAAAAACCTAAAAGAGATTCGCAGTGTTCACACCCTGATTGTAGGCGTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAGCCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 4 877156-875460 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOEF010000001.1 Desulfofundulus sp. TPOSR contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 877155 30 100.0 38 .............................. AAAGTTCTGGGCGATTATGGATTTACTGATTTATCACA 877087 30 100.0 36 .............................. TTCGAGGGGATTAATTTGGTATCCCTTAAGGCGGCC 877021 30 100.0 36 .............................. TTTGTTGCGGGTATTGTGGTTGCAGGGCCTTCAGCC 876955 30 100.0 37 .............................. GACGCACTGAAATATGCTTGGATTCCCAGGGATGTAA 876888 30 100.0 38 .............................. TCCAAACGGCTCTTTACATGCGACACGAGAAGATGCAG 876820 30 100.0 37 .............................. TCAAATCTTTGCCGATACGTCCAGCCGCACTTCTCAC 876753 30 100.0 35 .............................. CCGGTAAACTATCCTCGGAAGCCAGGCCAAGCGGC 876688 30 100.0 35 .............................. TGCATATACCTCTGCACGCCACGGCCCAGGGGTAG 876623 30 100.0 35 .............................. CCGACCTGGCCGACCAGGAGGATACTGCCCTGGTG 876558 30 100.0 37 .............................. AAATGCAATACCTTTGGTGTTTGCTCGAAAACGAAGG 876491 30 100.0 36 .............................. AGACGTGCTCTTCCCAAAACTGCTTTTCTGCTTCAA 876425 30 100.0 37 .............................. CCTGTTTCTTTGTCTACCCATGTCAGTATTGCCGGTG 876358 30 100.0 37 .............................. ATGAGGGATACACCCTTACGAACTGCCAAAATCACGC 876291 30 100.0 36 .............................. TTGGCCTAATGTGCTCATATGGAACACCCTTTATAT 876225 30 100.0 38 .............................. GTAGGTGGGCGCTATTTGTTGCCCGCCACGCCCACCGG 876157 30 100.0 37 .............................. ACGTGGGCAATACCCAAGGTTCGGTAGACGGCTGGCA 876090 30 100.0 39 .............................. AAGGGGAGATGCTGCCCTACCTGCTAGCCCTGCCGCCGA 876021 30 100.0 36 .............................. TATGTTCTTATTAGCCGTATTATGGTATCGGTTCGG 875955 30 100.0 36 .............................. ACGCCACACCTTCGCCACCCGCCTGCTGGAGTTAGG 875889 30 100.0 37 .............................. ACTTCTGCCACATGCTTATAGTGTGAAGCTTTCCCGG 875822 30 100.0 36 .............................. ATGCCTAACCGCGTGTGATAATCGGGCAATATGGCG 875756 30 100.0 37 .............................. TTTAGAGTGGAGACGACCAAAAATATAAGAAATCTAT 875689 30 100.0 37 .............................. TCCGGGTCGCCTACGCAGAACCAGGTCAGCGGTCCCA 875622 30 100.0 36 .............................. TCGTCAAGACCCCTGACACGGAAGGAAAACAGTTTC 875556 30 100.0 37 .............................. CCAGTTGCTTGTATTCGTACAACCAGTGTCGTAAAGG 875489 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 26 30 100.0 37 GTTTCCAGCCTACCTATGAGGGATTGAAAC # Left flank : TGGCTATATCATAGGTTTCCAGCCTACCTATGAGGGATTGAAACGTTTCTCAAAGTGATCGAATGATTGATAGGCAAATCCGGTTTCCAGCCTACCTATGAGGGATTGAAACTAAGCGATATCCGGATTAACAATAGTCCAGCGCACCGTTTCCAGCCTACCTATGAGGGATTGAAACCTGGGAGGATGTGAACCTAGAGGAAGGTGTCCTGCGCGCTCCTCTTTTATGTCCTGGGAAACCAGAAATATGCTAAAAGAGAACTGATGGGTATAAAGAAAGGTGGGGAGGAGTGGATCTTTTAGCAGGATTTTTGTCGTCGATGTCCAATAATGCAAAAAGTGCCGGGGAACGACGACAAGCAGGTAAAACTTCGGGGGGATTGATAAGCCGCGCTGGTCGAGGTTCCGGGCCGTTTTGCACCTGGTAAGCAGATTGCCGTATTTACGTTTGTGAAACCGGTCGTAAAAAGTGAGCCTTTATACAATGCGGCCCAAACGGG # Right flank : CAATAGAGCGTCTCTCTCAATTCACCGAAAACAAATGTTTCCAGCCTCTCTCAATAAGGTTGAATAATCTTCGTTAATCTCACAATTTCAGCCATTTTCATTTTTCAGCAGGGCTATGACTGATAATGATGCCCAGTTATGCCTTTGTCTGGAAGGTGGTGTATACAGAAATACCAGGGCTGCTTGTGTGACAATTTTTCGCGCGCTCTTTTCTCCACACTTTACCCTGGCGATATACCCTCTCATGTCTCCCGGGATACCAATGAACCGTACCGGCTCCGGACTTTCCTTCGTCCCACCTGTCCAGGGGTGGAGGCCATTGTGCTACCTAACAGGGTCTACTTACCCTCATGGTTTGATTTTTGGCTCTCCGCGCTGCATGATTGTCAAGGTCCATGTGGCAAGGGCATTATAACGGTACAATGTTATGATGCAGCCAGCACCTTCCGCCTGCAGCCCGGTAGAACGGAAGGAAAGCCGTGGCAGGTACAGGCCGTTGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAGCCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 5 882347-877478 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOEF010000001.1 Desulfofundulus sp. TPOSR contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 882346 30 100.0 35 .............................. TATAAAAGGCAGCTTAAAAAGAATGGTGTTAAACT 882281 30 100.0 36 .............................. CGTAATCACCATCCAGGATGCCGGCTCCAATCATGC 882215 30 100.0 36 .............................. CCTGGGAGGAACTGGATTATATCATTTACTACAATG 882149 30 100.0 38 .............................. TCCAGGTGGCGGGGCAACAGGGACAGGGTGCCGTAAAC 882081 30 100.0 37 .............................. CGGAAGCAACTCAGTCCCTCGCACCACAACCCAGCCC 882014 30 100.0 35 .............................. TTTAGTTTAGTTATTATATTAGTAGTGTTGGGTTC 881949 30 100.0 36 .............................. CTCCTGCAGTGCTAGTTGTGCTTTCAGTTTTTGTTT 881883 30 100.0 34 .............................. TTTTTGCCTCCAAGATTGCCGGTATATTTTTCGG 881819 30 100.0 36 .............................. GACCCTGCTTCCCACCGCACAATGTAACCAGCTCCC 881753 30 100.0 36 .............................. ACATCCCGGTCAAGCATGTTAGGATTCCTCCCGATG 881687 30 100.0 35 .............................. TGGCTGGAAAGCTACGACATCAGGGCAGTCGACAG 881622 30 100.0 36 .............................. CTATGCCAAACCCCTGCAACACGAAACCAGGCATGG 881556 30 100.0 35 .............................. GATTTTCCAAGAGCTTTCATGCCGGAAGGTGTGTG 881491 30 100.0 36 .............................. CCGGTAAATACCTCGATGTCAGATTCAATAGGACTG 881425 30 100.0 36 .............................. CACGTGACATAGCCGGGAAAGCCGGGTTGAAACTCC 881359 30 100.0 35 .............................. AGTAAGTACGGTGTGATGTCTATCGAGATGCAACG 881294 30 100.0 37 .............................. ATGGTGACATCTTCCGTGTCGAAAAACAACAACTCAT 881227 30 100.0 35 .............................. TTTTATTCCGGTTGGCCAGATTGTTACACTACTTG 881162 30 100.0 36 .............................. AAGGGCAGATCCTCGGGCTTATCGGCCAGGTAGAAC 881096 30 100.0 36 .............................. GTTTCGCACGTCTTGCCATTATAACTCCCCCTTATT 881030 30 100.0 36 .............................. CTGTTTCGTAGCCTTCACTTTCCAGGTCAGATAGCA 880964 30 100.0 36 .............................. CCGCAAACAAGGTCAATTGTTCGCCCGGCTTCATCA 880898 30 100.0 36 .............................. GATTTTTGTACGGGAAAATCCCTCCATATTCTTTCT 880832 30 100.0 36 .............................. TGTTTCTTTAACCACTCTTCTTTTTGTTGTTTATAA 880766 30 100.0 39 .............................. CTCTTGACCCTTTCCCATGCCTTTTGGTATGCAATTTCC 880697 30 100.0 38 .............................. CATCCGGTTACGGCTCGCAATTTTTCTTCGGGCCACAT 880629 30 100.0 37 .............................. CGTCTGGGACAACGAGGCCAGCACGGAGATTAGCGGG 880562 30 100.0 38 .............................. CCTCCTATTCGCCCGAAGCTCGGGCCTGTATTTCTGTG 880494 30 100.0 36 .............................. GCTTGAGATCTTACTACTTCAATTTTGTGCACTTTG 880428 30 100.0 36 .............................. GCACACTCCCGAGACTGTGCTGGGAGTCATTGGACG 880362 30 100.0 36 .............................. GATTCAATAGGACTGCGATAGAGAAAAACCCGGATC 880296 30 100.0 37 .............................. ACTGCACCTTGCTCAGAGCAACCAGCGCGGCTCTGGC 880229 30 100.0 37 .............................. TTTCCCCTTTCCGCCCTTCCCCGGGCTAATTTTTCGG 880162 30 100.0 36 .............................. CGAGCCTAAGGCAGTGTGCAACCCGCAGCGTTTTGC 880096 30 100.0 35 .............................. ACGGCAACGGTATCCTAGCGACCGTAACCCAGCAG 880031 30 100.0 37 .............................. ATGCGAGCCGGCATATGGTGATGCCCAGAGCAATTTG 879964 30 100.0 37 .............................. AATACTTTCGGTACCGCTGTGCTCCTCCCGGCCTCTG 879897 30 100.0 36 .............................. TCGCTCCAACCGAGCTTCTCTTCAACAGCCCGGCGG 879831 30 100.0 35 .............................. CTGGCCGGTAACCAAAGTTTTGATCTCTTCGGCAA 879766 30 100.0 36 .............................. CTTTTTATTGAACCCTGATCCACGCCATGCCCCGCC 879700 30 100.0 36 .............................. TCGGGAAATTCTCCTGCAAGTGTGCGGTGATATTTC 879634 30 100.0 37 .............................. ATCTAACTGGCATCGGCAAGACGTCTGCAGGGATTTG 879567 30 100.0 37 .............................. GGGGCGGAGGCTGTGTTGGTTGTTCTACTGGCTTTGG 879500 30 100.0 36 .............................. ATAGAAATCCCCATCGGCGAAAGAGTGGCCATCGCG 879434 30 100.0 36 .............................. GCAAACTCCGGGAAGAGTGGCAGGAGGTCAACGACA 879368 30 100.0 36 .............................. TGGTGGAGGCCCAAACTCTGGAAGAACAGCGGCGGG 879302 30 100.0 36 .............................. TACTTTATCCCGGACAGGTCGCCCAGGAGTTCATCA 879236 30 100.0 35 .............................. CCGCAACCCTTGCCCAAAAGCTTCTGCACGGCCGG 879171 30 100.0 38 .............................. TGAATTTTCCACCATGCCTTCACTTTTATCACCTCCTG 879103 30 100.0 38 .............................. GCTTTGGGGCAGGAGCAGTTCGTATTCGGAAAAGGCGA 879035 30 100.0 38 .............................. AAGTTGAAATGCTTCTCATCCGCACAGAACGGGCAGGG 878967 30 100.0 36 .............................. GGTTCTGCTGCCCGGCGGGGAAAGGGCGGTAGATCC 878901 30 100.0 38 .............................. TGATAAATTCTTCACCGGTATCAATGGAAAGCACGCAA 878833 30 100.0 36 .............................. CGATGACATCATGGTTTATTTGAAGGATTTCCATGT 878767 30 100.0 35 .............................. ACATCTGCCGGGGATAGTAATTGCTTACTATTATC 878702 30 100.0 36 .............................. CCGTCGGCATGCCCGCCCGACCCAGAGGCGTCCAGT 878636 30 100.0 36 .............................. CCGGAAGCCGGAACTCACGCACCGGCACTGCCGCGA 878570 30 100.0 38 .............................. GATATTCGCTAAGGCGGAGCCAGCGCAGGAGGTGAGAG 878502 30 100.0 36 .............................. GTGGCAACATAGAATAATCAGCGCCCGGCACCCATG 878436 30 100.0 36 .............................. TAACGTTTATTCCGGGGATTTGTTTTATCATCCTTT 878370 30 100.0 37 .............................. TGGCTATGGCTGTAAGCAGCATAATGCGGCATAATGG 878303 30 100.0 37 .............................. GTTTTTCCTGCATTTCTTTTACAACTTGCTCCACGGG 878236 30 100.0 36 .............................. AGCTTGAGTTAAATGCCAGCCACACTGCGGCTGGCA 878170 30 100.0 36 .............................. ACGGTCCGCAGGCCGTCCCGCGCCCAGTTTTCAAGG 878104 30 100.0 35 .............................. CCGGAAGGAATCTTGATCCGCGGAAAATCCACCGG 878039 30 100.0 36 .............................. TGGCGGATGACTTCTATCGCGCGCAAGGTGTCGTGA 877973 30 100.0 36 .............................. GTAAACAGTTTGCTGATAAACTTGGCGTCAGTCCTT 877907 30 100.0 35 .............................. CGCGAGCCGGGTACGTTGCAGTTCCTGCTCGGCGT 877842 30 100.0 37 .............................. TGGAATAGTGGTAGGTTACTACTAGCCTACCACCCCG 877775 30 100.0 36 .............................. CTCGTAATTCCTAGCTCAAGTAATGCTTGAGCTAGC 877709 30 100.0 38 .............................. ACATCTCCCCCTTGTGTTCCCTTCTGGCTATATCATAG 877641 30 100.0 38 .............................. GTTTCTCAAAGTGATCGAATGATTGATAGGCAAATCCG 877573 30 100.0 36 .............................. TAAGCGATATCCGGATTAACAATAGTCCAGCGCACC 877507 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 74 30 100.0 36 GTTTCCAGCCTACCTATGAGGGATTGAAAC # Left flank : GAAATAAAAACAGTCAAGTTTTTTGAACCAGGTGTCGGAATGTACGTCATCCTTGTATACGATGTAAATGTTGCCCGTGTGGGCAAGGTGCTGAAAATTGCGCGGAAGTACCTGAACTGGGTTCAGAACTCGGTCCTGGAGGGCGAGCTGACCGAAGCAACCTTCCGTGCGTTGAAGGCCGACATGGAGCGAATTATCGATCCGGAAGAGGATTCGCTCCTCTTTTATGTCCTGGGAAACCAGAAATATGCTAAAAGAGAACTGATGGGTATAAAGAAAGGTGGGGAGGAGTGGATCTTTTAGCAGGATTTTTGTCGTCGATGTCCAATAATGCAAAAAGTGCCGGGGAACGACGACAAGCAGGTAAAACTTCGGGGGGATTGATAAGCCGCGCTGGTCGAGGTTCCGGGCCGTTTTGCACCTGGTAAGCAGATTGCCGTATTTACGTTTGTGAAACCGGTCGTAAAAAGTGAGCCTTTATACAATGCGGCCCAAACGGG # Right flank : CTGGGAGGATGTGAACCTAGAGGAAGGTGTCCTGCGCGCTCCTCTTTTATGTCCTGGGAAACCAGAAATATGCTAAAAGAGAACTGATGGGTATAAAGAAAGGTGGGGAGGAGTGGATCTTTTAGCAGGATTTTTGTCGTCGATGTCCAATAATGCAAAAAGTGCCGGGGAACGACGACAAGCAGGTAAAACTTCGGGGGGATTGATAAGCCGCGCTGGTCGAGGTTCCGGGCCGTTTTGCACCTGGTAAGCAGATTGCCGTATTTACGTTTGTGAAACCGGTCGTAAAAAGTGAGCCTTTATACAATGCGGCCCAAACGGGGTTTCCAGCCTACCTATGAGGGATTGAAACAAAGTTCTGGGCGATTATGGATTTACTGATTTATCACAGTTTCCAGCCTACCTATGAGGGATTGAAACTTCGAGGGGATTAATTTGGTATCCCTTAAGGCGGCCGTTTCCAGCCTACCTATGAGGGATTGAAACTTTGTTGCGGGTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAGCCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 335751-341556 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOEF010000003.1 Desulfofundulus sp. TPOSR contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================================================= ================== 335751 30 100.0 37 .............................. TCTATGTCCCCTCGTCGTATCAATTCATACAAATCTC 335818 30 100.0 38 .............................. CCGGCTCATGCAGACAAACTGCGGCGGTGGACCAGCAC 335886 30 100.0 35 .............................. CACATACTCTGCATTTTTTCTCTAAAACCGCTATT 335951 30 100.0 37 .............................. TCAAACACCCGGGATTCACCATTGTCTTTCTCAATGA 336018 30 100.0 36 .............................. TTACAACAGGAAATTGAAGGACATTATCAGCACGGA 336084 30 100.0 36 .............................. TTGACCATGGCTTGTAAATTAGCTTTTGTGTTTACT 336150 30 100.0 37 .............................. CCGTATCTACAAATGGATTCCAGTTTTGCCATGCTCC 336217 30 100.0 37 .............................. TCTTTTCCTTACAGGGGATTCCACCGTGGAGCCCGGC 336284 30 100.0 38 .............................. GAAGCAGGGATAAAATGAACTGGGAAAAAGTTAAAAAC 336352 30 100.0 36 .............................. CACAAACCCAACCGGCAGCAACCCGAACGTGGCCAA 336418 30 100.0 36 .............................. CCCCCTTTCTAAGAGCATCCTCCAGCCGCCGGCACC 336484 30 100.0 37 .............................. CCGGCTCATGCAGACAAACTGCGGCGGTGGACCGGCA 336551 30 100.0 35 .............................. CCTGGGGCAGTATTCGGTGATGACCATACCCATCC 336616 30 100.0 38 .............................. CAATTTCCAGCTGCTGTTGCAGCCTGTGGACCATCAAC 336684 30 100.0 35 .............................. TGTTTTTCCAACGCCGTCCTGGAGCGGCGGGTTAA 336749 30 100.0 36 .............................. AATTCAGTCACGAATTTTGGATTCCCGACGACCCGG 336815 30 100.0 37 .............................. TCCCTTTCCTTTACCTTTTCTTTACTCCACCCTTTGG 336882 30 100.0 36 .............................. TTTTTTCCACCCAGCTGTCAGCCACGTCTTAAACCC 336948 30 100.0 36 .............................. AAAATTCTTCCGCAGTTTTCCGGGTCGTCAAAATAT 337014 30 100.0 37 .............................. AGCCAATGTGAAAATCTATTGCTGCCGGGTCGTCTGG 337081 30 100.0 36 .............................. TGGTCTTAGTAAGCTCTTGAATTTCAAAAGCCATAC 337147 30 100.0 35 .............................. GGAAAAAGTTCCATTAATTACCCCTCCTTATTTAT 337212 30 100.0 36 .............................. CAATAAGGCCATAACCCCCACCAGGGCCACTATGAG 337278 30 100.0 38 .............................. TGCAGGGGAGGGAAGAATGGTAACGGAGCAGGACTTTC 337346 30 100.0 36 .............................. CCGGCACTTCCGGCCAGACCAGGGTCCCTTTGGTAT 337412 30 100.0 37 .............................. CATCAACCTGTTGGGGAGTATAGCTCGCCCCTTTAGG 337479 30 100.0 36 .............................. ACATCCACTGGTCAGCCCCCCTTACAGCAGGTTGAA 337545 30 100.0 37 .............................. CTACTTCAATTACAGGAAACTGCCGGACCTGGTAATT 337612 30 100.0 35 .............................. ATAGAGATAATCTTTCCAGGCAAAGTGCTGACTTA 337677 30 100.0 35 .............................. ACGTCAACTTTCCCGATGTTGTTTGCCCCCGCCGG 337742 30 100.0 38 .............................. ATACTATAGAAACATTTGGGTCACGATGAGAGAAGGAA 337810 30 100.0 38 .............................. CGACCTGGTGGAGACGCGAGGGAAGGAGGTTGCCTGCC 337878 30 100.0 35 .............................. CCGGTCACCGGGTCGTAGCCGGTAATCGCGGCGGT 337943 30 100.0 38 .............................. AGAGGGGGTGTCACACCCCTTCTCCGTCACGGCCTTCA 338011 30 100.0 38 .............................. CATGTAGGTTGTCCAGGGGCCAACCTGGGCTTTGTTTG 338079 30 100.0 37 .............................. CTCATTTAAAAATCCCCCTATCCAAACAGCCAGGACC 338146 30 100.0 36 .............................. AAATAGTGCCATCTTCATACCATACAGAAAAACAAT 338212 30 100.0 37 .............................. CCGGCGCCGCGCTTTGCCGCCGCAGCACCGCGCGCCG 338279 30 100.0 37 .............................. ACTTATATGGACAAATTAACCGTGTTGCAACACGTCC 338346 30 100.0 38 .............................. TTTAAATGCTACCCTTTGCTTAACATTTTGTCTATTCC 338414 30 100.0 38 .............................. CTGGAACATCCTGACGCCTGACTACATCATATCTATAC 338482 30 100.0 36 .............................. CATTTCGTTTCGGGGGCAGCCACTTTTCCCGCTTAC 338548 30 100.0 36 .............................. TAACATGACACCCGACACAAACGCAATACCCTTCAC 338614 30 100.0 38 .............................. AGATAAATCTATGTCTATTTGTGAATTAAAGGGATACC 338682 30 100.0 36 .............................. GTGATGAGATACTTTGGGATTCTAAGGATGATTTGG 338748 30 100.0 36 .............................. ATGCTACGGGCGCCGGCAATGTGACTGCTGTTTATG 338814 30 100.0 35 .............................. ATACCGCCGACAAACAGCCTTTATTTCCGTCACGG 338879 30 100.0 38 .............................. AGGCCTACGGGTGGAGGTGGATGGTGGCGCATGATTAG 338947 30 100.0 37 .............................. CTACAAGTGCCAGCACCCCCTGATCAGGAGGCCCGGC 339014 30 100.0 36 .............................. GGAGCCTGATTGCCGTTTTCTACACCATAGGCGGTA 339080 30 100.0 35 .............................. TTTGAAACAATCCCACCGACCCGCCGTATTTCTCG 339145 30 100.0 36 .............................. TCTGCTCATTATGTGGAAGTCATGAGGGTATATTGA 339211 30 100.0 36 .............................. CATCCACCGAGACATCCCCCACACTGTTGCCAAACC 339277 30 100.0 36 .............................. CTCAATCACTTCCAGAACCATCCCTTCAACCACTGC 339343 30 100.0 36 .............................. ACTGTTGATGAAACGACAAGTTACCCCTTTGAATTG 339409 30 100.0 37 .............................. TCAGGGGGTGTATTGTATATGGCCGATGATAATAACA 339476 30 100.0 35 .............................. ATAATGGATGAAGTAGACACATATATTTTATAACC 339541 30 100.0 37 .............................. TCATAACTCCGTTTCCACTGCCGGAAAACGTCCATCA 339608 30 100.0 35 .............................. CTGGAAGGAATACCGGGCGAAACGGGCGGCTGAAG 339673 30 100.0 36 .............................. ATGCTACGGGCGCCGGCAATGTGACTGCTGTTTATG 339739 30 100.0 36 .............................. ATGGGGAAGCCGTCAAAGTAGGGGATAAGTCAAGCT 339805 30 100.0 36 .............................. AGTCTTCATGACGCATCCTTTCCAGCTCGGCCAGGA 339871 30 100.0 35 .............................. TCCTCTGCCCGCCGGCTTCCTGGCCTTCGTCACCG 339936 30 100.0 37 .............................. CTGGCCAGAAGAGGCCAGCCGGTGGTTGGGGCACGAT 340003 30 100.0 38 .............................. TTCCCTACAATGTGCAGGGCGCGCAGGCGGCATTGCTT 340071 30 100.0 37 .............................. TACGTGAACGCGGATCCCTGCCTGACGTGTGCAAAGC 340138 30 100.0 36 .............................. TAATCATGGCCCAGCTTCTTCAGGAAGCCGACCAGA 340204 30 100.0 35 .............................. CAAGTACTGCTTCCGGCCGGAAGAGGTGTAAATAA 340269 30 100.0 35 .............................. GAATATGAAATAGTCGGCTGGGGCCTGGACCGGGA 340334 30 100.0 37 .............................. AACGAAGAATGGATTTAATCCTCCATCATGTGGGATT 340401 30 100.0 35 .............................. TCCACCACCGCCAGGTTTATCCCCTGGCTGCGCAT 340466 30 100.0 36 .............................. GCAAGGCCTCCTTTCTGCTTGCCGGGATTACGGCTC 340532 30 100.0 36 .............................. ATTTTTCTTCCGGAAAAATCCATGTTATTTCACCCC 340598 30 100.0 36 .............................. CTGCTGGGCTCTCATAAATTCGGTCATGGCCTGGCT 340664 30 100.0 103 .............................. TCCTTTTGGTATAACTTCTCCACATTCACAGCTTGCCGGGGCTGTGTTGGGTGGTTTACTTGGTCTGGCTTTTGGTATAACTTCTCCACATTCACAGCAAATA 340797 30 100.0 35 .............................. ATATTCCTGGATTTTTCCTCTTTCATATTTGACTT 340862 30 100.0 35 .............................. CATATCTCCATATCACGTTGCCAGTCACGCTCAGA 340927 30 100.0 38 .............................. TGGCGGCCAAAATCCGCCAGTTCCAGCAGAGCGGAGAG 340995 30 100.0 36 .............................. ATAGTTGTGCGAGCCGAATTTTATTGAGGACCGAAA 341061 30 100.0 36 .............................. AGATATTTTTGTGCAAAATAATATATTGACATTATC 341127 30 100.0 39 .............................. ATGCTGTATTCATAGTTTAAACAGTTATATTCTTCAAAA 341196 30 100.0 37 .............................. ACATCATAAATGAAAAATAATAAGATATAATCACAAG 341263 30 100.0 36 .............................. CCTTCAGAAGTGGCTTAAAACGGGCATGTCACGTAT 341329 30 100.0 37 .............................. TTGACGATAGCATTGCTAGGCTTTTGGCGAAGGTTAA 341396 30 100.0 35 .............................. ACTGGAGGGGCGCCGATGTGGCTGAGGCCGGAAGA 341461 30 100.0 36 .............................. GAGTACGAAACCGCACAATCGAATCTGACTTGACTA 341527 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================================================================================= ================== 87 30 100.0 37 GTTCGGAGCCTACCTATGAGGGATTGAAAC # Left flank : TTTCGCCCCGAAATGTTTTGGGGCTGAATGGTGCATGGTGTTAGAATGGTGGTGTGCAACATTGTTCATCATTTTAGTCTATGATGTTAACGTGAAGAGAGTAAGCAAGGTCCTTAAAACATGCCGCAAATACTTGCATTGGGTGCAAAACTCTGTTCTGGAAGGAGAAATTTCCGAGGCAAACCTGAAAAAACTGAGAATGGAATTAAGCCGTCTTATCGACAAAGAGGAAGATTCGGTAATCATTTATAACCTGAGAACCACAAAATACTCTACCAGGGAAATTTTGGGTTTAAAAAAGGGGGGAGAAGAACAAATAATTTAGGCATAGCCGGCTCTTTTTTTGTCGTCGACCTTCGTTAGAGTAAAAAAACCTGGGAGGTCGACGACAAATTTTTTCACGGAAAGCCCGGAATACACTTGATCTGAAGCATGAAAGTAGTAAAATAATAGCAAGCGAGGCCAGAAAAAAATTGCCCAATTTTGGTGGCACCCAATTG # Right flank : CAAACTTGTGCCCGTGGTGGTTATGTCAATCAAAAAGTTACCCACCACGGTAATCAAAAAGGGAACCACCCCTGGGCATAAAAATCCTCTTGAACTAATACTGTCTTCTGCTAAATATAGTAATTTTTTTAGGAGCGAATTCACCTCCTATCGTGATTATGTTCGTTAAATCGCCGGCCAGGAACCGGATTTATTCCCGTTCTCGCCCGGGAATCCACGCGAAAGTCAGCTCATTACCCGGTAACGGAAGAAGCATCCTTTGCGCCCTGCCGACTGAGACTTTCCCGGAACCTGTAGCTTTCCCCGTTAAGTACCAGGATGTGTGCCCGGTGGGTCAGCCGGTCGATCAACGCAGCTGTTAGCCGTTCATCGCCAAAAAGCTCCGCCCACTGGCCGAATTCCAGGTTTGTAGTAATGATTATACTGCCCCGTTCGTACCGGGCGGCAAGCACCTGGAATAAAAGCTGGGCGCTTAACTGGTCAAAAGGAACGTAACCTAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGGAGCCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : NA // Array 2 440335-440604 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOEF010000003.1 Desulfofundulus sp. TPOSR contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 440335 37 100.0 40 ..................................... GACGCCTCCCTTACTATTTTCTCCTCGATTCCCCACTTGA 440412 37 100.0 41 ..................................... AGACCTCGCCCATCCAATAGGGTTGCGGGCCCAGTGACCCC 440490 37 100.0 41 ..................................... GCTATTTCCTTCGCCCACTGGAAGTTTCGGTTCTCTTCCCG 440568 37 86.5 0 .............................AC...CCT | ========== ====== ====== ====== ===================================== ========================================= ================== 4 37 96.6 41 GTTGCAGAGTAGCGAAGGCCACTTGAGGCGTTGAAAC # Left flank : GAATCCCCACTACGTCCCCTACTACCAGGGAGCAGGGAATATGCCGCCAGGAGATTACTACAATCCGGTTCCGGTTTTCTTTGGCGCGGTGGAGAAGACACGCCTGGTCCTTTATCTGGGTATGGACGGGGAGATCGGGAAAGAGATGGGGAATGAACCGTTGGAAAAGGCGGTTGAGTGGCTGGGAAGAGCCCTTTCCATTTATGGGCTGGGGGCCAAGACGGCCCTCGGTTACGGCCTGATGTTCCTCAACGATGGAAATTCGTAGCAGTTGGGAAATATGGGATCACGTTGCTCCTCAGGGCAAACCGCTAACCCTGGATCCTCCCGAAAACCCGGGGGGATTAGCGGATCCCCGCAAGCCCAGGCACCAGGCCGGTTTGCGGCCTGCCAGCCGGTTGAAGGGGTGCCTCGGGGGATCCGGGAAAGGGGACCTCCGGCGGGAGGTTAGCGGAAACCGGCCCGCGAGCCCTTGGGGCGCAAGGCTTCCCGGACCCACC # Right flank : TCCATTTTTCCGAAGGTTCTGATTGTATGATGCAGATTTTGTTTCTTTTTCTTACGGACATTGTCAAAATGCTCGTCTTCTTCGTGCTTCGGGTGGCTGAGGCTTTCGCTGGTTGTGCCGTGCGTCTCTTCTACTGGAGCGTGCGCACGTACGGCTGGGGCCGGGTAGCTTGGTTCCTTTCGTCTGCGGGGATCAGTGCCTGGCTTTACTCGCAGCTTTTCGGGCACGTTTCGGGTGGTGTTGTTTTCATTGTGGTAGCTGCGGGTACGGCGGGTATTTACGGTGCTGGTCTGCTGGTTGTCCGGGGCGTCGCCTGCGGGTGGTACAGGAAGTGGCTGGAAAGGTTGAAGCCGCCCGGACAGGAAGGACCGAAAAGTGAGGGAACCATTTTTTCTCCGGCTGTGACGTTACCTTTTCCTGTTCCGGGTGCCTCAACCGGAAGCGGAGCTCACACCGGCTCTCTCTGGGAGCGACTCTTAGCGCCGGAAACCATCCGGCAG # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGAGTAGCGAAGGCCACTTGAGGCGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 3 449820-450171 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOEF010000003.1 Desulfofundulus sp. TPOSR contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 449820 37 100.0 39 ..................................... ACCAGCAAAACAGCCGAAATAATGCCGTCTAAATCACCG 449896 37 100.0 44 ..................................... AGAGAGACACTGAAATTCCGTGACCAAAAGCGGCTGGTAGCAGT 449977 37 100.0 43 ..................................... GTGGGGATCCCCACCTTGTTTTTTTACGTCCTTTATGTTAACC 450057 37 100.0 41 ..................................... ATACCTGTACAAAAGGCTTCATCCGCAATAGCATACAAAGA 450135 36 75.7 0 .....-.G.....................CAGCCT.T | C [450145] ========== ====== ====== ====== ===================================== ============================================ ================== 5 37 95.1 42 GTTGCAGAGTAGTGAAGGCCACTTGAGGCGTTGAAAC # Left flank : CCACGGTGGGCTTTGTCGGCCGCTTTACCTATCGGATGCCGGGCGGCCCGCCGGAACTCACCTGGCTGGTGAGGCTGCTGGCCGAGTACGCCTTCTACGCCGGAGTGGGGTGGCAGACCACGCACGGCCTGGGGCAGGTGCGGCCCCAGTGGAAGAATGTATGACGCGCCCCTGCGGCGGCGGGAGTAGGAGGAGAAGGCGCGGTGCGGAGCGTTGTGGCAGAAAAAAGGAGGGCCCCTGGCAGGAAACCGGCGAGACGTGGCGAATACCTGGGAAAGATGATAACAGAAGGGGCTCTTCCGGGCAAACCGCTAACCACGGATCACCCCGAAAACCCGGTGGGATTAGCGGATCCCCGCAAGCCCAGGCACCAGGCCGGTTTGCGGCCTGCCGGCCGGTTGAAGGGGTGCCTCGGGGGATCTGAGAAAGGGGACCTCCGGCGGGAGGTTAGCGGAAACCGGCCCGCGAGCCCTTGGGGTGCAAGGCTTCCCGGACTCACT # Right flank : TCGGAGAGCATAAACTGCTTTAGCTGTCGTATCTGTCTCTATTTGACAGAAGTTGATACCCAAAAAGTAACAGCGGGCAGTACCGGCATCGGAGTAACACATTGGTGGGGCGGGCGCGCCGGTCAAAACGCGACGCAGTGTACTGGTTAAGAAAATTGCTAAAATAAGGCAAATTGTTGAAAATATTAAAGGAGATTTTTGAATATGACGACCATACTTAGAGAAGAAAAAGTATGCGCTTTATGCGGTAAGATAAGCGAACACAGTGAGATTGGCTCGACAAATGTCTTTGGGTCACCTGATTTGGACACGCGCCCCCCGCAAATGAAACGCTCGACCATCGGCATGTGGATCCAGGTCTGTCCGTTCTGCGGCTATTGTGCCCCGGATATTTCTGGGATAATTGAGAGAGCTGAAGAAATGGTACGAAGTGATTCTTACCAGCAGCAACTAAATGACCCTGAATTTCCACAATTGGCGAATGCCTTTCTTTGTTTTTC # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGAGTAGTGAAGGCCACTTGAGGCGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //