Array 1 51831-58162 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZSN010000003.1 Acinetobacter indicus strain AI2 NODE_3_length_144112_cov_210.147513, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 51831 28 100.0 32 ............................ AAGGTGTTGAATGACTATCGTTGTTCTATCAA 51891 28 100.0 32 ............................ TTAATAAAAAAATAAAATCTACTCCGATGTAT 51951 28 100.0 32 ............................ ATTAAAGCAGTGATTGCAGAAGCGTCAGCAGT 52011 28 100.0 32 ............................ ACTCGGCAACCCACTCAAATAGCAAGTAAACA 52071 28 100.0 32 ............................ TTTCGGAATGAGTTTAACTCTAGTGTAGTGGG 52131 28 100.0 32 ............................ ACAGCAGCAGACACCAGCTGTCGATCCTATCA 52191 28 100.0 32 ............................ ATATCGTTATGTGGTGTCATAGGGGAAAAGCC 52251 28 100.0 33 ............................ AAAAGAAATGATTATTTTATCGGAATGCCTTGT 52312 28 100.0 32 ............................ AGTAGCCAATACGTTGCATGGGCATTTCTCTT 52372 28 100.0 32 ............................ TGTCTGCGACTGCCGTCTGCCTTAAAGTTTTT 52432 28 100.0 32 ............................ TTTTACAGAACCAATAGTAATCCCCTGTCTGC 52492 28 100.0 32 ............................ ATGCCGACAGCTAATAGTGAGATAAACACCAT 52552 28 100.0 32 ............................ ACCAAGATCAATTACAGTTGTATCGTTACCAT 52612 28 100.0 32 ............................ AAACGGCAAAGTATCAGAACATAACGAGATTT 52672 28 100.0 32 ............................ ACTCAATCCAACGATGGATGTGAAGGAGGAAA 52732 28 100.0 32 ............................ AAAGATTTGACTTGATGTGTTCAATTGCACTT 52792 28 100.0 33 ............................ ACTTCCAGTATGTCTGTAGACAGAAAGTTTTTT 52853 28 100.0 32 ............................ TGATACTGACAAGTGCCGCCTGAACGTGTTTT 52913 28 100.0 32 ............................ TGCTTATCATCACAACGAAAACGGTCTTTACC 52973 28 100.0 32 ............................ ATCGCATTTGCAGCCGTTTCATAGATTTCACG 53033 28 100.0 32 ............................ ACCGTGCTCACGCACGAACAAGAAAAATCCCC 53093 28 100.0 32 ............................ TGTGACAATTCAATATTCAGCAAAGCAATTGA 53153 28 100.0 32 ............................ GTGCTGAGTAATTCCATGATGTCGGTTTCCAC 53213 28 100.0 32 ............................ TGAGTCATGTCACGTAGCTCCCGGCAATGAGG 53273 28 100.0 32 ............................ TATTTACTCCAATTATATGATTAAAAATGAAA 53333 28 100.0 32 ............................ TTTACCCTCACCCATTAAAAGGTGCAAATGGT 53393 28 100.0 32 ............................ ATATATCCCCCTCTTGATCTGCAATAAAAAAG 53453 28 100.0 32 ............................ TCTTTTTCACCACGGCTAGTAAATAACAGGCA 53513 28 100.0 32 ............................ TCAGATTAAGAGAGTTTGGTGCGAAACTTATC 53573 28 100.0 32 ............................ TATGAATTTCTTAACTCGCTTAATACCGGTCA 53633 28 100.0 32 ............................ AATTAGTTTGACCGCCCAAAATGATGCTAGTG 53693 28 100.0 32 ............................ CATGCGGTTAGCCATATTTAAAGCGATAATGC 53753 28 100.0 32 ............................ TTTGATTTCTCCACGCGAATTAACTTGAATTT 53813 28 100.0 32 ............................ ATGTACATCAAGTATCTCAGAAGCCAGGTACG 53873 28 100.0 32 ............................ TTATTGAACGTCAGGCTCAGTAGTTCGCGCTA 53933 28 100.0 32 ............................ ATCTTGCTTAATCCAAGACTGATCTTGTTTTT 53993 28 100.0 32 ............................ TGCGTATTTGTATTTTTGAAAATAAGCACCTG 54053 28 100.0 32 ............................ ATTCATAAAGACATTCGATTGATCCTGGAGCA 54113 28 100.0 32 ............................ GCACGATGCGCCTTTCGATGCGTCGGTTTTGT 54173 28 100.0 32 ............................ TGCTCCAATTCATCATATGTAGAGTCATCATC 54233 28 100.0 32 ............................ TTGCCGAATCCAACATGAGATGTGATGTTAAA 54293 28 100.0 32 ............................ TGTATGCGTCTTTCTCCTGATCGTATCTTGTT 54353 28 100.0 32 ............................ TTGAAAACAATCACATCATATCTACAGTGTTT 54413 28 100.0 32 ............................ TGACATTCTGGTGGCTGGTACAGACACTTCAG 54473 28 100.0 32 ............................ TAAGTAAAGGTTGTGTGTTGCAAGGGAACTAC 54533 28 100.0 32 ............................ TGTTAATTCGATGAATCGTTCTACATGTTTAT 54593 28 100.0 32 ............................ TCAAATACATCAAATCATCAGGTGTATGCAGA 54653 28 100.0 32 ............................ ATCAGAAAAAGGCGGGAAGCTGATTATTCAAG 54713 28 100.0 32 ............................ GAGATCGTTTTGAGAACACTTATAAGGCTGTT 54773 28 100.0 32 ............................ TATGCAAAGTTACCAATCTGGATCGAACCAAA 54833 28 100.0 32 ............................ TGAACGCAGTTGATAAGGCCATTTGTGAATAC 54893 28 100.0 32 ............................ CAAAACTTCTCAAAGTCTTCTGGGTACACCCC 54953 28 100.0 32 ............................ TGACCATAGAAGCCCGCGCCAAATAGATTATG 55013 28 100.0 32 ............................ TTCAAATTCAGTTTTAGACACTAAATTTCTGA 55073 28 100.0 32 ............................ TCTGATTGCAGCTTTGGATGCAATAAAACGAT 55133 28 100.0 32 ............................ TGTGTATTTCATACTTTCAGGAGTGTTGGTTC 55193 28 100.0 32 ............................ TTTTATTGGACATTCAGGTGATATAGAATGAA 55253 28 100.0 32 ............................ TTTTGCAACTGGCAACTTCCCATCAGGAAAAT 55313 28 100.0 32 ............................ ACAAGAATATCCCCAAGAATGGATAAGCCGCC 55373 28 100.0 32 ............................ AAGAGATCGGCGGCGCAACAGTGAAAGAGTTA 55433 28 100.0 32 ............................ GCAAAAAGGGCGGTGGCTATGTGTTCCAGACA 55493 28 100.0 32 ............................ ATGGTCTCACATAAAACGATCTATAACGCCAA 55553 28 100.0 32 ............................ GGTAGGCAGTTTACATGTGTATCAAGGTGATG 55613 28 100.0 32 ............................ AACATTTGGAATTACATCATTAAGAAAAACTT 55673 28 100.0 32 ............................ CATCCAAGAACCAATGTACGTGAATGGCCACC 55733 28 100.0 32 ............................ AGCAGGTGAACGCTCAACTTTAATCACAAGCA 55793 28 100.0 32 ............................ AAGCAGGATGCGAGCACCATGGCGGATTGACT 55853 28 100.0 32 ............................ ACCCCATCGATCTCAGTATCTAGTCTAGCAGA 55913 28 100.0 32 ............................ GCAATTTCTTTGGGTCTACCAAGCCAAATATG 55973 28 100.0 32 ............................ AAGCACTTGAGGCGGCATAGTGGATTTAATGC 56033 28 100.0 32 ............................ ATACCCACGAAAAACGCAGTGTCATCCGTCAT 56093 28 100.0 32 ............................ CAGATGATCTTAAATATCTGTTAAATTAGAAA 56153 28 100.0 33 ............................ ACCACCAACCCCGGTCTTTAATGAGATCGGGGT 56214 28 100.0 32 ............................ CCATAAAAAAAGCCCGCTCTGGGTGTTTAATT 56274 28 100.0 32 ............................ ATTAATTCGTCGTGTAATCGCTCTTAAATCAT 56334 28 100.0 32 ............................ TAAATCTCTCTAATCTCTAAACCGTGTACTGA 56394 28 100.0 32 ............................ TTCTTCGACTTGCACAAAGGGCTTCTCAGACG 56454 28 100.0 32 ............................ ATAAAAATATAAACTACTGATTCTAAAGTGGA 56514 28 100.0 32 ............................ ATTATATGGAAGAAATCGCATCTGGTGCAGCT 56574 28 100.0 32 ............................ GGCCAAAGCTAATGGTTTTATCCAGGTCATAA 56634 28 100.0 32 ............................ AAGTATATTGCCAGCGATTTTAAAAATGGCAT 56694 28 100.0 32 ............................ GGCAAGCCCGTACAAGAAAAACAGGGCATACA 56754 28 100.0 32 ............................ TGACAGCTTCGCATATCCGAAGCGGTTAGATC 56814 28 100.0 32 ............................ AGCGAACTGCCATCCAGTAACAGTGGCCGGGT 56874 28 100.0 32 ............................ TAAATAGCAAATGCTTTGAATATCATTCCGAA 56934 28 100.0 32 ............................ TTTGGCTCACCGCCATCATAGGCGACTTCTCG 56994 28 100.0 32 ............................ ATTTGGAGACCGTGCCTTTACTAAGGCCTGTA 57054 28 100.0 32 ............................ ATTTTCATACACTGGCTGCCCTTCACCATCCA 57114 28 100.0 32 ............................ TCTTGATCTCCTAGAAGACAAGACAGCATATA 57174 28 100.0 32 ............................ ATAATCACGCGCAGGTTGTTGTCGATAGGCCT 57234 28 100.0 33 ............................ CACCCCACCCTGCAACTTTGCCATTCACATCGA 57295 28 100.0 32 ............................ AAACCGCCAATGACCCGGGCCAAACGGGAAAT 57355 28 100.0 32 ............................ TGCAACTGGTACGTGATCCAACCAAGAAAGAC 57415 28 100.0 32 ............................ AGATCGGCTTCTTTGATTTTGCCGTTTACTGC 57475 28 100.0 32 ............................ ACTGTTGCTGAATCTAGGAAAAATACTTCTAA 57535 28 100.0 32 ............................ AGTCAAAAGGCGCAGGTACGCTAAACTTGTCC 57595 28 100.0 32 ............................ AGACGTTTGCGTAGTCATACCCACTGTTGCTG 57655 28 100.0 32 ............................ CTAAAACCATGGAAGCCGTGAATGCTCATGAT 57715 28 100.0 32 ............................ TATGCTATGAAAGAGCTATTCCTGATTGATTC 57775 28 100.0 32 ............................ TAATAACCTCAATTTCTTTATCTAATGACATT 57835 28 100.0 32 ............................ AAACACATGCAGAAATAACAACACCCGCAAAA 57895 28 100.0 32 ............................ GCGCAGGCGATCGACTGGTTGTAAACGGTGAA 57955 28 100.0 32 ............................ TGCTCGAACACCTCGCCGATTAGCTGAGATTC 58015 28 100.0 32 ............................ TCCTGAATACTCAGCAGACGAAAAACATCAAA 58075 28 100.0 32 ............................ TGGGTGCTTTTTTATTGCCAGATCAAGAGGGG 58135 28 92.9 0 ............G...........A... | ========== ====== ====== ====== ============================ ================================= ================== 106 28 99.9 32 GTTCACTGCCATATAGGCAGCTTAGAAA # Left flank : AAAAATGGCTCAGCCAATATTTGGATTATGTGCATATTAGTTCTGTTAAAACTGTGCCATTAGATAAATTAACCGGTTATGCAGTTTATAAACGTAAGCAAGTGAAAAGTAGTGCGGAAAGACTCGCTCGGGCGGAAGCTCAAAAAGGCCGTTATGATTACGAAAATGCGTTGGCACATTATCGGAAGTTTATTAAAACAACGAACTTACCATTTATTAATATGCTGAGTGATAGTAGTCAGAATACAGAGTTTATTCAGAAGCATGCATTTAAGTTATTTATTGAAAAACTTCCCGCTGAAAAATCTGAAACTCAGGTTTTTAGCACCTATGGTTTAAGTTCGGAAAGTGCTGTACCTGAATTTTAACCCAATATTTTTTTGATTCTTTAACAGATTAATAAAATCAATGAGTTATGATAGTGAGTTAAAACTTGGGTCTTTTATGGGTTTTGGGCTTTAACTTACTGTTATAACTTTATTTTTTGTTTTAAAATTACT # Right flank : ACACCCAAAATAAAACCGGAGCATCGCCCCGGTTTTATTCTTCATCTATTTATTCTTCTAACAGGCTTCTTAACATCCAGGCAGTTTTTTCATGGACTTCCAATCGTTGGGTCAGTACATCCGCAGTTGGCTGGTCATTGGCTTCTTCCACCACATCAAAAATACTGCGTGCGGTACGGGCAACTGTTTCATGGGCACGAACCAATAACTCCACCATTTCATTGGCTTTTGGTACACCTTCGACTTCTTCAATCGACGCCAGTTTTACAAATTCTTTATAGGTTCCCGGCGCCGGAAAACCCAGCGCACGAATCCGCTCGGCAATAACATCCAGTGCATTCCATTGCTCGGTATATTGCGTCATAAACATGGTGTGCAGGCTGTTAAACTGTGGCCCGGTCACGTTCCAGTGGAAATTATGGGTCATTAAATATAGGGTATAACTGTCGGCCAGAAGTCGGGAAAGCCCTTCGACAATTTTGGCCCGGTTATCTTCAGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //