Array 1 589745-590688 **** Predicted by CRISPRDetect 2.4 *** >NZ_VRVT01000001.1 Escherichia coli strain CD69_1 NODE_1_length_711822_cov_30.224654, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 589745 29 100.0 32 ............................. GGGACCGCCGTAGATGAAATTAAATCATTCAG 589806 29 100.0 32 ............................. CCCTTCTCTGACAGGTTTGCGGGCCTGTACCC 589867 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 589928 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 589989 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 590050 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 590111 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 590172 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 590233 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 590294 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 590355 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 590416 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 590477 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 590538 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 590599 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 590660 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 616388-617636 **** Predicted by CRISPRDetect 2.4 *** >NZ_VRVT01000001.1 Escherichia coli strain CD69_1 NODE_1_length_711822_cov_30.224654, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 616388 29 100.0 32 ............................. ACATACTTTGCAGGCGATCGGCAGCTCTGGAA 616449 29 100.0 32 ............................. TTCAGGAAACCGGCGACAGCTCAGCTGATAAT 616510 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 616571 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 616632 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 616693 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 616754 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 616815 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 616876 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 616937 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 616998 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 617059 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 617120 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 617181 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 617242 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 617303 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 617364 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 617425 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 617486 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 617547 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 617608 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //