Array 1 2479995-2473282 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023418.1 Vescimonas coprocola strain MM50 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 2479994 33 100.0 38 ................................. ACGTCGACGGCCTCGGAGGCCAGCGCCATTTCCTGCGC 2479923 33 100.0 35 ................................. CCGACACACCATTGACCGACCGGCAGCTGCAATAC 2479855 33 100.0 36 ................................. TCCAACTTATCGGACATATTCCCCGCCACCATGCCG 2479786 33 100.0 35 ................................. CCAGCTGGGAAGCATGGATTTAGACCACAAGCCAA 2479718 33 100.0 34 ................................. GTACGACAGATTGTGTACCAGAACGACCAAAGAC 2479651 33 100.0 33 ................................. GGGATCCAGACTGATGCGACCCCACGGTCTGCA 2479585 33 100.0 34 ................................. CCAGCTGGGAAGCATGGATTTAGACCACAAGCCA 2479518 33 100.0 33 ................................. GATTTTTATTTGGAGCAAATCGACATCACTGAC 2479452 33 100.0 36 ................................. CCAGCTGGGAACGCCAGTATCGTGCCATCACGGCGG 2479383 33 100.0 33 ................................. CTTCGAGGCGGCGCGGCGCAGCGCATCGACTGT 2479317 33 100.0 33 ................................. GTTGTGCCATGCTGCATAGCAATATGTCGTTAA 2479251 33 100.0 36 ................................. CCAGCTGGGAACGCCAGTATCGTGCCATCACGGCGG 2479182 33 100.0 33 ................................. CTTCGAGGCGGCGCGGCGCAGCGCATCGACTGT 2479116 33 100.0 33 ................................. GTTGTGCCATGCTGCATAGCAATATGTCGTTAA 2479050 33 100.0 33 ................................. GCTGATGTTTCAGCCATTAGAACAGCTTATGGG 2478984 33 100.0 36 ................................. ACGAGGACGGGGGGCGCACATATTGCGCACTTTACA 2478915 33 100.0 37 ................................. GTATCAAATTCTGCCTCGATCTTGCGCAAATCGGAAA 2478845 33 100.0 37 ................................. CATCTATGGTTGTGGTATTCCGAGGAGGTGCCCTACA 2478775 33 100.0 35 ................................. ACATTGATCACAAGCGGGGAATTTGTATGATCATT 2478707 33 100.0 34 ................................. ACTCTGTTGGTGTATTAAGGAGGTAACACAATGG 2478640 33 100.0 34 ................................. CCCCATAAGCAGTTCTAATGGCTGAAACATCAGC 2478573 33 100.0 33 ................................. CGTGTGTTGGGAGGCATTCCAGCAAAATGTCGG 2478507 33 100.0 37 ................................. TCCAAACGTCCCTATTGGCGTGGGAGCCCCCGGCGCC 2478437 33 100.0 35 ................................. CCAGCTTGGCAGCATAGATTTAGACCACAAGCCAA G [2478417] 2478368 33 100.0 33 ................................. AGCCGGACGAGGTTTTTGCCGTGGAATCCCGGC 2478302 33 100.0 37 ................................. TACCGTTAGGTTTGAGCGAGGAGTTGTTAGGAGCAAT 2478232 33 100.0 34 ................................. GCTCATAGCGTCCTCCGTTTTCGATAGTGGGGCG 2478165 33 100.0 37 ................................. CCCGGATGCAGTGGATCAGACCATGATGTGTCTGGAG 2478095 33 100.0 34 ................................. TCCAGCCTGACCACCCCTATCTGGACCGGCTCCA 2478028 32 97.0 35 ...................-............. ATTGGTAGTAGATTGGTAGTATCGCATCTACCGAA 2477961 33 100.0 36 ................................. CCAGTCGCCGGTAAATACCCCTTTGACAAACTGGAT 2477892 33 100.0 34 ................................. AGCTTAGGCCGACCAGCCTCCTGCGTGATGCGGC 2477825 33 100.0 34 ................................. CGCATGACCCGTGGGGCGAGCATGACACCAACAA C [2477815] 2477757 33 100.0 33 ................................. AGTCCCAGCTGGAGACAGTCCCCGGCGGCACCT 2477691 33 100.0 34 ................................. TCCGATCTCCACCAGCCGTCCTCCGTGACCCTGA 2477624 33 100.0 34 ................................. TGCTTTTCACCATCCACAAAACGCCCCCCTTTTG 2477557 33 100.0 36 ................................. TTCTCAGCGCAGAGGACCACCTGTTGCAGCGAAACG 2477488 33 100.0 33 ................................. TCCTGTATCTATACCACACATGGCGCAGTCAGC G,C [2477467,2477478] 2477420 33 100.0 33 ................................. AGCAGAGCACAAACCGTCATAAGCAGCGACAGA 2477354 33 100.0 33 ................................. TGTCCGATTTGCGCAAGATCGAGGCGGAATTTG 2477288 33 100.0 33 ................................. TCCGCATCAGTAAACGCAACGGCCAAAACAGCA 2477222 33 100.0 34 ................................. ACATTTACGTTTACTGTGTGATACAATAACCGTA 2477155 33 100.0 35 ................................. CTCTCTGCCCTCCACACAGTCATCCAAATAAAGGA 2477087 33 100.0 34 ................................. GCTTATTTGGCGGAATTGACATCAGTAGATATGC 2477020 33 100.0 34 ................................. ACTGCCGTCTCCTTTCTTTTTTACCCCCCAGTAT 2476953 33 100.0 35 ................................. ATAATGACGCAGCATTTAGCAGACACAGGGAAAGG 2476885 33 100.0 33 ................................. AAAGGCATCGGTTGCCACAACCCGAACTTCGTA 2476819 33 100.0 33 ................................. ACAAGGCGGGGGAAATCCTTGTCTTGGGCCTGC 2476753 33 100.0 36 ................................. CGGGGTGGGGACACCCATTGCAACCGCCATTTTGCC C [2476743] 2476683 33 100.0 39 ................................. TATTTCGCCCAGTCCACATCACCAATGTATTTGACGGAG 2476611 33 100.0 35 ................................. CATGGCTTCCATGCGTCATCATCCAGCATCCGAAT 2476543 33 97.0 34 ..............A.................. GATAGGGTCGTACTCCGCAGTGATGGCCCGATAC 2476476 33 100.0 34 ................................. ACGACGTCCCCGAGACGGCCCGCTGGATCATCAC 2476409 33 100.0 35 ................................. CCGAGAGAAAACAGCGACAGCCCTGTATAGACTTG 2476341 33 100.0 35 ................................. AAATCACTGTTGGCCGCATATCCTAAAACGCCCAG 2476273 33 100.0 36 ................................. AAAAATGTAACGCTGGCCCTTTAGTTCACGGGCAAA 2476204 33 100.0 37 ................................. ACCAAGATGAAGGTGGCGCCTGTTGCCTATGGCGACA 2476134 33 97.0 34 .G............................... AATACCTCACTCCGATGTAGTCCAATACCCTGAC 2476067 33 100.0 33 ................................. ACACTAATGCCTTTAATGGCAGTGTCACAGGAA 2476001 33 100.0 34 ................................. ATAATAGCTAAGACTGTCATCATAGACAAGAGGA 2475934 33 100.0 36 ................................. TGACTGGTCGTAATAATTCTGATTTGGTGCAATGCA C [2475924] 2475864 33 100.0 35 ................................. GTCAAGTTCCTTTTGGTATCCGTTTACTGCATAAG 2475796 33 100.0 34 ................................. CGGTAGTAACTAAGGACATTGACATTCCAAAGGT 2475729 33 100.0 33 ................................. AATGTACCGATTGCCCATCAAAGCCCACTTGGC 2475663 33 100.0 33 ................................. GTTTGATTTTTGTTTTTGGTAAAAAGGGAAGTG 2475597 33 100.0 33 ................................. TTCCCCAAGGGGACCAACTTTGACCAGATCACA 2475531 33 100.0 34 ................................. CATCGTGGATCAAGTGAGCGTGGCCGATCTCTCC 2475464 33 100.0 33 ................................. GCACTTAAATTGGAAATGTCTGCGTCTATCAAA 2475398 33 100.0 33 ................................. CGCAAGCCTGGTGACAATCCGGAGCGCGTCAGC 2475332 33 100.0 35 ................................. TTCGGCCCGGCCGTCTTGCCATGACCGCTTTTGCC 2475264 33 100.0 36 ................................. TTGTGCTAAGATGTTAAAAAAGGAGGGACGGCATGA 2475195 33 100.0 34 ................................. ACCGCATTGCCCCGGATATGGACTACGTCTGTCA 2475128 33 100.0 34 ................................. TCCGTGGCCAGAATTTTGCAGGTAGGGAGCGATA G [2475108] 2475060 33 100.0 33 ................................. CTGAAAATCATGGTTGCGGGGGAAGGAATCGAA 2474994 33 100.0 33 ................................. TTCGATGTGAAGGACAACCAATCATATAAGACA 2474928 33 100.0 33 ................................. CTACAAAGACTACTCTGGCTCCGGGGCCCCGGA 2474862 33 100.0 36 ................................. GCATATATGGTGGAGCAGTTGGCAAAACGGCTTGGC 2474793 33 100.0 34 ................................. AAAAGTGGATGGCGACCGGCTGTAATGCCTTTGA 2474726 33 100.0 34 ................................. ATCGGTGGCTCTCCCGGTACTGGGAAAACGCACC 2474659 33 100.0 35 ................................. GTCTCCAACAAAAGCAAGTTTGCAAAAAACCTGTC 2474591 33 100.0 33 ................................. AAGTTACACGCCATATCGGCTACGCCTTTAGTA 2474525 33 100.0 34 ................................. TCCGACACAGCAAGCCGTGAGACAATCTCACAGC 2474458 33 100.0 34 ................................. GGTTTAACGTGCGTGACAGTGACACGAATAAGCA 2474391 33 100.0 34 ................................. TGCGGCACTTGTCAACCCCTTTTGTGTTGCCCCT 2474324 33 100.0 35 ................................. ATCACGCCGGGCGGCTCTCCCGCATCGGCTACGCC 2474256 33 100.0 34 ................................. TCCTTGTAATTGTATTTTGGATTTCTCCGACACG 2474189 33 100.0 35 ................................. ATGCTGATAACCCTGAAAAACATCAGTATGATGTA 2474121 33 100.0 32 ................................. ATCAGCAAGCGCATTTTTAAGGAGATCATAGA 2474056 33 100.0 35 ................................. TTGCCCGGTTAGGAAGGAGCGTGCCACACCGATAT 2473988 33 100.0 34 ................................. CTTTCTGATCTATAATATGTGCATTTTGGAGGTG 2473921 32 97.0 34 ...................-............. TCAGCTGTTGCGTGAAAATTCTATGTATAAAAAT 2473855 33 100.0 34 ................................. TTTTGATGATTCCATCTGCTTTTGCTATGCTAAC 2473788 33 97.0 35 ...........T..................... TATGCCTTTCCGTGGGAAAAATATTGGTGGTGGTA 2473720 32 97.0 35 ...................-............. ACCAGCGTTTGGGACGGAATGAAGGGTGCATTTAA 2473653 33 97.0 35 ..............A.................. CTCAGCGCTCACATGGCCACCTCCTCCGCCTCGGT 2473585 33 97.0 36 ..............A.................. CTGTGTTACCATGGAATGACTGGCGATAGCGTGCTA 2473516 33 100.0 35 ................................. AATCGGAGATTTTGCGTTTCTCAATTGTTACCAAC 2473448 33 100.0 33 ................................. CATAATTTCTCCTTTCCGTGCCCGATTCGGGCA 2473382 33 100.0 35 ................................. CTCAGCGCTCACATGACCACCTCCTCCGCCTCGGT 2473314 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ======================================= ================== 100 33 99.8 34 GTCGCCCCCCTCGCGGGGGGCGTGGATTGAAAT # Left flank : TGTAAACACCGAGGACGCCGCCGGGCGCAAGCGCCTGCGGCAGATCGCTAAAAAGTGCGTGGACTACGGACAGCGGGTGCAAAATTCCGTGTTTGAGTGCCTGCTGGACGCAGGGCAGTGCCGCCGCCTGCAGGCGCAGCTCCCGTCCATCATGGATTCTGAGAAAGACAGTCTGCGCTTTTACTATCTAGGGAAGCAATATGAGAAAAAAGTGGAGCATTTCGGTACGAAGAGCACCTATCTGCCGGAGGATCCCCTGATCCTCTGACACACGCCGCCCGGCGCGGCAGTGGTACGGCGCACGGGTATCCGGGACGCGCCTTCCCGCCCCCTGCGAAGTCCAAGTGACCAGATATTTCCGGGAGGTTCGCAAGGCTTTTCCCGAGAAAACGCCGGTCTTTCTCCGGGTTTCTCAGGCAACCACCCCGTATTTTTCCCAAAAAACGCAAAAGTTCTACTTGTTTGTCAAAGATCCGCAGGTAAAACTGTGCATCTTTGCT # Right flank : GGTGCTGTCCATCTCAAATGGCATGCTGTTCTCCTTTCTCGTTCATCGTATCGTTTCTTTTCCCGTTATACATCTCGCGGAGCAAAAATCGCCCCATTATACCGCTTCATTCTACGCAGCGGGCTCGCCCTCCCCGCCGCGCTCCTGAAGCATCAGGAACATCGCCGTCGCTCCGCTTCCTCCAGCTTGCGCAAGATCTTCTGGCGCATCGCCTCCTCTGGATCCTCCGGCGGGAAATTCTCGATCTCCGCTGCGTCATACCTTGAAGCCGCCTCGCAGGTCACCGCAGGGTTTCTCTTTACAGTGGCGCTACGAATGGCTTGGATCTCGGAATAGAGCAGGGTCTTCTTCATGACCAGCGCCTCTGTGATCTCTTTCAGAAACGCCTCGTTTTGAGCAAGGAGCGCCCTTGCCTTGCCGTAGTACCGCTCCAGCTCCGCCTGTACCGCCGCCTCGCTGCGGGCATTCAGGCTTTCGGACATGTTGCTAGAGGAATCGCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCTCGCGGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.60,-10.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //