Array 1 662-102 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOCQ01000005.1 Lihuaxuella thermophila strain DSM 46701, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 661 30 100.0 37 .............................. AGTTGGTTTCCGACGCGCTCCGTCACTATGTCGCGTC 594 30 100.0 37 .............................. CTGTGATATCCCTTAGCTGGGCTCTGGTTTGATTTGG 527 30 100.0 35 .............................. TATGCCGGAGATGAGCCAAGTAAGGCGCTTTATGG 462 30 100.0 36 .............................. CGGATCAGCCGATCTTTCTTCCCGAAATACACTCCA 396 30 100.0 36 .............................. TAAGGTCAAAAAACCAGTCGACGGTTCGTCTATTAC 330 30 100.0 36 .............................. ACAGGGATAAGCATTCACTCTGACGATCCGGATGAG 264 30 100.0 36 .............................. TGGTTGAATGATACGCCACTCCATTTGCAAGTTCTG 198 30 100.0 37 .............................. GTCCATCAACAAACTTGATCTATACGTTTCATCCATC 131 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 100.0 36 CTTTAGTTGTAACCATAATGGGATTGAAAG # Left flank : ACCGAACTCTGGGCAGAAATGTCAGCTACCAAAGGCTAATTCGGCTTGAATGCTATAAGCTGATCAAACACTTACTTGGCGAAAAAACTTATTCGAGTTTCAAGATCTGGTGGTGAGATTCAATATGTATGTGGTAGGAGTATATGACATCAATGTAAAGCGTGTGGCTAAGGTAAAAAAAATCTTTCAACGCTATATGTTCTGGATGCAAAACTCCACATTCGAAGGCAGCCTGACCCAAGCCCAACTGCGGGAATTAAAAAATGCATTAAAACTTGTTACAAATCCGAAAGAGGACCATATCATCTTTTATATAATTAGAAATGAGGATGTAGTGAAAAAAGAAGTCATTGGTGATCACCATCAAGATCCAAGTAATATTCTTTAGCTTGATAAAATGTCTGTGAACCTCCCGGGGATTTTGCAGGATAAGGGGTTTACAGACATTTTTGCATGTAGGTATAATTGAAATGCTTGAATCTTCTGTAGTTCACACACGG # Right flank : GTTGGGTCTTAATGCCCCCCATAAGTCCAGACAATTATGCAACTTTTTGAGTTAGCATTTGTCTAAATTCTCTTGGAGACCTGTAATTCAAAGCGGAGTGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAGTTGTAACCATAATGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 2 9591-9889 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOCQ01000005.1 Lihuaxuella thermophila strain DSM 46701, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 9591 30 100.0 40 .............................. GGCCATCTGTGCTGTCTTCTATATCGGTCCAACCTTGCGG 9661 30 100.0 35 .............................. ATAGCCGCCCCAAGCCCAAGTACACCAGCGGTAAC 9726 30 100.0 36 .............................. GGCAACCTCTCCGGAGTGGCGATGAAATTCAAGTTG 9792 30 100.0 38 .............................. GGTAGCTGTCCATACCATTTTTACTGCCTAGCTTGATC 9860 30 96.7 0 A............................. | ========== ====== ====== ====== ============================== ======================================== ================== 5 30 99.3 38 GGTTAATTGAATCCATAATGGTATTGAAAG # Left flank : GATAGATAAAGCTGCTTATTGAGTAATTGAGGTCATAGGGCAACAGAACTTCCTCATCTATATGAAACTTCAATTCGGCTCGCATGATCGCAACATCACCTATTTCACTCCTATAGAAAATTAATTTTTAAACAGATGATGTCAATATAATAAATATTTTGTTATTTGGCAAATGTGCTATTATTATCCTGTGGTCCGATTTTTTCTTTTTTTATGTGTTTATTTGATTTTACTTCAAATACATACTATATTTAAAAGTAGACGAGTTAACCTATTTTTTATTACAATAAACTATTTGCTTTGAAATCCATTCTGGAATTGAAATATAGACAATTAATTTTTGATCTAGTTGAATCCATAATGGATTTGGTATTCAATTTCCTTCAACTGATTAAAATGTCTGTGAACCCTCCCAATGTTTTTGCAAGATCAGAGGTTCACAGATTTTTTTCGCTTTTGATGTAATGAAATTGTTTGATATTTGTGATGTTCACACACTG # Right flank : GCTCGTTTCGCTTCTTCTAGACTAGCCATAGAGAAACCCCAACATCAAAGCGGTGTTGGGGGTTTTAAGTGGCCTCCTTCGGTTACCCGAATTTTTTTAAAAATACAGACGGAAAATGGTTATGGCCAACGAATAAATAATTAATCAAGACCACAAGGGGGATTTACATGAGTGAATCAAAATCAAATGAAATTTTGCAACAGTTGGGGATGATTTACCAAAAGATAGGATGGAAAAAACTGTTGCTCTGGTTGTTATTTATCATCACCGGCTTTTGGTCTAAAGGAGCCATTTTCATCCTTGGTTCAATTGGATTCTTAATTTACGCAATCATACGTGTTTCCGATAAAGAAACACGAAAGAAAGGTTTGATCATGCTTGGGGTCAGTGGAGGTTCTTTCTTTTTAGGATTGATTGTGCTAATTGTTTGGGGCGTGTCCTCAGCTCTAACGGATCCACCAGCTGCCTCACCAAAAGCTGATACTCCAGTTGCTGCACAA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTAATTGAATCCATAATGGTATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 89385-89748 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOCQ01000010.1 Lihuaxuella thermophila strain DSM 46701, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 89385 30 100.0 36 .............................. GGCAAGGAAACGCGGATCCGAAGAAGACATTATCTG 89451 30 100.0 40 .............................. TGTGATCACCTCAATCTATATAAACAGACTTGCTGTTAAA 89521 30 100.0 39 .............................. CAAAACTAACAGAAAAAGGCCGGGAATTAATTAGAGAGG 89590 30 100.0 36 .............................. ACTCTTAACAGAAATTTTTGCATCCCCCTGAGTTAT 89656 30 100.0 35 .............................. TACACAACGCCGATCTTATCCGTCCAGTAGGCTTT 89721 28 93.3 0 ....................--........ | ========== ====== ====== ====== ============================== ======================================== ================== 6 30 98.9 37 GTTTAGTTGTATCCATATTGGTATTGAAAC # Left flank : ATATGTAAATATAATAAATAGTATTTTATTTTTTAAACAATTAAGCTACTTCCCGACCATACTTGCACAAAAATATGCATTTTGTGAAGTTTGCCTGAACTGGACATGGAGAAAAGATGTCCGGCTGGTTGTCGAAGACCCTGGTGACACCATCGGCAAACGAGTATGCATGGACTGCATTCAAAAGCATCAGATCCAAGTTCCCGACTGTGAATGGTCTTTGGCGTACGATTGCCATTGAGCGGATTCACGGGCGGTAGACTGGCTGGATGAAGATTGAGATAAAATGAAGCATTTGGGGACTGGCTATATTCTTCAAGCGATTGACAACTGTAATGAATAGAAGATGGTTTGGCTGTTACGGTTGGTAGGAAATGATGCAATAAGACTCGCTACAAAGTCTGTGAACCTCCCGGGGATTTTGCAAGATCGGAGGTTCACAGATTTTTTATGCTTTTGATATAATGGAATTGTTTGATATTTGTGGTGTTCACATACGG # Right flank : CTTAGGGAAGATTGGTTTACAGGGCGCGGTTGACAGGGCGAAACGCTTTTCATAGCCCGCTAATCAATCGATCGTGAATGAAAAAGAATGACACAAAAACCAAGGCAGGTGGCTCATTCCACCTGCCTTGGTTCGTTTAGGCATCGGCCAGTTCCGCCCACTGGTCGGTTTTTTCAGCGAGGGTTTGTTCCAGCTTTTCCAGCTCCTTTTGCAAGTCGGCGCTCTTCAGGGGCCGAGAAGATTTCGGGATGGAACAATTCCTGTGAATGCGGGCGATGTCTGTTTCCAGCTTTTCAAAATCCTTTACCGAAGAAACGTAGCTTGTGCCAATTATACCGAATAAGGGGAATTTACTCAAAATCTATTCCGGGGTGTAATAGTTAAGGTGGGACGGGAATCAGGTAACTCCGAGATACATGCAAGAGTACATCTGGATCCGTCTTGCCTTGTGGAAGGGGTGCAACGGATGGGGCTCGGTGATTGATTGACGATTCCACCGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGTTGTATCCATATTGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 2 94706-94865 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOCQ01000010.1 Lihuaxuella thermophila strain DSM 46701, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 94706 30 100.0 35 .............................. GACAACAAACCGGATCGCCAGCTATAAGTATAGGT 94771 30 100.0 35 .............................. TTCACTTGGATTTCCCGACGGGAAAAAACAACTGA 94836 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =================================== ================== 3 30 100.0 36 GTTTAGTTGTATCCATATTGGTATTGAAAC # Left flank : GACCATCATGAACCATCCCCAACCCTGGCCTTACCGAAAACTACGCATTTTGTGAAGTTTGCATGAAACTGGACATGGAGAAAAGATGTCCGGCTGATTGTCTAAGGCCCCGGTGACATCATCGACAAACGAGTGTGCAACGACTGCATTCAAAAGCATCAGATCCAAGTTCCCGACTGTGAATGGTCTTTGGAGTTAGAAGCGCGTACGATTGCGATTGTGCGGATTCGCGGACGGCGGGCAGACTGGCTGGATGAAGGCTGGATGAAGATTGAGATAAAATGAAGCATTCGGGGAACCGGCTATATTCTTCAAGCGATTGACAACTATAATGAATAGAAGATGATTTGGCTGTTACGGTTGGTAGGGAATGATGCGATAAGTAAGACTTGCTACAAAGTCTGTGAACCTCCCGGGGATTTTGCAAGATTGGAGGTTCACAGATTTTTTTGTCTTTTGATATAATGAAATTACTTGATATTCATCGTGTTCACATACGG # Right flank : CAAAACTCAGAGAATCGTTAGGACTATCCCAACAACAGTTTAGTTGTATCCATATACGTGAAAGTGATGGGAATCACGCAACGATTACAATGGGCTAAAAAATAAAAAAGAAGGGAATAACCTCCCTTTATTTTGGCGGTTTAACTGCGTATAAGGTGTAGAACCAGCATACAGCCGCTGAGGGATCATAGAACTATATAATGGTAATTGTCGTCCGATAATTCAGATTGAATTAATGCTTTGGACAAATTTTCTCCATAGTAGTCAGTTGGTGGTTTATGCCCCATTGGACCAAACAAAGCGTTTCCAATGACCATGGTAAGTTGGGTTAATTCCCCAGGTTCCAGTTAAGGTAAACCAACCGATTGGGAAATTTCATAAAAGAGCTTTACCTTTGTGAAACCTTTTCAATTGGATGACGTCTAATGGATGACGAAAGGAGGGAACTTTCATTCCGTGGTTAACGGTGATAACCCGATGTTGATATCACCGGGAAGAAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGTTGTATCCATATTGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 3 96165-96986 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOCQ01000010.1 Lihuaxuella thermophila strain DSM 46701, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 96165 30 100.0 34 .............................. TCATAAGGATCAAAGTTTTCGTGAACCCATCTAC 96229 30 100.0 35 .............................. TTCAAGGCATCTTTCATAGCCTGACGAGCTTCGTC 96294 30 100.0 37 .............................. TGACGAACAAAATGTTCATGCTTTAAAACAATTCGGG 96361 30 100.0 36 .............................. GGGGGACTTTGACGAGGATGCTATCCTCTGAAATTC 96427 30 100.0 36 .............................. GCTGAAACAATAGCACGAAAAAAACTGAATGAAAAA 96493 30 100.0 34 .............................. AGTTCTGGTTCACGGCTGTAAGGTGGCGGACTTC 96557 30 100.0 36 .............................. TGGCATAACTTCGCCATAACTTCAAATGTAATTCCC 96623 30 100.0 39 .............................. TTGCAAAATAACCGCTATACCCTTCTAAAAAAACGACAC 96692 30 100.0 36 .............................. GACCGTTGGCAAAAAAGGCTGGATGAAGTCAAAAGA 96758 30 100.0 36 .............................. ATGGAAAAAGCTTATGAGGTAATGGATTGCCGTCAC 96824 30 100.0 38 .............................. AAGTGCATATTAGCATCTAAATTTTGTTTCAACTCATC 96892 30 100.0 35 .............................. TTCTCCATCCCACATATTGGCTTCCCAGCTCCCCA 96957 30 96.7 0 .........C.................... | ========== ====== ====== ====== ============================== ======================================= ================== 13 30 99.7 36 GTTTAGTTGTATCCATATTGGTATTGAAAC # Left flank : GAGTACCGTTGCGGCCAACTATTGGAGCCGTCATGTCCGATTCCTCTATGACGGTTCAACAGGAAGAAAAACGATCACCGCGATTGAAGATTTTGATCCACAGTTGCAGACCATTCATTTGTCGGACGTGAAGGGCTTGCTTGGCAACCCTGTAAGTGAAAAGGAACAAGAAGGTAACTACTATGTTACTTATACCGATAACGAAAATTATACGGTGATCTTCGTGTTTGAGAGTGCCTGGATTAATCCCGACCCAGCACTCAGTATGTATATTGTACAAAAGCCCACACCTAATCATCAGTGACTTTTCGCATAAAAACCGCCCCTTTGATTTTACTGGGGGGATTCCATTTTTTTCTTCGGTTTGTAGTGAAATGATTTAGTAAAACTCGCTGAAATGTCTGTGAACCTCCCGGGGATTTTGCAAGATCAGAGGTTCACAGACTTTTTTGGTTTTTGATATAATGAAATTGTTTGATATTTGTGGTGTTCACATACGG # Right flank : CACAAACAAAACAGGCAATCGAACGATTGATTGCCTGTTATCAGTTATATATTTAAATGTTGTCAGACGTGATTCGCACCGTCTCCCATTTTTATTTAAGTCTGACCCTTCGACTCGTTGAGAACTTTGTTTGGTAGACTTGGGTGACGGGCGTGTAAGGAAAGAAGTAGAAAACACAGCCAGGAAATACACGCGCAAACAAAAAAGGGCTCTCGACATGAAAGCGAAGCCCTTTTTTTAGTATTGAAAGAAAAATGTTTTAATCAATCTTCTGGGGGATCGTTTACAACGGACACTTGATTGGGCAATACTTGTGGCAGCATCGGACCGAACCCCTCTTTCCGGAATTTTTTTAAAACCTGCTGAAACTCATCCATATAATCATGGTAAGCTGGCAAGTCCTTCTTTTTACAAATATCAGTGATTTCTAACAAAATGTCAAGTACAAAAAGATCCAATGAATGTTTTTTAGCCAAATCCAAGGCTTCCTCAAAACACTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGTTGTATCCATATTGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 4 100051-100538 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOCQ01000010.1 Lihuaxuella thermophila strain DSM 46701, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================== ================== 100051 27 100.0 39 ........................... ATTTTATCCCGTAATTTACTAGCCACGTGAAACCACGTG 100117 27 100.0 40 ........................... TGAACATATTAGCCCATTTGTAGAAGCGATATAATTCGTG 100184 27 100.0 39 ........................... CATTTTATATGCAATTCTAATAAACAAAACGGCATGGTG 100250 27 100.0 40 ........................... TCTAGCAGGATCAAGACAATACGTCTTCATGGTTCTCGTT 100317 27 100.0 37 ........................... AGGGACTGATCCAACGAAATGTATCCACCTGGAGGTT 100381 27 100.0 40 ........................... CAAGGCAAGGGAGCGTTTAAAGAAGCGTGACCAATGGGTT 100448 27 96.3 37 ......A.................... TTTAATCTTCCTAACTTGTATTGATAAGCTTCCGGTT 100512 27 96.3 0 ..............A............ | ========== ====== ====== ====== =========================== ======================================== ================== 8 27 99.1 39 TAGTTGTATCCATATTGGTATTGAAAC # Left flank : AAACAGAATGAATCTTGAAAAAGAGTGGAGAGTGGCCAAGTTTAGATGAGCAGAGGGATGTCCCGTGTCAAACAGAAAAGAGCTGTTAATGAAATTGGCGGACAAGATCGAGCGCGAGTTAAGGCAGACCATCATGACCCATCCCCAACCCTGCCTTACCGAAAACTACGCATTTTGTGAGGTTTGCCTGAACTGGACTTGGAGAAAAGATGTCCGGCTGGTTGTCGAAGGCCCCGGTGACACCATCAGCAAACGAGTGTGCAAGGACTGTATTCAAAAGCATCAGATCCAAGTTCCCGACTGTGAAAGTTCTTTGGAGTTTGAAGCGCGTACGATTGCCATTGAGCGGATTCGCGGACGGCGGGCAGACTGGCTGGATGAGGATTGAGATAAAAAGTCTGTGAACCTCCCAGGGATTTTGCAAGATCGGAGGTTCACAGATTTTTTTGGTTTTTGGTATAATGAAATTGCTTGGTATTAGTGGTGTTCACATACGGGTG # Right flank : CATGAACATCTCACGCAGGGCCAAGTATGTAGAAGGTGTTATTAGTATTGAAAGATAGGTTTACAAGGCCGGTTGACGGAATTGAACGCTTTTCATAGCCCGCAAATCGATCGATCATGAACGTGAATGAATGACACAAAAAACCCAGGCAGGTGGCTTATTCCACCTGCTTGGGTTCGTTTAGGCATCGGCCAGTTCCGCCCACTGGTCGGTTTTCTCGGAGAGGGTTTGTTCCAGCTTTTCCAGCTCCTTTTGCAAGTCGGCGCTCTTCAGGGGGTCCGAGAAGATTTCGGGCTGGCACAATTCCTGCTGAATGCGGGCGATGTCTGCTTCCAGCTGTTCAATCTCCTGTTCCAGCCGTTCAATCTGTTGCTGCCGCTTCTTTTGGCGCCGCTGTTCCTCTTTTTCTTTTTGGCGACGGGCGGATTCGCTTATTGCATCCTCTTTGGGAGATGATTCGGCTTTCTGCAGCTTTTCCAGCGCTTTTTTTTCTAGATATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAGTTGTATCCATATTGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.37%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 148166-145485 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOCQ01000006.1 Lihuaxuella thermophila strain DSM 46701, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 148165 37 100.0 38 ..................................... TCATTAAGTTTAAATACAGTTCGTTTAGGAAGTCCGCC 148090 37 100.0 35 ..................................... TTTTTGCGTAGCGTCCAGCGTGAGAACCCACTTGC 148018 37 100.0 37 ..................................... TTGTCCGTGAGGCCATTGAGGGGTGATGACGATGGCC 147944 37 100.0 36 ..................................... GTGAAATATACGTCCATGAGATGGACACAGAAGACA 147871 37 100.0 38 ..................................... TGGTAGATGCAGCCGTAAACGCCGCAAAAAATGCGGTG 147796 37 100.0 37 ..................................... AATATACTAAAAGTAAATCAAGATCACGAACCGCGAA 147722 37 100.0 37 ..................................... GTACTGAGTCTCGAGTACCTTTTGCGGTACGCCGAGT 147648 37 100.0 34 ..................................... TGGTCCAGGCTAGCGACAGAGCTTTTACTTTCAT 147577 37 100.0 35 ..................................... CGTACTCGCGCTGATGATCAGTCGCCGCCTTCTCG 147505 37 100.0 35 ..................................... CCGTATCGACCGCTCCGAGGACGACATTCTCTATT 147433 37 100.0 35 ..................................... AGCTTGACGATTCTTCCCTCGTGAAAGCGGCAGGC 147361 37 100.0 35 ..................................... CTTCCAACGAGTTAGCTGCCTCGATTCGTATAGGA 147289 37 100.0 35 ..................................... TTTTCTTGCCGGTTTCCCACTCACCAACAGTTGAT 147217 37 100.0 36 ..................................... TTTTGAGGATACGCTAACAGAACGGCTAGAGCACGG 147144 37 100.0 35 ..................................... GACCACAAAGGGCAACGGTTTAGCCTATTCGGGAC 147072 37 100.0 36 ..................................... AGAAGAAGCGATAGAATCCGCTATGCAAGGCGCAAC 146999 37 100.0 36 ..................................... AATAACTTGCGGCGTTTCTTCTTCCTCTTCCGGTTC 146926 37 100.0 35 ..................................... TGTTCGTCTTCATCAGCTACCAAGTGCGCCGGGTC 146854 37 100.0 37 ..................................... CATATCAGTCACAGGCTCTGGTGACGGTTTCGCTACC 146780 37 100.0 38 ..................................... TTTCCTGCGGTTCTTTCATGCTATAAAGACTGGTTGAC 146705 37 100.0 36 ..................................... TACCGTTTTTACCCCACCGTTGCAACGCTTCTAAAC 146632 37 100.0 34 ..................................... ATTAACGATGAGCCGGATAAAACGTACTACGCAA 146561 37 100.0 38 ..................................... GTCAAAAACACGCGGTATTCGGGATATGGCCGCTTTTA 146486 37 100.0 39 ..................................... AGGTAATTCCGGGTTTAAAACGCCTACGGGTGTTTCGTC 146410 37 100.0 35 ..................................... TGCAGAATCAATTCCGGTTTAGCGATTGCCGGGAA 146338 37 100.0 37 ..................................... TGAATGACCGGAGGTAAGATACCTTTAATCCGCTCAA 146264 37 100.0 40 ..................................... CCGATTAAAATGATTGACCCACCGGAAGAACAAACAAAAC 146187 37 100.0 39 ..................................... TAAGTGAAACCTTCCTCAATGATATTTTCCGTCAATACG 146111 37 100.0 37 ..................................... TCCACCGTGGCATGATCACAATGTCAGATTCAAGTGG 146037 37 100.0 37 ..................................... CGGTTTCAATCCTTCAATCAATGACATGGGCAAAGGT 145963 37 100.0 40 ..................................... AAAAAGGTGATCATTGTTCCCGATAACGATGCAGCCGGAA 145886 37 100.0 38 ..................................... ATCTGATCCCGTGGACGGGTTCACATAGATGGTGATAT 145811 37 100.0 35 ..................................... ATCGAAGCAATGGGGAAAGCATTAAACTTGGCTTT 145739 37 100.0 35 ..................................... AACCTTTTGAAACTGTCTAAATTGGTTGTAATAGG 145667 37 100.0 38 ..................................... TTCTGCTATTACCCGGACGCACGCATAAACGGCACTGG 145592 37 100.0 35 ..................................... CACCGTATGCGCGGTCGGTTCAGCTCTCGCATGCA 145520 36 94.6 0 ........................-.........G.. | ========== ====== ====== ====== ===================================== ======================================== ================== 37 37 99.9 36 GTCTCAAACGAATGCACCTCATTAAGAGGATTGAAAC # Left flank : TTGTTCTCCAGTGCGGGCAAAGTGTTGGAGATGTGTGAAAATCTGGTTGTTTCCCCCGCGGAAATAGAGGATTTTGCCCGGAAAGTGAGGGTGGAGCACGCCTCTATTAGCACCAAACGGGTTGATTTCGGCAAATTTAAAGTGATTGGCTTTACCGGAACACTGACGATCAACCTCAAAGCGCTGCCTGCCCATGAACAGCACCTAGTATGGAAACTCTCTGTATACGGCTCCATGATGGGGTTTGGCTATAAAACCGCCTGGGGATTGGGGCAAACCAGACTGGAACCGTTTGCCCCAATTCTGGTTTCCGAACACCCATAGCTTCGGCTCAGACCCGGGGGGTGTTCGGAAACCGGGAAAATCCACTAAAGATAAGCGGTTTGACGATTTTGAGACGAACTGAAGGAGGGATTTTTAATGAAAAAACATGTGCTAAAATGGAGGTGTTCGGAAATGAATGTCGAAAGCCTTCCTTATCAAGGGATTTGACACCCGCC # Right flank : GAGTAAACCAAGCAGAACAAAATGCAAAACTTGAAGCCTCAAACGAATACTAAACTACAAAAAACTAACAGGACTTGAATAATGGAGTTTGTTTCGCTTGCGTATATGGATAATGATTTCCTCATTTTGGGTGGGGGTCATTAATTCACTAAAACTATAATTCAAAAACAATATTTACATAAAGGCTATTTCCTGGTATTATTTCGTCGAAGAATTAATATCTGTATATTGCTGCTATTGGGGCGATTAAAAATGTATAAGAATAAGTCGTTTATTTTTTTCTATGTTCTTTTACTGGTATTTGTTTTGGCTGGATGCTCTGAGCAATCATCAGAAGAAAAATCTCAAGAAAAAGACTTGCCCAAATTGATGTTTGAGGCACAAACCATCACTTTGGATGGAAAAAATTATACGCTTGATCCACGCTTGCAACTGAATGATAAAAACGGAATAGGACAAGCGGTCGGGCTGATCTACGACACAGCCGTGGTTCATGAGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAAACGAATGCACCTCATTAAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-4.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 2 161356-159032 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOCQ01000006.1 Lihuaxuella thermophila strain DSM 46701, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 161355 37 100.0 35 ..................................... TACTTTCACTTTTGAGATGGACGACAAAGCTGGCG 161283 37 100.0 34 ..................................... GCGATTGGAACTTGCGCGGATGTGGCAAGGCCAT 161212 37 100.0 36 ..................................... CCGCCCATCCCTTGGGAAGGAGTAGAGAATATGGCC 161139 37 100.0 35 ..................................... CAATTCTTTGGCGTATCTTACAAACCAGCAACAGC 161067 37 100.0 36 ..................................... CATCGGCGGGTATAAATATCGCCCAATGCTGCCGAA 160994 37 100.0 38 ..................................... TAACGAAATTTACCTTCAATAATCCGAGCAGTATAAGA 160919 37 100.0 36 ..................................... GAGGTTTCGATTGAACTGGAAGGAACCGGACCAGTC 160846 37 100.0 36 ..................................... AATCATCCTCCGTATTGTTTATCGTTCCCTCACTCT 160773 37 100.0 38 ..................................... TTACGACTCGCCCCGCCGTTTTTCATTTCGCGAGAGAT 160698 37 100.0 36 ..................................... AATATAGGCAATTGCGATTACTTCCACCGATCCGTC 160625 37 100.0 37 ..................................... CATCGTCGCAGTAAAGATCGGGTAAGTTTCCGCGGTT 160551 37 100.0 39 ..................................... CCCCTTTTTCTTTTCTAACCCTACCCTTACCCTTACAGA 160475 37 100.0 44 ..................................... ATAGAAAGAAGGGAAATTATGAGAAAGCAGAAAATCACCTTCAC 160394 37 100.0 36 ..................................... TATTAGCGTCTATGTGCAAATACGCGGGTTCCGAAC 160321 37 100.0 35 ..................................... TTTAATCCCGGATACTTTGCCGTCGGTCTATACTC 160249 37 100.0 36 ..................................... GAAGCACGTAGGATGCTAGATCCTAAATTCCAAAAA 160176 37 100.0 40 ..................................... TGCCGGTCTGGTTCGCAAGTCCAATGTCGCGTCCCATAGT 160099 37 100.0 35 ..................................... GAGACTGGTTTTTATTTTTCATCTTCATCAATCGC 160027 37 100.0 36 ..................................... AGACGACCGTATCCTTTTTGGTTCCGGTTTTCGAGA 159954 37 100.0 37 ..................................... CAGATATATTAACGAGATTAAATTAACGCAGGATCAC 159880 37 100.0 36 ..................................... CGGGAAACATGGGAGAACGTTGTCACCGTTTGGGCG 159807 37 100.0 37 ..................................... GTAGTAGTTTATCGGTTGGACCGGTTAACCAGATCGT 159733 37 100.0 37 ..................................... AGGTTAACGGCAACGAACGAAAGGGGAAATGGTAAGT 159659 37 100.0 39 ..................................... ATCCCCCATTGTTCAAAATAACTTGGCATCGTTAATACC 159583 37 100.0 38 ..................................... CTCGATGCGGTTCCTCTATCTCTGGACAGATCGACAGG 159508 37 100.0 36 ..................................... AGCTCTGCGATCCGAACGAGGTAGGGCTCCATCACG 159435 37 100.0 39 ..................................... TGCGCTTTCCATCTTCTCTTCCATCTGGTCAAGCCTGGC 159359 37 100.0 36 ..................................... GCCCATCGTTTTGAAAATCCGGATACCGGATCACCT 159286 37 100.0 36 ..................................... GTCTCGGAGATAGCCGAAGGGTGGCTTTTTGCCGGT 159213 37 100.0 35 ..................................... TATATTGTCGGAAGAGAATACCTTCCGGCTGGCAA 159141 37 100.0 36 ..................................... CGTTCGGAAACCAGACCTTTCAAGGTGGCCGATGTT 159068 37 89.2 0 .................................TTTT | ========== ====== ====== ====== ===================================== ============================================ ================== 32 37 99.7 37 GTCTCAAACGAATGCACCTCATTAAGAGGATTGAAAC # Left flank : CTTCCCCCACCGAGATCGGAAACGTAAACGCACTCTGGATTGACCACAAAACAGGCAACTATCTGGGTGCAGGCGATTCCTCACGGGAAAGCACCGCCATCGGGTTGAACAGGAGATAGGATAGAAAAAAGCCGGCAGCATGGAAATCAGGGCTGCCGGCTTTCTTTGTTGGGAGAAAAAGTAAAAGGGTGAATATAGATAGGATGACACACAGAAGCTTTTTTTTAATAATTTAAATTTGTACGTTTATTCCATTGCAATTCAGGTCAGGGTATAATCATTATGAGAGTGAAAGGACATCAGCACTTTTTCCGAACACCCATAGCTTCGGCTCAGACCCGGGGGGTGTTCGGAAACCGGAAAAGCCAGTAAAGATAAGCGGTTTGGCGATATTGAGACGAACTGAAGGAGGGATTTTTAATGAAAAAACATGTACTAAAATGGAGGTGTTCGGAAATGAATGTCGAAAGCCTTCTTTATCAAGGGATTTGACACCCGCC # Right flank : ACACATCCGCTCCAACTATCTGCCGGACCTTAGGAAAAATGTCAATCTATGCCCTTAATAAGATGACAATGGTGAACAGGGATTCTTGGAGATTTATGAAGGACAGGTGGTCTTAATAAACGAAAACATCCTAATAAAAAATTCTTTTCGAAAGGAACCACGCAATGAAAAAGCAAGCCCGTGTTGAACGATTGTTTGACATGATTGCCCGTTTGCTGGTTGATCCCGGCCCGCATTCGATCAAGGAAACGGCTCAACGTTACGGAGTGAGTGAGAGACAAATTCGAAAAGATATAGATGTTCTGATTAAGCTTTTAAATGAACCGAATCAAAAAGAGTACATCATAAAAAAACACGGTAAATATGAGGGCAACTTTTCGCGCAGTCTGGCAAGTCTCAACTCCGAAGTGAGACTTTATCTTTTTTTGGCATTAAAACAAGTGGAACCATTGCTTCAGAATGCAAGAGCATACGAGTCATTATTTAAGCATGCGTGTTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAAACGAATGCACCTCATTAAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-4.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 9168-9467 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOCQ01000018.1 Lihuaxuella thermophila strain DSM 46701, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 9168 31 100.0 36 ............................... ACACGATAGTTTTCTATCATAACGAAACTGGAGGAA 9235 31 100.0 36 ............................... CTCCAAGAAAACTCTGACCTTACTGTTACAGTCCTT 9302 31 100.0 36 ............................... ATTCGCAACCCAATCCAGTCGAAGAATCACCCGGTC 9369 31 90.3 38 ..........C.....AA............. AGCATAATCCGTTGTCACTCCCCTCCCGAGGAGTTTTC 9438 30 74.2 0 ....AG...CT..T..AA..-.......... | ========== ====== ====== ====== =============================== ====================================== ================== 5 31 92.9 37 GTTTGAGTTGAATCCATGGTGGAATTGAAAC # Left flank : TTCCACCAGGCGCCGAATGATTTCCGGGTAAATGGAATCCGCTTTAAAGGTGAGCATGCCTTTCACTTTCATGCAAGCCCGCAGGTTGTTCCTGCATTCAAAACGGGGCCGTGAAAAGACAAGCGGCTTATAAGACCTTCTTTGAAACGCAATGCCTTCATTATGCAACCAATCGGCCAACCCGGGATCTGCCTGTTTGATGCACCGCAAAAGATAACTGCTGATCAGGTAGTTCAGATCGTAGGGAAGAGAGATTTCTTCATTGATAAAAAAACGGGCTTCCATTCGCATAAAGGTTTTCCAGCTCTTTCTGTCTCATTTTCTTCTATGATACCATGAAGGGGAACAGACGGATTCGGCTTATGACTGAACCATGTAAAAATGGCTCCGGGTTGCCAAGTCTGTGAACCCCCCGGCTATTTTGCAGGATGGGAGGTTTACAGACTTTTTTGCTTTGGGATATAATGCTAATATCTGATAAAACTGAATTCCGCTTACGG # Right flank : CGTGAAGTTCACATCACAGAAGATAAAGTCTTGAAATTTAACCCCCCCCTATAACCAGCGGCTTCCGTTCTGCTTGCCGGAACGGCTGCATAAAATAAAGGCCGATTCTCCACCATTTGGAGAGTCGGCCTTTTTACCATTGCCATGATTATGGCGCTCTACCGCTTGTCCACTTTTTCAAACCGTCCGTAGCCAACGGCGGTCTTTGCTCCTGCACCGATCCACATCAACGCTTCTTGCAGCCAGTTTATAACGTTCTCTGCATCTTCGCGGTCTTGTGCGTTTTCCGGTCTGCGGGGAGCGATGGAAAAGATGAACTCCTGATTTTTTCCGACGACCAGAAAAGGAATCGGAACCGGTGCATACCAGTCCACAGGGGGCGTATTTCTGTTCCGGGGGTCCTTATAATATTCACTAAAATGCGGGGTCATGATATCGGGCTCCAGCTGTACCGGTCCGGCGGGAAGGGCATCGAAAAAGATCACGCTGCCCGCCTGGCT # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:0, 3:3, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGTTGAATCCATGGTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //