Array 1 78925-77215 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATUZ010000008.1 Escherichia coli strain SCPM-O-B-8800 8length=130481, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 78924 28 100.0 32 ............................ ATGCACTAACGTTGGTTCAAATCTAAGCCATC 78864 28 100.0 32 ............................ ATGCACCAATACCGGCATTTCTGCCCATACCA 78804 28 100.0 32 ............................ GCCGATATAATGCGTTTCTTCATTATTGATCT 78744 28 100.0 32 ............................ TCCATCAGGAGGCGGTTTGCGCGAAACAGCGT 78684 28 100.0 32 ............................ GCGCACGCACAGCCATCCGATTACCACCTGGT 78624 28 100.0 32 ............................ GTCACCCGCGACGATATTCCGTTTGCCATCTG 78564 28 100.0 32 ............................ GTTCCGGGAGGCTGCCGACACTGGCACCGCCG 78504 28 100.0 32 ............................ TTCGGGAAGCGTGGCGCTTTCTCATAGCTCAC 78444 28 100.0 32 ............................ ACCTGTAGAAATTCGAATTAGTGACACGACAA 78384 28 100.0 32 ............................ TGAATGGAGGAGCATCATAATGAGATTCCTGT 78324 28 100.0 32 ............................ CAGTCGAACGCCAGCCAGAACGCCTGCTCCTC 78264 28 100.0 32 ............................ GCGATGAATGCGGGGTTTAAGCGGTTGAAAGA 78204 28 100.0 32 ............................ AATAATCTTGCAGAACGCCGTGTTACTGATGG 78144 28 100.0 32 ............................ CATTCCGGACTGGCATCAATAGCAACCGGAAT 78084 28 100.0 32 ............................ GGAACCGTGGCGGCTCGGTGGTTCTAGAGATC 78024 28 100.0 33 ............................ GGTACCTTGCAGGCTCAAAAATTGCTTGATTTT 77963 28 100.0 32 ............................ TCTTGCGTCCCCTGAAATACATCAGGGGATTT 77903 28 100.0 32 ............................ TTTTGGGGATACCTGTGTAAACCTTGAATTCT 77843 28 100.0 32 ............................ TTGTTGCGTGTTGTCGCATCCAGGATGCGACA 77783 28 100.0 32 ............................ TGTCAGGGCAGGCCCCGACACCCAGAACGTGC 77723 28 100.0 32 ............................ TTCAGCAGCTCTCGAACACGTTCCCAACCTTT 77663 28 100.0 32 ............................ ATGCGGTTGGTAGGTGGTCGTAGACCGTCAGT 77603 28 100.0 32 ............................ GTTCCGTATACCAGTGATATGCAGAAGGAACA 77543 28 100.0 33 ............................ AGGAGCATTGGCGGAGGGAACGCGAGCGCGGGT 77482 28 100.0 32 ............................ GAATCTCGGCGCGACGGCACCCGCCACCGGGG 77422 28 100.0 32 ............................ AGTTCGCGGCAGACATACACGCCGGGAGTTTT 77362 28 100.0 32 ............................ CAGCGGGGTGATTGAATATTTTGGCATCAGAC 77302 28 100.0 32 ............................ TTTCTGCTGTTATCGCCGGGTTGCACGAGTGC 77242 27 92.9 0 .......................C-... | T [77223] ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATATAGATTGATTCGTTTGGTTACGCAATGAACACACTGTTGGTGGGACGGAGATTATGACTGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAATCGTCCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTGTTTACTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 89204-87984 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATUZ010000008.1 Escherichia coli strain SCPM-O-B-8800 8length=130481, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 89203 28 100.0 32 ............................ ACCTGCAAGACGGTTTTTGTTTTTCACAAAAT 89143 28 100.0 32 ............................ GAGAACAGGCGGACACTTGTCACCCCGAATAA 89083 28 100.0 32 ............................ CCGGATGCCCACACCCCACGCAAAACTAACTT 89023 28 100.0 32 ............................ GATCTCAGTGCGGGACTCTGCTTTCATCTCTC 88963 28 100.0 32 ............................ GCCTCAAAATCCCTTGCGTGTTTTTGCTCCCC 88903 28 100.0 32 ............................ ATAAAGATAATAACACAATCGTGTCTGGATTT 88843 28 100.0 32 ............................ AGGAACCGCGTCAGCCCCCTGCAAAGCTCATT 88783 28 100.0 33 ............................ TGGCGCGCCTGGAGGACATCCCGGAAGACCAGC 88722 28 100.0 32 ............................ GGTAACGGGTCAGGCCGACCGTGGAATACCGC 88662 28 100.0 32 ............................ GCCTGCAACCACTGATTGAGAGCTTCACACAT 88602 28 100.0 32 ............................ ATAAAGCGATCGACGCGGTTCCAGCCATAGAA 88542 28 100.0 33 ............................ TGATGCATCACAAACGGGAAGGGTAACGGGCGA 88481 28 100.0 32 ............................ AGACATCTGCTCAATAGAACGGGTGATCTCAA 88421 28 100.0 32 ............................ AGATCCAGTTCATCATCCAGCGCAGACTCTTG 88361 28 100.0 32 ............................ CGTCACCCGCGCAGCAGTCACACGGGCGCACG 88301 28 100.0 32 ............................ ACCGCCGGGGCGGTTTCCCCGATGAAAAGGAA 88241 28 100.0 32 ............................ GTGGCGCTAGCAATGAGATTTGCGGAAAAAAG 88181 28 100.0 32 ............................ GTGCTGCCCGCCAGCGTGGCGTAATTGTCACA 88121 28 100.0 32 ............................ AAAAAGTTGCGCCGCGTGACCGGCACTATAGA 88061 28 100.0 20 ............................ CTGAACGTTGAAGAGTGCGA Deletion [88014] 88013 28 78.6 0 CC..................T...C.CT | C,A [87987,87990] ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATCGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //